Wall clock time and date at job start Mon Mar 30 2020 03:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.47182 * 2 1 4 4 C 1.50695 * 109.47177 * 120.01075 * 2 1 3 5 5 H 1.08005 * 120.00081 * 120.00062 * 4 2 1 6 6 C 1.37881 * 119.99975 * 299.99392 * 4 2 1 7 7 N 1.31516 * 119.99708 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00079 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47139 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47127 * 120.00115 * 8 6 4 11 11 H 1.48497 * 109.47290 * 240.00231 * 8 6 4 12 12 N 1.46902 * 109.46761 * 240.01007 * 2 1 3 13 13 C 1.46853 * 110.99845 * 298.49256 * 12 2 1 14 14 C 1.53040 * 109.52399 * 174.16265 * 13 12 2 15 15 C 1.53126 * 109.27542 * 59.17756 * 14 13 12 16 16 C 1.53114 * 109.16420 * 302.34583 * 15 14 13 17 17 C 1.46842 * 110.99917 * 174.28334 * 12 2 1 18 18 H 1.09004 * 109.46505 * 65.83430 * 17 12 2 19 19 C 1.52996 * 109.46483 * 305.85441 * 17 12 2 20 20 C 1.53001 * 109.47397 * 177.53908 * 19 17 12 21 21 C 1.52995 * 109.47127 * 179.55758 * 20 19 17 22 22 N 1.46904 * 109.47253 * 180.02562 * 21 20 19 23 23 H 1.09003 * 109.46680 * 307.67395 * 1 2 3 24 24 H 1.09000 * 109.46909 * 67.67645 * 1 2 3 25 25 H 1.09001 * 109.46761 * 187.67554 * 1 2 3 26 26 H 0.97000 * 119.99446 * 179.97438 * 7 6 4 27 27 H 1.09007 * 109.46277 * 294.17643 * 13 12 2 28 28 H 1.08996 * 109.46543 * 54.15689 * 13 12 2 29 29 H 1.08995 * 109.50301 * 179.11818 * 14 13 12 30 30 H 1.08995 * 109.50006 * 299.20280 * 14 13 12 31 31 H 1.08998 * 109.52146 * 62.25125 * 15 14 13 32 32 H 1.08998 * 109.51740 * 182.37625 * 15 14 13 33 33 H 1.09000 * 109.50174 * 297.71772 * 16 15 14 34 34 H 1.08998 * 109.50510 * 177.59891 * 16 15 14 35 35 H 1.08998 * 109.46894 * 57.53659 * 19 17 12 36 36 H 1.09007 * 109.47253 * 297.53729 * 19 17 12 37 37 H 1.09007 * 109.46935 * 59.55861 * 20 19 17 38 38 H 1.08994 * 109.47087 * 299.55810 * 20 19 17 39 39 H 1.08997 * 109.47590 * 60.00011 * 21 20 19 40 40 H 1.09004 * 109.47099 * 300.00018 * 21 20 19 41 41 H 1.00897 * 111.00047 * 180.02562 * 22 21 20 42 42 H 1.00907 * 110.99650 * 303.95033 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 1.2303 5 1 2.6533 -1.5887 1.1310 6 6 1.6994 -0.2397 2.4827 7 7 0.9430 0.8293 2.6035 8 14 2.3227 -1.1201 4.0077 9 1 3.1485 -2.2862 3.6033 10 1 3.1475 -0.1865 4.8159 11 1 1.1680 -1.5873 4.8162 12 7 2.0197 -0.6923 -1.1996 13 6 1.5784 -2.0929 -1.2158 14 6 1.9809 -2.7406 -2.5427 15 6 3.5019 -2.6632 -2.7021 16 6 3.9405 -1.1978 -2.6333 17 6 3.4811 -0.5948 -1.3038 18 1 3.9412 -1.1401 -0.4797 19 6 3.8999 0.8753 -1.2391 20 6 5.4260 0.9735 -1.2859 21 6 5.8444 2.4442 -1.2323 22 7 7.3097 2.5385 -1.2779 23 1 -0.3633 0.6281 0.8134 24 1 -0.3633 0.3903 -0.9507 25 1 -0.3633 -1.0185 0.1373 26 1 0.7084 1.1604 3.4846 27 1 2.0474 -2.6310 -0.3920 28 1 0.4947 -2.1336 -1.1060 29 1 1.6671 -3.7844 -2.5481 30 1 1.5008 -2.2119 -3.3661 31 1 3.9812 -3.2249 -1.9004 32 1 3.7890 -3.0855 -3.6651 33 1 3.4917 -0.6445 -3.4582 34 1 5.0267 -1.1394 -2.7035 35 1 3.5357 1.3163 -0.3112 36 1 3.4751 1.4118 -2.0876 37 1 5.7907 0.5254 -2.2103 38 1 5.8505 0.4437 -0.4332 39 1 5.4797 2.8922 -0.3080 40 1 5.4198 2.9740 -2.0851 41 1 7.6113 3.5007 -1.2433 42 1 7.7299 2.0012 -0.5342 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693954879.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:16 Heat of formation + Delta-G solvation = -38.600513 kcal Electronic energy + Delta-G solvation = -18671.652786 eV Core-core repulsion = 16070.590779 eV Total energy + Delta-G solvation = -2601.062007 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.37906 -36.89644 -35.98192 -33.83817 -33.58119 -30.10444 -30.07908 -27.23165 -25.99653 -25.00164 -22.80157 -21.69426 -21.39188 -20.48875 -18.04175 -17.17947 -16.85107 -16.30120 -16.15429 -15.52114 -15.30038 -14.97693 -14.72816 -14.52202 -14.43527 -13.88752 -13.35605 -13.15722 -13.01951 -12.95171 -12.60820 -12.41264 -12.21336 -12.17213 -12.05079 -11.99155 -11.74105 -11.50846 -11.45981 -11.19037 -10.90139 -10.67392 -10.38304 -9.64290 -8.87037 -8.03895 -6.24396 1.31535 1.35105 1.44161 2.37907 3.15268 3.33784 3.72173 3.99609 4.05006 4.14930 4.18876 4.29567 4.43223 4.57075 4.67477 4.72940 4.73928 4.86026 4.86896 4.99225 5.06777 5.07475 5.08468 5.12811 5.19761 5.24149 5.29433 5.30895 5.38062 5.47358 5.55722 5.57843 5.66046 5.75369 6.02537 6.19266 6.25608 6.43337 6.59241 6.77566 6.98207 7.45819 8.92003 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.014941 B = 0.009764 C = 0.007083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.589216 B = 2867.106773 C = 3952.179109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.206 3.794 3 H 0.022 0.978 4 C -0.540 4.540 5 H 0.043 0.957 6 C 0.022 3.978 7 N -0.912 5.912 8 Si 0.940 3.060 9 H -0.275 1.275 10 H -0.281 1.281 11 H -0.280 1.280 12 N -0.532 5.532 13 C 0.062 3.938 14 C -0.110 4.110 15 C -0.116 4.116 16 C -0.105 4.105 17 C 0.097 3.903 18 H 0.009 0.991 19 C -0.102 4.102 20 C -0.103 4.103 21 C 0.065 3.935 22 N -0.853 5.853 23 H 0.053 0.947 24 H 0.029 0.971 25 H 0.024 0.976 26 H 0.260 0.740 27 H 0.008 0.992 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.046 0.954 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.040 0.960 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.046 0.954 39 H 0.014 0.986 40 H 0.074 0.926 41 H 0.349 0.651 42 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.634 -1.716 -9.087 11.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.099 3.901 3 H 0.040 0.960 4 C -0.579 4.579 5 H 0.061 0.939 6 C -0.178 4.178 7 N -0.552 5.552 8 Si 0.767 3.233 9 H -0.200 1.200 10 H -0.207 1.207 11 H -0.206 1.206 12 N -0.256 5.256 13 C -0.066 4.066 14 C -0.147 4.147 15 C -0.154 4.154 16 C -0.143 4.143 17 C -0.012 4.012 18 H 0.027 0.973 19 C -0.140 4.140 20 C -0.142 4.142 21 C -0.066 4.066 22 N -0.383 5.383 23 H 0.072 0.928 24 H 0.048 0.952 25 H 0.043 0.957 26 H 0.070 0.930 27 H 0.027 0.973 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.058 0.942 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.065 0.935 39 H 0.033 0.967 40 H 0.093 0.907 41 H 0.162 0.838 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.276 -1.707 -10.086 12.553 hybrid contribution 0.161 -0.205 3.198 3.208 sum 7.437 -1.912 -6.888 10.316 Atomic orbital electron populations 1.21605 0.97925 0.99146 0.98726 1.19149 0.92054 0.93585 0.85305 0.96044 1.21894 1.30990 1.12210 0.92808 0.93886 1.25556 0.95314 0.95588 1.01310 1.70019 1.37555 1.23875 1.23715 0.85780 0.78225 0.78759 0.80524 1.19960 1.20662 1.20601 1.62425 1.10358 1.13319 1.39521 1.21912 0.99299 0.89060 0.96353 1.21591 0.96483 1.00054 0.96616 1.21556 0.95554 0.96405 1.01838 1.21659 1.00508 0.95838 0.96271 1.21379 0.88150 0.95476 0.96175 0.97261 1.21483 0.95490 0.96044 1.01024 1.21468 0.94391 0.96157 1.02136 1.21714 0.88535 0.96655 0.99726 1.58765 1.07072 1.17634 1.54814 0.92765 0.95161 0.95730 0.93041 0.97337 0.92483 0.90830 0.91253 0.93498 0.89814 0.91284 0.90599 0.94175 0.91814 0.90177 0.93498 0.96739 0.90705 0.83760 0.84397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.74 8.44 71.98 0.61 -5.13 16 2 C 0.21 10.40 1.98 44.17 0.09 10.49 16 3 H 0.02 1.20 5.83 -2.39 -0.01 1.19 16 4 C -0.54 -29.47 7.18 25.60 0.18 -29.28 16 5 H 0.04 2.41 5.84 -2.91 -0.02 2.39 16 6 C 0.02 1.21 5.30 84.66 0.45 1.66 16 7 N -0.91 -52.30 11.41 21.45 0.24 -52.05 16 8 Si 0.94 44.12 29.54 68.60 2.03 46.15 16 9 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 N -0.53 -22.66 4.47 -850.37 -3.80 -26.47 16 13 C 0.06 2.46 4.80 86.33 0.41 2.88 16 14 C -0.11 -3.28 6.09 30.65 0.19 -3.10 16 15 C -0.12 -3.18 6.00 30.67 0.18 -3.00 16 16 C -0.11 -3.11 5.05 30.65 0.15 -2.96 16 17 C 0.10 3.70 1.61 44.94 0.07 3.77 16 18 H 0.01 0.41 7.01 -2.38 -0.02 0.40 16 19 C -0.10 -3.71 4.38 30.59 0.13 -3.57 16 20 C -0.10 -3.06 5.19 30.59 0.16 -2.90 16 21 C 0.06 1.72 6.79 86.30 0.59 2.30 16 22 N -0.85 -18.82 9.62 -186.72 -1.80 -20.62 16 23 H 0.05 2.93 6.32 -2.39 -0.02 2.92 16 24 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.02 1.18 6.71 -2.39 -0.02 1.16 16 26 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 27 H 0.01 0.37 6.59 -2.38 -0.02 0.36 16 28 H 0.06 2.34 6.22 -2.39 -0.01 2.32 16 29 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.08 1.82 8.14 -2.39 -0.02 1.81 16 33 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.08 1.99 6.52 -2.39 -0.02 1.97 16 35 H 0.04 1.76 6.06 -2.39 -0.01 1.75 16 36 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 37 H 0.08 2.17 6.49 -2.38 -0.02 2.15 16 38 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 41 H 0.35 6.26 9.08 -89.70 -0.81 5.45 16 42 H 0.34 7.07 8.99 -89.69 -0.81 6.26 16 Total: -1.00 -59.54 310.56 -0.73 -60.27 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: -0.62 Total: 21.57 kcal Atomic # 6 Polarization: -32.07 SS G_CDS: 3.22 Total: -28.85 kcal Atomic # 7 Polarization: -93.79 SS G_CDS: -5.36 Total: -99.14 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -59.54 -0.73 -60.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693954879.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.674 kcal (2) G-P(sol) polarization free energy of solvation -59.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds