Wall clock time and date at job start Mon Mar 30 2020 03:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09006 * 109.47063 * 2 1 4 4 C 1.50697 * 109.47240 * 239.99828 * 2 1 3 5 5 H 1.08007 * 119.99672 * 239.99797 * 4 2 1 6 6 C 1.37876 * 120.00158 * 59.99963 * 4 2 1 7 7 N 1.31518 * 119.99735 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00176 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46866 * 60.00167 * 8 6 4 10 10 H 1.48495 * 109.47152 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47139 * 300.00225 * 8 6 4 12 12 N 1.46898 * 109.47172 * 119.99564 * 2 1 3 13 13 C 1.46906 * 110.99888 * 58.95532 * 12 2 1 14 14 C 1.46902 * 111.00283 * 295.00570 * 12 2 1 15 15 H 1.08996 * 110.64884 * 59.29546 * 14 12 2 16 16 C 1.54943 * 110.72254 * 296.14323 * 14 12 2 17 17 N 1.48531 * 103.23039 * 204.22871 * 16 14 12 18 18 C 1.46896 * 111.00045 * 159.72251 * 17 16 14 19 19 C 1.47898 * 105.81781 * 39.20567 * 17 16 14 20 20 C 1.52999 * 109.91793 * 94.02678 * 19 17 16 21 21 C 1.53002 * 109.91708 * 215.12003 * 19 17 16 22 22 C 1.54299 * 107.08848 * 334.52511 * 19 17 16 23 23 H 1.09006 * 109.47063 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47653 * 300.00325 * 1 2 3 25 25 H 1.09002 * 109.47210 * 60.00443 * 1 2 3 26 26 H 0.97001 * 119.99727 * 180.02562 * 7 6 4 27 27 H 1.09001 * 109.46544 * 60.00058 * 13 12 2 28 28 H 1.09001 * 109.47272 * 179.97438 * 13 12 2 29 29 H 1.09000 * 109.47033 * 300.00113 * 13 12 2 30 30 H 1.09004 * 110.66721 * 322.66812 * 16 14 12 31 31 H 1.09004 * 110.66695 * 85.78889 * 16 14 12 32 32 H 1.08995 * 109.47065 * 60.12241 * 18 17 16 33 33 H 1.08999 * 109.47055 * 180.12586 * 18 17 16 34 34 H 1.09001 * 109.47286 * 300.12345 * 18 17 16 35 35 H 1.09000 * 109.47330 * 61.44564 * 20 19 17 36 36 H 1.08999 * 109.47403 * 181.45032 * 20 19 17 37 37 H 1.09005 * 109.46992 * 301.45474 * 20 19 17 38 38 H 1.08996 * 109.47173 * 58.54687 * 21 19 17 39 39 H 1.09005 * 109.47074 * 178.55083 * 21 19 17 40 40 H 1.09002 * 109.47180 * 298.55105 * 21 19 17 41 41 H 1.09008 * 110.47425 * 242.53335 * 22 19 17 42 42 H 1.09000 * 110.28682 * 120.27033 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1312 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.8280 -2.5199 -4.0080 10 1 1.8279 -0.4194 -5.2203 11 1 3.8075 -1.1191 -4.0076 12 7 2.0196 -0.6924 1.1995 13 6 1.5282 -2.0761 1.2461 14 6 1.6485 0.0392 2.4181 15 1 0.5657 0.1397 2.4914 16 6 2.3317 1.4295 2.4523 17 7 2.3708 1.7535 3.9014 18 6 3.3844 2.7783 4.1845 19 6 2.6932 0.4847 4.5895 20 6 4.2029 0.3839 4.8166 21 6 1.9592 0.4179 5.9303 22 6 2.2191 -0.6619 3.6722 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 0.7089 1.1613 -3.4844 27 1 1.8762 -2.6150 0.3648 28 1 1.9059 -2.5657 2.1437 29 1 0.4384 -2.0742 1.2640 30 1 3.3405 1.3726 2.0434 31 1 1.7365 2.1641 1.9098 32 1 3.1467 3.6869 3.6314 33 1 3.3934 2.9950 5.2527 34 1 4.3652 2.4134 3.8795 35 1 4.5304 1.2062 5.4527 36 1 4.4350 -0.5647 5.3007 37 1 4.7189 0.4385 3.8580 38 1 0.8854 0.4965 5.7610 39 1 2.1815 -0.5307 6.4194 40 1 2.2879 1.2401 6.5659 41 1 1.4426 -1.2477 4.1643 42 1 3.0597 -1.2999 3.3995 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694097543.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:32 Heat of formation + Delta-G solvation = 14.692018 kcal Electronic energy + Delta-G solvation = -18791.578262 eV Core-core repulsion = 16192.827192 eV Total energy + Delta-G solvation = -2598.751070 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.71397 -36.72249 -32.87352 -32.14922 -30.59490 -28.45559 -27.23053 -25.63282 -25.30868 -24.92032 -23.31444 -21.00787 -18.68415 -18.39279 -16.20211 -15.89412 -15.34630 -14.69708 -14.37651 -14.03736 -13.56579 -13.50982 -12.91491 -12.86208 -12.80504 -12.34431 -12.07231 -11.64805 -11.57013 -11.37202 -11.14834 -11.09458 -11.00452 -10.78575 -10.73400 -10.60940 -10.38914 -10.35089 -10.04473 -9.98180 -9.61613 -8.82749 -8.35606 -8.13574 -7.10415 -5.98491 -4.02199 3.33473 3.37843 3.40607 4.17110 4.44089 4.84694 4.95063 5.12082 5.20759 5.33444 5.39463 5.58087 5.62158 5.67147 5.71882 5.77362 5.88368 5.93747 5.98255 6.09144 6.14065 6.18191 6.27400 6.29094 6.43116 6.46946 6.53282 6.64163 6.70969 6.88509 6.94017 7.15606 7.20491 7.33485 7.57623 7.75974 7.87081 8.16300 8.42210 8.64932 9.03579 9.62642 11.08527 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.037237 B = 0.006203 C = 0.006000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.761347 B = 4512.648088 C = 4665.455544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.211 3.789 3 H 0.041 0.959 4 C -0.500 4.500 5 H 0.061 0.939 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.529 5.529 13 C 0.035 3.965 14 C 0.080 3.920 15 H 0.047 0.953 16 C 0.050 3.950 17 N -0.516 5.516 18 C 0.015 3.985 19 C 0.087 3.913 20 C -0.166 4.166 21 C -0.126 4.126 22 C -0.114 4.114 23 H 0.029 0.971 24 H 0.009 0.991 25 H 0.087 0.913 26 H 0.260 0.740 27 H 0.072 0.928 28 H 0.042 0.958 29 H 0.017 0.983 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.033 0.967 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.049 0.951 41 H 0.063 0.937 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.970 -0.231 13.584 13.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.105 3.895 3 H 0.059 0.941 4 C -0.539 4.539 5 H 0.079 0.921 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.203 1.203 12 N -0.253 5.253 13 C -0.114 4.114 14 C -0.029 4.029 15 H 0.065 0.935 16 C -0.078 4.078 17 N -0.240 5.240 18 C -0.134 4.134 19 C -0.003 4.003 20 C -0.224 4.224 21 C -0.183 4.183 22 C -0.153 4.153 23 H 0.048 0.952 24 H 0.028 0.972 25 H 0.106 0.894 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.060 0.940 29 H 0.036 0.964 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.913 0.099 13.591 13.900 hybrid contribution 0.154 -0.635 -1.163 1.334 sum 3.068 -0.537 12.428 12.812 Atomic orbital electron populations 1.22391 1.00987 0.99281 1.00529 1.19289 0.89690 0.94649 0.85904 0.94147 1.21098 1.30562 1.12462 0.89781 0.92088 1.24921 0.95265 0.95135 0.98942 1.69881 1.37040 1.23019 1.23435 0.86602 0.79187 0.79614 0.82223 1.20404 1.21416 1.20302 1.62476 1.59232 1.01805 1.01814 1.22211 0.97200 0.91129 1.00831 1.22391 0.97141 0.92848 0.90568 0.93502 1.23161 1.00430 0.96703 0.87492 1.64812 1.44608 1.06807 1.07722 1.22519 0.93949 0.95770 1.01141 1.21827 0.93524 0.90172 0.94770 1.22408 0.96490 1.01696 1.01823 1.21733 1.00762 1.00591 0.95264 1.22646 1.00867 0.96700 0.95054 0.95188 0.97239 0.89433 0.92993 0.90944 0.93961 0.96422 0.92674 0.90284 0.91767 0.91946 0.94802 0.92456 0.92400 0.92227 0.92120 0.92822 0.93144 0.91861 0.90483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.23 8.29 37.15 0.31 -3.92 16 2 C 0.21 5.27 2.20 -68.87 -0.15 5.12 16 3 H 0.04 1.11 6.95 -51.93 -0.36 0.75 16 4 C -0.50 -13.65 7.94 -34.44 -0.27 -13.92 16 5 H 0.06 1.66 6.75 -52.48 -0.35 1.31 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -25.50 11.32 55.43 0.63 -24.87 16 8 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 12 N -0.53 -11.31 4.58 -226.07 -1.04 -12.35 16 13 C 0.03 0.69 8.66 60.07 0.52 1.21 16 14 C 0.08 1.49 2.43 -65.85 -0.16 1.33 16 15 H 0.05 0.94 6.49 -51.93 -0.34 0.60 16 16 C 0.05 0.90 5.05 -1.90 -0.01 0.89 16 17 N -0.52 -7.88 5.17 -222.98 -1.15 -9.03 16 18 C 0.02 0.19 8.32 60.06 0.50 0.69 16 19 C 0.09 1.20 0.89 -130.37 -0.12 1.08 16 20 C -0.17 -2.04 6.97 37.16 0.26 -1.78 16 21 C -0.13 -1.49 8.64 37.16 0.32 -1.17 16 22 C -0.11 -1.76 4.68 -25.21 -0.12 -1.88 16 23 H 0.03 0.71 6.38 -51.93 -0.33 0.38 16 24 H 0.01 0.20 6.53 -51.93 -0.34 -0.14 16 25 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 26 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.07 1.52 6.53 -51.93 -0.34 1.18 16 28 H 0.04 0.71 6.68 -51.93 -0.35 0.37 16 29 H 0.02 0.35 6.28 -51.93 -0.33 0.02 16 30 H 0.05 1.05 8.00 -51.93 -0.42 0.64 16 31 H 0.08 1.52 7.88 -51.93 -0.41 1.11 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.71 7.86 -51.93 -0.41 0.30 16 34 H 0.03 0.43 6.16 -51.93 -0.32 0.11 16 35 H 0.06 0.63 6.66 -51.93 -0.35 0.29 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.81 7.63 -51.93 -0.40 0.42 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.91 7.70 -51.92 -0.40 0.51 16 42 H 0.08 1.22 7.09 -51.93 -0.37 0.85 16 LS Contribution 307.96 15.07 4.64 4.64 Total: -1.00 -27.83 307.96 -8.32 -36.15 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -7.36 Total: -0.05 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: 0.98 Total: -10.84 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: -1.56 Total: -46.25 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.83 -8.32 -36.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694097543.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.840 kcal (2) G-P(sol) polarization free energy of solvation -27.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds