Wall clock time and date at job start Mon Mar 30 2020 03:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47163 * 2 1 4 4 C 1.50700 * 109.46627 * 119.99414 * 2 1 3 5 5 H 1.08002 * 119.99295 * 120.00408 * 4 2 1 6 6 C 1.37870 * 120.00304 * 300.27855 * 4 2 1 7 7 N 1.31520 * 119.99950 * 179.72828 * 6 4 2 8 8 Si 1.86799 * 120.00148 * 359.72212 * 6 4 2 9 9 H 1.48509 * 109.46684 * 90.00303 * 8 6 4 10 10 H 1.48497 * 109.47233 * 210.00012 * 8 6 4 11 11 H 1.48494 * 109.47078 * 330.00409 * 8 6 4 12 12 N 1.46896 * 109.47506 * 239.99580 * 2 1 3 13 13 C 1.46841 * 110.99866 * 301.20342 * 12 2 1 14 14 C 1.53050 * 109.52093 * 185.83792 * 13 12 2 15 15 C 1.53117 * 109.27446 * 300.81812 * 14 13 12 16 16 C 1.53125 * 109.16029 * 57.65661 * 15 14 13 17 17 C 1.46850 * 110.99634 * 65.41005 * 12 2 1 18 18 H 1.08996 * 109.46317 * 294.17513 * 17 12 2 19 19 C 1.53007 * 109.46349 * 54.14748 * 17 12 2 20 20 C 1.52997 * 109.47037 * 182.96527 * 19 17 12 21 21 C 1.52999 * 109.46840 * 174.79998 * 20 19 17 22 22 N 1.46904 * 109.47054 * 180.02562 * 21 20 19 23 23 H 1.09001 * 109.47593 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47836 * 300.00537 * 1 2 3 25 25 H 1.09008 * 109.46878 * 60.00306 * 1 2 3 26 26 H 0.96998 * 119.99765 * 180.02562 * 7 6 4 27 27 H 1.09000 * 109.46605 * 305.84921 * 13 12 2 28 28 H 1.09001 * 109.46598 * 65.82488 * 13 12 2 29 29 H 1.08997 * 109.50124 * 180.87567 * 14 13 12 30 30 H 1.09003 * 109.53159 * 60.78142 * 14 13 12 31 31 H 1.08999 * 109.52664 * 297.74844 * 15 14 13 32 32 H 1.09009 * 109.57010 * 177.58658 * 15 14 13 33 33 H 1.09002 * 109.49980 * 182.39838 * 16 15 14 34 34 H 1.08999 * 109.53162 * 62.30682 * 16 15 14 35 35 H 1.09003 * 109.46615 * 302.96802 * 19 17 12 36 36 H 1.09000 * 109.47296 * 62.96735 * 19 17 12 37 37 H 1.08992 * 109.47485 * 294.80728 * 20 19 17 38 38 H 1.09007 * 109.46928 * 54.80931 * 20 19 17 39 39 H 1.08997 * 109.47930 * 300.00235 * 21 20 19 40 40 H 1.09002 * 109.47049 * 60.00743 * 21 20 19 41 41 H 1.00897 * 111.00290 * 180.02562 * 22 21 20 42 42 H 1.00901 * 110.99653 * 303.95460 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6531 -1.5884 1.1315 6 6 1.6943 -0.2425 2.4827 7 7 2.1283 -0.8656 3.5566 8 14 0.6204 1.2763 2.6540 9 1 -0.8077 0.8708 2.6927 10 1 0.9670 1.9884 3.9102 11 1 0.8482 2.1767 1.4955 12 7 2.0197 -0.6925 -1.1993 13 6 1.5255 -2.0745 -1.2476 14 6 2.1696 -2.8070 -2.4271 15 6 1.8228 -2.0754 -3.7267 16 6 2.3052 -0.6253 -3.6312 17 6 1.6573 0.0439 -2.4170 18 1 0.5737 0.0395 -2.5351 19 6 2.1521 1.4875 -2.3061 20 6 1.7105 2.2743 -3.5417 21 6 2.0918 3.7462 -3.3721 22 7 1.6673 4.5019 -4.5582 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3635 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8903 -0.5367 4.4375 27 1 1.7824 -2.5847 -0.3193 28 1 0.4426 -2.0689 -1.3713 29 1 1.7908 -3.8280 -2.4719 30 1 3.2517 -2.8256 -2.2975 31 1 0.7433 -2.0910 -3.8766 32 1 2.3143 -2.5683 -4.5655 33 1 2.0234 -0.0877 -4.5366 34 1 3.3895 -0.6085 -3.5207 35 1 1.7312 1.9481 -1.4124 36 1 3.2401 1.4946 -2.2406 37 1 2.2044 1.8704 -4.4254 38 1 0.6300 2.1901 -3.6590 39 1 1.5978 4.1502 -2.4885 40 1 3.1722 3.8305 -3.2548 41 1 1.9084 5.4777 -4.4707 42 1 2.0610 4.1064 -5.3989 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693954878.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:15 Heat of formation + Delta-G solvation = -9.254467 kcal Electronic energy + Delta-G solvation = -18620.753247 eV Core-core repulsion = 16020.963779 eV Total energy + Delta-G solvation = -2599.789467 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.15392 -35.87489 -34.43417 -32.73422 -31.88613 -29.05037 -28.89224 -25.30943 -24.80542 -23.58773 -21.83136 -20.56108 -20.09525 -18.52914 -16.55861 -16.01265 -15.46554 -15.11667 -14.75930 -14.48876 -13.84488 -13.70077 -13.63576 -13.03926 -12.87159 -12.49865 -12.30013 -12.07498 -11.66117 -11.52729 -11.30998 -11.13943 -11.03736 -10.65589 -10.55448 -10.38070 -10.32187 -10.03684 -9.85791 -9.53215 -9.29822 -8.89958 -8.81039 -8.54234 -7.23061 -6.04196 -4.01367 3.27150 3.37104 3.39515 4.40493 4.41522 4.78167 5.03713 5.10976 5.25380 5.28120 5.31575 5.38240 5.57995 5.59949 5.78333 5.85967 5.92526 5.97253 6.09155 6.14377 6.16164 6.23222 6.27330 6.31799 6.36404 6.43103 6.48166 6.57569 6.62432 6.69933 6.75473 6.88374 6.97954 7.00998 7.28139 7.29948 7.69777 8.04193 8.19900 8.71563 9.03583 9.58638 11.08950 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017602 B = 0.009123 C = 0.006446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.330463 B = 3068.579552 C = 4342.882481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.178 3.822 3 H 0.046 0.954 4 C -0.500 4.500 5 H 0.082 0.918 6 C 0.069 3.931 7 N -0.901 5.901 8 Si 0.885 3.115 9 H -0.282 1.282 10 H -0.298 1.298 11 H -0.268 1.268 12 N -0.515 5.515 13 C 0.061 3.939 14 C -0.118 4.118 15 C -0.119 4.119 16 C -0.109 4.109 17 C 0.084 3.916 18 H 0.032 0.968 19 C -0.116 4.116 20 C -0.115 4.115 21 C 0.059 3.941 22 N -0.854 5.854 23 H 0.053 0.947 24 H 0.043 0.957 25 H 0.029 0.971 26 H 0.263 0.737 27 H 0.089 0.911 28 H 0.022 0.978 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.027 0.973 41 H 0.338 0.662 42 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.677 4.280 -15.223 15.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.070 3.930 3 H 0.063 0.937 4 C -0.538 4.538 5 H 0.100 0.900 6 C -0.132 4.132 7 N -0.540 5.540 8 Si 0.716 3.284 9 H -0.209 1.209 10 H -0.225 1.225 11 H -0.194 1.194 12 N -0.239 5.239 13 C -0.067 4.067 14 C -0.156 4.156 15 C -0.156 4.156 16 C -0.147 4.147 17 C -0.025 4.025 18 H 0.050 0.950 19 C -0.154 4.154 20 C -0.153 4.153 21 C -0.072 4.072 22 N -0.382 5.382 23 H 0.072 0.928 24 H 0.061 0.939 25 H 0.048 0.952 26 H 0.073 0.927 27 H 0.107 0.893 28 H 0.040 0.960 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.045 0.955 41 H 0.150 0.850 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.891 4.032 -14.778 15.344 hybrid contribution -0.601 1.051 0.151 1.220 sum -1.492 5.083 -14.628 15.557 Atomic orbital electron populations 1.22818 1.02008 1.00880 0.98804 1.19832 0.88485 0.95744 0.88938 0.93653 1.20978 1.31224 1.13726 0.87889 0.90039 1.24914 0.95915 0.96546 0.95873 1.69884 1.45933 1.40333 0.97831 0.86902 0.80576 0.84049 0.76828 1.20889 1.22532 1.19368 1.62069 1.59390 1.01360 1.01093 1.21994 0.95766 0.90175 0.98722 1.21633 1.01565 0.97815 0.94553 1.21566 1.00247 0.96155 0.97664 1.21645 1.01045 0.95150 0.96876 1.21534 0.96637 0.92915 0.91401 0.95012 1.21685 1.01735 0.94523 0.97490 1.21595 1.01717 0.93450 0.98536 1.21851 0.97513 0.94516 0.93304 1.58753 1.67972 1.06544 1.04976 0.92754 0.93887 0.95227 0.92722 0.89275 0.96021 0.92576 0.91491 0.92882 0.92757 0.92455 0.91498 0.91136 0.91334 0.92221 0.91621 0.91055 0.95495 0.84996 0.85064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.13 7.98 37.16 0.30 -3.83 16 2 C 0.18 4.16 1.56 -68.87 -0.11 4.05 16 3 H 0.05 1.10 4.90 -51.93 -0.25 0.85 16 4 C -0.50 -13.87 8.44 -34.44 -0.29 -14.16 16 5 H 0.08 2.47 7.04 -52.49 -0.37 2.10 16 6 C 0.07 1.97 5.45 -17.82 -0.10 1.88 16 7 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 8 Si 0.89 22.07 24.37 -169.99 -4.14 17.93 16 9 H -0.28 -6.91 6.86 56.52 0.39 -6.53 16 10 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 11 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 12 N -0.52 -10.52 4.47 -220.14 -0.98 -11.51 16 13 C 0.06 1.18 4.65 -3.83 -0.02 1.17 16 14 C -0.12 -1.84 6.09 -26.64 -0.16 -2.01 16 15 C -0.12 -1.64 6.00 -26.61 -0.16 -1.80 16 16 C -0.11 -1.57 5.06 -26.65 -0.13 -1.70 16 17 C 0.08 1.42 1.51 -67.72 -0.10 1.32 16 18 H 0.03 0.57 6.74 -51.93 -0.35 0.22 16 19 C -0.12 -1.84 4.40 -26.73 -0.12 -1.96 16 20 C -0.11 -1.48 5.05 -26.73 -0.13 -1.61 16 21 C 0.06 0.70 6.79 -3.82 -0.03 0.67 16 22 N -0.85 -8.76 9.62 -10.37 -0.10 -8.86 16 23 H 0.05 1.19 6.51 -51.93 -0.34 0.85 16 24 H 0.04 1.00 3.25 -51.93 -0.17 0.83 16 25 H 0.03 0.58 6.66 -51.92 -0.35 0.23 16 26 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 27 H 0.09 1.95 6.37 -51.93 -0.33 1.62 16 28 H 0.02 0.42 6.61 -51.93 -0.34 0.07 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 33 H 0.06 0.72 6.67 -51.93 -0.35 0.37 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.07 1.26 6.03 -51.93 -0.31 0.95 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 0.70 6.79 -51.93 -0.35 0.35 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.34 2.87 9.08 -39.29 -0.36 2.51 16 42 H 0.34 2.96 8.99 -39.29 -0.35 2.60 16 LS Contribution 303.14 15.07 4.57 4.57 Total: -1.00 -29.58 303.14 -8.15 -37.72 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -7.21 Total: 4.84 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: -1.05 Total: -17.98 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: -0.31 Total: -47.08 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.14 Total: 17.93 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.58 -8.15 -37.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693954878.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.469 kcal (2) G-P(sol) polarization free energy of solvation -29.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds