Wall clock time and date at job start Mon Mar 30 2020 03:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47334 * 2 1 4 4 C 1.50699 * 109.46948 * 120.00086 * 2 1 3 5 5 H 1.08005 * 120.00110 * 120.00294 * 4 2 1 6 6 C 1.37874 * 119.99947 * 300.00010 * 4 2 1 7 7 N 1.31513 * 120.00080 * 180.02562 * 6 4 2 8 8 Si 1.86803 * 120.00154 * 0.02562 * 6 4 2 9 9 H 1.48494 * 109.46905 * 89.99726 * 8 6 4 10 10 H 1.48500 * 109.47195 * 210.00113 * 8 6 4 11 11 H 1.48501 * 109.46789 * 329.99861 * 8 6 4 12 12 N 1.46901 * 109.47202 * 239.99954 * 2 1 3 13 13 C 1.46900 * 110.99944 * 85.00205 * 12 2 1 14 14 H 1.09004 * 110.27645 * 34.30002 * 13 12 2 15 15 C 1.54596 * 110.31075 * 272.20916 * 13 12 2 16 16 C 1.55098 * 102.84965 * 219.18609 * 15 13 12 17 17 N 1.48542 * 103.28161 * 37.30147 * 16 15 13 18 18 C 1.46903 * 110.99646 * 200.33356 * 17 16 15 19 19 C 1.52999 * 109.46491 * 172.62227 * 18 17 16 20 20 C 1.52993 * 109.47188 * 292.61998 * 18 17 16 21 21 C 1.52993 * 109.47290 * 52.62177 * 18 17 16 22 22 C 1.47896 * 105.82187 * 320.84669 * 17 16 15 23 23 H 1.09007 * 109.47102 * 60.00478 * 1 2 3 24 24 H 1.08993 * 109.47385 * 300.00297 * 1 2 3 25 25 H 1.09002 * 109.46928 * 179.97438 * 1 2 3 26 26 H 0.97000 * 120.00607 * 180.02562 * 7 6 4 27 27 H 1.00902 * 111.00079 * 208.94902 * 12 2 1 28 28 H 1.09004 * 110.72339 * 337.48570 * 15 13 12 29 29 H 1.09002 * 110.72686 * 100.76185 * 15 13 12 30 30 H 1.08998 * 110.59509 * 278.87600 * 16 15 13 31 31 H 1.08996 * 110.83051 * 155.84543 * 16 15 13 32 32 H 1.08994 * 109.47628 * 60.00016 * 19 18 17 33 33 H 1.09002 * 109.46779 * 180.02562 * 19 18 17 34 34 H 1.08996 * 109.47411 * 299.99535 * 19 18 17 35 35 H 1.08997 * 109.47498 * 60.00292 * 20 18 17 36 36 H 1.08997 * 109.47379 * 180.02562 * 20 18 17 37 37 H 1.09007 * 109.47318 * 299.99876 * 20 18 17 38 38 H 1.09002 * 109.47254 * 52.82358 * 21 18 17 39 39 H 1.09000 * 109.47315 * 172.82615 * 21 18 17 40 40 H 1.09000 * 109.47116 * 292.82746 * 21 18 17 41 41 H 1.08994 * 109.91889 * 265.98048 * 22 17 16 42 42 H 1.09001 * 109.91931 * 144.67853 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4827 7 7 2.1379 -0.8591 3.5565 8 14 0.6246 1.2790 2.6541 9 1 -0.8029 0.8725 2.6997 10 1 0.9757 1.9951 3.9068 11 1 0.8470 2.1764 1.4920 12 7 2.0197 -0.6925 -1.1994 13 6 2.0825 0.2226 -2.3469 14 1 2.3521 1.2255 -2.0158 15 6 0.7257 0.2486 -3.0874 16 6 1.1478 0.3064 -4.5788 17 7 2.3487 -0.5665 -4.6276 18 6 3.1657 -0.2719 -5.8124 19 6 4.4782 -1.0544 -5.7341 20 6 2.4021 -0.6816 -7.0732 21 6 3.4679 1.2270 -5.8637 22 6 3.0995 -0.2893 -3.3838 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.9033 -0.5279 4.4375 27 1 2.9174 -1.1204 -1.0287 28 1 0.1570 -0.6585 -2.8827 29 1 0.1530 1.1343 -2.8124 30 1 1.4019 1.3266 -4.8661 31 1 0.3596 -0.0876 -5.2202 32 1 4.2629 -2.1222 -5.6975 33 1 5.0846 -0.8355 -6.6130 34 1 5.0223 -0.7624 -4.8359 35 1 1.4671 -0.1242 -7.1290 36 1 3.0084 -0.4635 -7.9523 37 1 2.1868 -1.7496 -7.0367 38 1 3.8972 1.5439 -4.9132 39 1 4.1766 1.4276 -6.6673 40 1 2.5452 1.7776 -6.0472 41 1 3.8565 0.4727 -3.5690 42 1 3.5698 -1.2037 -3.0224 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693908983.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:36 Heat of formation + Delta-G solvation = 11.967981 kcal Electronic energy + Delta-G solvation = -18363.811549 eV Core-core repulsion = 15764.942356 eV Total energy + Delta-G solvation = -2598.869193 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.81393 -36.54320 -34.12100 -32.03140 -29.84868 -29.14548 -27.53315 -27.48294 -26.02199 -24.86724 -21.97808 -20.29740 -19.72154 -18.70571 -16.78846 -16.28051 -15.40458 -15.07859 -14.34263 -14.23114 -14.05719 -13.80448 -13.38963 -12.98000 -12.73342 -12.29143 -12.09190 -12.08680 -11.98717 -11.72751 -11.61883 -11.25908 -11.12811 -11.05621 -10.86453 -10.79089 -10.62048 -10.34476 -10.28516 -10.03274 -9.42854 -8.97342 -8.59751 -8.20626 -7.47860 -6.08881 -4.08408 3.27567 3.36384 3.39011 4.01202 4.39294 4.67552 4.79635 4.93380 4.96915 5.08800 5.16976 5.25498 5.40088 5.45059 5.52924 5.55182 5.68637 5.69685 5.75358 5.78357 5.85167 5.95333 6.02652 6.05840 6.15910 6.20160 6.29375 6.30637 6.44471 6.57273 6.64497 6.77765 6.85643 7.08152 7.23938 7.42414 7.61010 7.99519 8.37701 8.64365 8.96265 9.53716 11.04192 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.045413 B = 0.005391 C = 0.005140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.422021 B = 5192.364605 C = 5446.199744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.182 3.818 3 H -0.001 1.001 4 C -0.519 4.519 5 H 0.078 0.922 6 C 0.071 3.929 7 N -0.899 5.899 8 Si 0.892 3.108 9 H -0.278 1.278 10 H -0.298 1.298 11 H -0.270 1.270 12 N -0.666 5.666 13 C 0.076 3.924 14 H 0.039 0.961 15 C -0.111 4.111 16 C 0.029 3.971 17 N -0.498 5.498 18 C 0.090 3.910 19 C -0.140 4.140 20 C -0.134 4.134 21 C -0.184 4.184 22 C 0.035 3.965 23 H 0.029 0.971 24 H 0.034 0.966 25 H 0.057 0.943 26 H 0.264 0.736 27 H 0.340 0.660 28 H 0.087 0.913 29 H 0.061 0.939 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.045 0.955 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.082 3.913 -19.308 19.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.073 3.927 3 H 0.016 0.984 4 C -0.557 4.557 5 H 0.096 0.904 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.722 3.278 9 H -0.205 1.205 10 H -0.226 1.226 11 H -0.195 1.195 12 N -0.298 5.298 13 C -0.035 4.035 14 H 0.057 0.943 15 C -0.150 4.150 16 C -0.099 4.099 17 N -0.222 5.222 18 C 0.000 4.000 19 C -0.198 4.198 20 C -0.191 4.191 21 C -0.242 4.242 22 C -0.093 4.093 23 H 0.048 0.952 24 H 0.052 0.948 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.159 0.841 28 H 0.105 0.895 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.063 0.937 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.344 3.096 -19.311 19.560 hybrid contribution 0.390 2.263 0.575 2.367 sum 0.735 5.359 -18.735 19.500 Atomic orbital electron populations 1.22128 0.98735 1.01004 0.97750 1.19581 0.91862 0.92693 0.88546 0.98398 1.21127 1.32226 1.13719 0.88651 0.90361 1.24928 0.95693 0.96696 0.95768 1.69892 1.45617 1.40304 0.97912 0.86794 0.80753 0.83587 0.76632 1.20497 1.22614 1.19509 1.60628 1.32812 1.31765 1.04601 1.22392 0.94319 0.94688 0.92113 0.94304 1.22663 0.97433 1.02467 0.92396 1.23372 0.93338 0.95284 0.97925 1.64995 1.05777 1.50684 1.00765 1.21209 0.93780 0.93156 0.91831 1.21888 0.95463 1.00877 1.01547 1.21789 0.99647 1.02182 0.95517 1.22533 1.01835 0.97618 1.02245 1.23112 0.95806 1.00320 0.90054 0.95192 0.94776 0.92406 0.92613 0.84074 0.89485 0.92019 0.93623 0.90546 0.91705 0.92574 0.92478 0.92802 0.92659 0.91809 0.92183 0.92283 0.92163 0.93708 0.89794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.69 37.16 0.32 -2.81 16 2 C 0.18 4.35 2.19 -68.87 -0.15 4.20 16 3 H 0.00 -0.04 6.51 -51.93 -0.34 -0.37 16 4 C -0.52 -14.60 9.17 -34.44 -0.32 -14.92 16 5 H 0.08 2.37 7.86 -52.48 -0.41 1.96 16 6 C 0.07 2.06 5.45 -17.82 -0.10 1.97 16 7 N -0.90 -27.57 13.96 55.43 0.77 -26.80 16 8 Si 0.89 22.30 24.37 -169.99 -4.14 18.15 16 9 H -0.28 -6.80 6.87 56.52 0.39 -6.41 16 10 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 11 H -0.27 -6.52 6.53 56.52 0.37 -6.15 16 12 N -0.67 -13.66 6.12 -99.53 -0.61 -14.27 16 13 C 0.08 1.30 3.31 -66.35 -0.22 1.08 16 14 H 0.04 0.70 7.46 -51.93 -0.39 0.31 16 15 C -0.11 -1.71 5.16 -24.78 -0.13 -1.84 16 16 C 0.03 0.37 5.49 -1.81 -0.01 0.36 16 17 N -0.50 -6.65 5.09 -214.75 -1.09 -7.74 16 18 C 0.09 0.99 0.69 -131.61 -0.09 0.90 16 19 C -0.14 -1.45 8.27 37.16 0.31 -1.14 16 20 C -0.13 -1.29 8.48 37.15 0.32 -0.98 16 21 C -0.18 -1.88 7.59 37.15 0.28 -1.59 16 22 C 0.04 0.51 4.80 -2.75 -0.01 0.50 16 23 H 0.03 0.59 6.03 -51.93 -0.31 0.27 16 24 H 0.03 0.80 3.27 -51.93 -0.17 0.63 16 25 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 26 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 27 H 0.34 6.98 7.54 -39.29 -0.30 6.69 16 28 H 0.09 1.48 8.06 -51.93 -0.42 1.06 16 29 H 0.06 0.92 7.53 -51.93 -0.39 0.53 16 30 H 0.05 0.55 5.54 -51.93 -0.29 0.26 16 31 H 0.08 0.92 7.71 -51.93 -0.40 0.52 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.62 6.77 -51.93 -0.35 0.27 16 35 H 0.05 0.51 7.15 -51.93 -0.37 0.14 16 36 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.67 6.05 -51.93 -0.31 0.35 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.61 6.37 -51.93 -0.33 0.27 16 41 H 0.04 0.61 5.29 -51.93 -0.27 0.34 16 42 H 0.08 1.28 7.49 -51.93 -0.39 0.89 16 LS Contribution 303.13 15.07 4.57 4.57 Total: -1.00 -29.51 303.13 -7.46 -36.97 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -7.16 Total: 3.39 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: 0.20 Total: -14.28 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: -0.93 Total: -48.80 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.14 Total: 18.15 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.51 -7.46 -36.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693908983.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.938 kcal (2) G-P(sol) polarization free energy of solvation -29.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds