Wall clock time and date at job start Mon Mar 30 2020 03:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47163 * 2 1 4 4 C 1.50700 * 109.46627 * 119.99414 * 2 1 3 5 5 H 1.08002 * 119.99295 * 120.00408 * 4 2 1 6 6 C 1.37870 * 120.00304 * 300.27855 * 4 2 1 7 7 N 1.31520 * 119.99950 * 179.72828 * 6 4 2 8 8 Si 1.86799 * 120.00148 * 359.72212 * 6 4 2 9 9 H 1.48509 * 109.46684 * 90.00303 * 8 6 4 10 10 H 1.48497 * 109.47233 * 210.00012 * 8 6 4 11 11 H 1.48494 * 109.47078 * 330.00409 * 8 6 4 12 12 N 1.46896 * 109.47506 * 239.99580 * 2 1 3 13 13 C 1.46841 * 110.99866 * 301.20342 * 12 2 1 14 14 C 1.53050 * 109.52093 * 185.83792 * 13 12 2 15 15 C 1.53117 * 109.27446 * 300.81812 * 14 13 12 16 16 C 1.53125 * 109.16029 * 57.65661 * 15 14 13 17 17 C 1.46850 * 110.99634 * 65.41005 * 12 2 1 18 18 H 1.08996 * 109.46317 * 294.17513 * 17 12 2 19 19 C 1.53007 * 109.46349 * 54.14748 * 17 12 2 20 20 C 1.52997 * 109.47037 * 182.96527 * 19 17 12 21 21 C 1.52999 * 109.46840 * 174.79998 * 20 19 17 22 22 N 1.46904 * 109.47054 * 180.02562 * 21 20 19 23 23 H 1.09001 * 109.47593 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47836 * 300.00537 * 1 2 3 25 25 H 1.09008 * 109.46878 * 60.00306 * 1 2 3 26 26 H 0.96998 * 119.99765 * 180.02562 * 7 6 4 27 27 H 1.09000 * 109.46605 * 305.84921 * 13 12 2 28 28 H 1.09001 * 109.46598 * 65.82488 * 13 12 2 29 29 H 1.08997 * 109.50124 * 180.87567 * 14 13 12 30 30 H 1.09003 * 109.53159 * 60.78142 * 14 13 12 31 31 H 1.08999 * 109.52664 * 297.74844 * 15 14 13 32 32 H 1.09009 * 109.57010 * 177.58658 * 15 14 13 33 33 H 1.09002 * 109.49980 * 182.39838 * 16 15 14 34 34 H 1.08999 * 109.53162 * 62.30682 * 16 15 14 35 35 H 1.09003 * 109.46615 * 302.96802 * 19 17 12 36 36 H 1.09000 * 109.47296 * 62.96735 * 19 17 12 37 37 H 1.08992 * 109.47485 * 294.80728 * 20 19 17 38 38 H 1.09007 * 109.46928 * 54.80931 * 20 19 17 39 39 H 1.08997 * 109.47930 * 300.00235 * 21 20 19 40 40 H 1.09002 * 109.47049 * 60.00743 * 21 20 19 41 41 H 1.00897 * 111.00290 * 180.02562 * 22 21 20 42 42 H 1.00901 * 110.99653 * 303.95460 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6531 -1.5884 1.1315 6 6 1.6943 -0.2425 2.4827 7 7 2.1283 -0.8656 3.5566 8 14 0.6204 1.2763 2.6540 9 1 -0.8077 0.8708 2.6927 10 1 0.9670 1.9884 3.9102 11 1 0.8482 2.1767 1.4955 12 7 2.0197 -0.6925 -1.1993 13 6 1.5255 -2.0745 -1.2476 14 6 2.1696 -2.8070 -2.4271 15 6 1.8228 -2.0754 -3.7267 16 6 2.3052 -0.6253 -3.6312 17 6 1.6573 0.0439 -2.4170 18 1 0.5737 0.0395 -2.5351 19 6 2.1521 1.4875 -2.3061 20 6 1.7105 2.2743 -3.5417 21 6 2.0918 3.7462 -3.3721 22 7 1.6673 4.5019 -4.5582 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3635 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8903 -0.5367 4.4375 27 1 1.7824 -2.5847 -0.3193 28 1 0.4426 -2.0689 -1.3713 29 1 1.7908 -3.8280 -2.4719 30 1 3.2517 -2.8256 -2.2975 31 1 0.7433 -2.0910 -3.8766 32 1 2.3143 -2.5683 -4.5655 33 1 2.0234 -0.0877 -4.5366 34 1 3.3895 -0.6085 -3.5207 35 1 1.7312 1.9481 -1.4124 36 1 3.2401 1.4946 -2.2406 37 1 2.2044 1.8704 -4.4254 38 1 0.6300 2.1901 -3.6590 39 1 1.5978 4.1502 -2.4885 40 1 3.1722 3.8305 -3.2548 41 1 1.9084 5.4777 -4.4707 42 1 2.0610 4.1064 -5.3989 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693954878.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:14 Heat of formation + Delta-G solvation = -31.263252 kcal Electronic energy + Delta-G solvation = -18621.707619 eV Core-core repulsion = 16020.963779 eV Total energy + Delta-G solvation = -2600.743840 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.61423 -36.94054 -36.05622 -34.10555 -33.67010 -30.65591 -30.13340 -27.25821 -26.07625 -25.06702 -23.05562 -21.95388 -21.44552 -20.02969 -18.61453 -17.25995 -16.90999 -16.41108 -16.09786 -15.76869 -15.32854 -15.18038 -14.86556 -14.61243 -14.42792 -14.06397 -13.72276 -13.63311 -13.18078 -13.03723 -12.77976 -12.55991 -12.35877 -12.18436 -12.10005 -11.72694 -11.68837 -11.56937 -11.41783 -11.20424 -10.87095 -10.74782 -10.66575 -9.61203 -8.85036 -8.27532 -6.28631 1.27352 1.32711 1.42713 2.30777 3.06213 3.19209 3.66753 3.92095 3.96714 4.09217 4.18282 4.27178 4.30684 4.46014 4.49150 4.55147 4.57575 4.64730 4.68284 4.71680 4.79272 4.86904 4.99209 5.00761 5.08406 5.11352 5.17087 5.19906 5.27747 5.35766 5.43454 5.43832 5.49263 5.59518 5.70540 6.11217 6.22924 6.51985 6.62693 6.76665 6.82452 7.35666 8.89383 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017602 B = 0.009123 C = 0.006446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.330463 B = 3068.579552 C = 4342.882481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.182 3.818 3 H 0.042 0.958 4 C -0.499 4.499 5 H 0.039 0.961 6 C 0.012 3.988 7 N -0.950 5.950 8 Si 0.946 3.054 9 H -0.272 1.272 10 H -0.298 1.298 11 H -0.249 1.249 12 N -0.530 5.530 13 C 0.063 3.937 14 C -0.112 4.112 15 C -0.114 4.114 16 C -0.104 4.104 17 C 0.082 3.918 18 H 0.030 0.970 19 C -0.112 4.112 20 C -0.103 4.103 21 C 0.061 3.939 22 N -0.857 5.857 23 H 0.049 0.951 24 H 0.034 0.966 25 H 0.056 0.944 26 H 0.264 0.736 27 H 0.048 0.952 28 H 0.022 0.978 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.061 0.939 35 H 0.046 0.954 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.031 0.969 41 H 0.349 0.651 42 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.586 5.591 -18.201 19.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.074 3.926 3 H 0.060 0.940 4 C -0.537 4.537 5 H 0.057 0.943 6 C -0.185 4.185 7 N -0.591 5.591 8 Si 0.774 3.226 9 H -0.198 1.198 10 H -0.226 1.226 11 H -0.173 1.173 12 N -0.254 5.254 13 C -0.065 4.065 14 C -0.150 4.150 15 C -0.151 4.151 16 C -0.142 4.142 17 C -0.026 4.026 18 H 0.048 0.952 19 C -0.150 4.150 20 C -0.141 4.141 21 C -0.070 4.070 22 N -0.388 5.388 23 H 0.068 0.932 24 H 0.052 0.948 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.040 0.960 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.049 0.951 41 H 0.162 0.838 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.799 5.347 -17.798 18.671 hybrid contribution -0.245 0.562 1.052 1.218 sum -2.044 5.909 -16.746 17.875 Atomic orbital electron populations 1.22681 1.00655 1.00865 0.99601 1.19600 0.89363 0.95039 0.88595 0.94046 1.21228 1.30017 1.12416 0.90073 0.94304 1.25725 0.97506 0.99786 0.95467 1.70036 1.48058 1.42502 0.98470 0.85901 0.78978 0.80472 0.77267 1.19845 1.22581 1.17324 1.62003 1.59828 1.01963 1.01589 1.21933 0.96078 0.89830 0.98666 1.21591 1.00657 0.98610 0.94155 1.21559 1.00976 0.95586 0.97019 1.21640 1.00490 0.95651 0.96427 1.21695 0.96843 0.93395 0.90700 0.95190 1.21623 1.01154 0.94151 0.98102 1.21470 1.01444 0.93673 0.97508 1.21738 0.97614 0.94049 0.93609 1.58697 1.68119 1.07220 1.04768 0.93232 0.94761 0.92542 0.92673 0.93364 0.95961 0.90839 0.92390 0.92201 0.89990 0.89592 0.91982 0.93511 0.91948 0.90348 0.92055 0.92392 0.95107 0.83805 0.83890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.75 7.98 71.98 0.57 -7.18 16 2 C 0.18 8.58 1.56 44.17 0.07 8.65 16 3 H 0.04 2.00 4.90 -2.38 -0.01 1.99 16 4 C -0.50 -28.77 8.44 25.60 0.22 -28.55 16 5 H 0.04 2.51 7.04 -2.91 -0.02 2.49 16 6 C 0.01 0.70 5.45 84.65 0.46 1.16 16 7 N -0.95 -60.14 13.96 21.45 0.30 -59.84 16 8 Si 0.95 45.83 24.37 68.60 1.67 47.50 16 9 H -0.27 -12.68 6.86 99.48 0.68 -12.00 16 10 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 11 H -0.25 -11.19 6.54 99.48 0.65 -10.54 16 12 N -0.53 -21.59 4.47 -850.38 -3.80 -25.39 16 13 C 0.06 2.45 4.65 86.33 0.40 2.85 16 14 C -0.11 -3.36 6.09 30.65 0.19 -3.17 16 15 C -0.11 -2.74 6.00 30.68 0.18 -2.56 16 16 C -0.10 -2.64 5.06 30.65 0.16 -2.49 16 17 C 0.08 2.61 1.51 44.94 0.07 2.68 16 18 H 0.03 0.98 6.74 -2.39 -0.02 0.97 16 19 C -0.11 -3.35 4.40 30.60 0.13 -3.22 16 20 C -0.10 -2.34 5.05 30.59 0.15 -2.19 16 21 C 0.06 1.30 6.79 86.30 0.59 1.89 16 22 N -0.86 -15.09 9.62 -186.71 -1.80 -16.88 16 23 H 0.05 2.15 6.51 -2.39 -0.02 2.13 16 24 H 0.03 1.53 3.25 -2.39 -0.01 1.52 16 25 H 0.06 2.11 6.66 -2.38 -0.02 2.10 16 26 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 27 H 0.05 2.23 6.37 -2.39 -0.02 2.22 16 28 H 0.02 0.85 6.61 -2.39 -0.02 0.83 16 29 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.06 1.39 8.14 -2.39 -0.02 1.38 16 32 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.09 1.73 6.67 -2.39 -0.02 1.71 16 34 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.05 1.61 6.03 -2.39 -0.01 1.60 16 36 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.08 1.51 6.79 -2.39 -0.02 1.49 16 38 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 39 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.35 4.98 9.08 -89.70 -0.81 4.17 16 42 H 0.35 4.92 8.99 -89.69 -0.81 4.11 16 Total: -1.00 -65.86 303.14 -1.13 -66.99 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: -0.69 Total: 19.75 kcal Atomic # 6 Polarization: -35.31 SS G_CDS: 3.19 Total: -32.12 kcal Atomic # 7 Polarization: -96.82 SS G_CDS: -5.30 Total: -102.11 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.67 Total: 47.50 kcal Total: -65.86 -1.13 -66.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693954878.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.725 kcal (2) G-P(sol) polarization free energy of solvation -65.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds