Wall clock time and date at job start Mon Mar 30 2020 03:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09006 * 109.47063 * 2 1 4 4 C 1.50697 * 109.47240 * 239.99828 * 2 1 3 5 5 H 1.08007 * 119.99672 * 239.99797 * 4 2 1 6 6 C 1.37876 * 120.00158 * 59.99963 * 4 2 1 7 7 N 1.31518 * 119.99735 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00176 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46866 * 60.00167 * 8 6 4 10 10 H 1.48495 * 109.47152 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47139 * 300.00225 * 8 6 4 12 12 N 1.46898 * 109.47172 * 119.99564 * 2 1 3 13 13 C 1.46906 * 110.99888 * 58.95532 * 12 2 1 14 14 C 1.46902 * 111.00283 * 295.00570 * 12 2 1 15 15 H 1.08996 * 110.64884 * 59.29546 * 14 12 2 16 16 C 1.54943 * 110.72254 * 296.14323 * 14 12 2 17 17 N 1.48531 * 103.23039 * 204.22871 * 16 14 12 18 18 C 1.46896 * 111.00045 * 159.72251 * 17 16 14 19 19 C 1.47898 * 105.81781 * 39.20567 * 17 16 14 20 20 C 1.52999 * 109.91793 * 94.02678 * 19 17 16 21 21 C 1.53002 * 109.91708 * 215.12003 * 19 17 16 22 22 C 1.54299 * 107.08848 * 334.52511 * 19 17 16 23 23 H 1.09006 * 109.47063 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47653 * 300.00325 * 1 2 3 25 25 H 1.09002 * 109.47210 * 60.00443 * 1 2 3 26 26 H 0.97001 * 119.99727 * 180.02562 * 7 6 4 27 27 H 1.09001 * 109.46544 * 60.00058 * 13 12 2 28 28 H 1.09001 * 109.47272 * 179.97438 * 13 12 2 29 29 H 1.09000 * 109.47033 * 300.00113 * 13 12 2 30 30 H 1.09004 * 110.66721 * 322.66812 * 16 14 12 31 31 H 1.09004 * 110.66695 * 85.78889 * 16 14 12 32 32 H 1.08995 * 109.47065 * 60.12241 * 18 17 16 33 33 H 1.08999 * 109.47055 * 180.12586 * 18 17 16 34 34 H 1.09001 * 109.47286 * 300.12345 * 18 17 16 35 35 H 1.09000 * 109.47330 * 61.44564 * 20 19 17 36 36 H 1.08999 * 109.47403 * 181.45032 * 20 19 17 37 37 H 1.09005 * 109.46992 * 301.45474 * 20 19 17 38 38 H 1.08996 * 109.47173 * 58.54687 * 21 19 17 39 39 H 1.09005 * 109.47074 * 178.55083 * 21 19 17 40 40 H 1.09002 * 109.47180 * 298.55105 * 21 19 17 41 41 H 1.09008 * 110.47425 * 242.53335 * 22 19 17 42 42 H 1.09000 * 110.28682 * 120.27033 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1312 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.8280 -2.5199 -4.0080 10 1 1.8279 -0.4194 -5.2203 11 1 3.8075 -1.1191 -4.0076 12 7 2.0196 -0.6924 1.1995 13 6 1.5282 -2.0761 1.2461 14 6 1.6485 0.0392 2.4181 15 1 0.5657 0.1397 2.4914 16 6 2.3317 1.4295 2.4523 17 7 2.3708 1.7535 3.9014 18 6 3.3844 2.7783 4.1845 19 6 2.6932 0.4847 4.5895 20 6 4.2029 0.3839 4.8166 21 6 1.9592 0.4179 5.9303 22 6 2.2191 -0.6619 3.6722 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 0.7089 1.1613 -3.4844 27 1 1.8762 -2.6150 0.3648 28 1 1.9059 -2.5657 2.1437 29 1 0.4384 -2.0742 1.2640 30 1 3.3405 1.3726 2.0434 31 1 1.7365 2.1641 1.9098 32 1 3.1467 3.6869 3.6314 33 1 3.3934 2.9950 5.2527 34 1 4.3652 2.4134 3.8795 35 1 4.5304 1.2062 5.4527 36 1 4.4350 -0.5647 5.3007 37 1 4.7189 0.4385 3.8580 38 1 0.8854 0.4965 5.7610 39 1 2.1815 -0.5307 6.4194 40 1 2.2879 1.2401 6.5659 41 1 1.4426 -1.2477 4.1643 42 1 3.0597 -1.2999 3.3995 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694097543.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:31 Heat of formation + Delta-G solvation = -3.813731 kcal Electronic energy + Delta-G solvation = -18792.380732 eV Core-core repulsion = 16192.827192 eV Total energy + Delta-G solvation = -2599.553539 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.01256 -38.38218 -34.83014 -33.28874 -32.16322 -30.23055 -28.21113 -27.34174 -27.06179 -26.26726 -24.74091 -22.70985 -20.27995 -19.62699 -18.22301 -17.42878 -16.69533 -16.55408 -15.54572 -15.45312 -15.19007 -14.94582 -14.50934 -14.23198 -14.06861 -13.76773 -13.37965 -13.23137 -12.98709 -12.84870 -12.69183 -12.54887 -12.52111 -12.38165 -12.23890 -12.08687 -11.97446 -11.91701 -11.69163 -11.44610 -11.25748 -10.86119 -10.47340 -9.34292 -8.85138 -8.09680 -6.20641 1.42843 1.44298 1.51843 2.43090 2.93456 3.19429 3.54594 3.68630 3.75293 4.06595 4.23349 4.37929 4.46518 4.49236 4.58058 4.62881 4.70595 4.71735 4.78897 4.84044 4.86898 4.88644 4.97316 4.99070 5.02979 5.07557 5.10628 5.12866 5.19190 5.25690 5.28906 5.51916 5.56649 5.71646 5.80556 5.98472 6.16018 6.24352 6.49899 6.78496 6.93414 7.48568 8.96384 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.037237 B = 0.006203 C = 0.006000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.761347 B = 4512.648088 C = 4665.455544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.218 3.782 3 H 0.009 0.991 4 C -0.516 4.516 5 H 0.057 0.943 6 C 0.011 3.989 7 N -0.922 5.922 8 Si 0.959 3.041 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.536 5.536 13 C 0.039 3.961 14 C 0.078 3.922 15 H 0.032 0.968 16 C 0.057 3.943 17 N -0.521 5.521 18 C 0.014 3.986 19 C 0.084 3.916 20 C -0.161 4.161 21 C -0.121 4.121 22 C -0.107 4.107 23 H 0.031 0.969 24 H 0.020 0.980 25 H 0.060 0.940 26 H 0.261 0.739 27 H 0.056 0.944 28 H 0.074 0.926 29 H 0.014 0.986 30 H 0.038 0.962 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.035 0.965 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.040 0.960 38 H 0.051 0.949 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.078 0.922 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.711 -1.204 15.294 15.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.111 3.889 3 H 0.027 0.973 4 C -0.554 4.554 5 H 0.075 0.925 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.784 3.216 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.260 5.260 13 C -0.109 4.109 14 C -0.032 4.032 15 H 0.050 0.950 16 C -0.071 4.071 17 N -0.246 5.246 18 C -0.134 4.134 19 C -0.005 4.005 20 C -0.219 4.219 21 C -0.178 4.178 22 C -0.145 4.145 23 H 0.050 0.950 24 H 0.039 0.961 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.032 0.968 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.054 0.946 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.096 0.904 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.661 -0.882 15.324 15.780 hybrid contribution -0.075 -0.302 -1.638 1.667 sum 3.586 -1.184 13.686 14.198 Atomic orbital electron populations 1.22187 1.00787 0.98993 0.99706 1.19007 0.89641 0.93152 0.87142 0.97340 1.21383 1.30601 1.12486 0.90970 0.92453 1.25695 0.95424 0.95804 1.01841 1.70018 1.37930 1.24210 1.24000 0.85604 0.78665 0.78701 0.78599 1.19599 1.21097 1.19869 1.62381 1.59328 1.02597 1.01672 1.22199 0.96955 0.90104 1.01653 1.22432 0.96448 0.93481 0.90791 0.94981 1.22930 0.98810 0.95932 0.89426 1.64831 1.45973 1.08165 1.05586 1.22593 0.93342 0.94924 1.02580 1.21961 0.94916 0.88502 0.95164 1.22356 0.94928 1.03311 1.01293 1.21701 0.99846 1.02209 0.94066 1.22628 1.01020 0.97244 0.93621 0.95019 0.96076 0.92113 0.93033 0.92533 0.90722 0.96796 0.94391 0.92669 0.92065 0.89561 0.94619 0.90858 0.90776 0.94127 0.93018 0.90840 0.92005 0.90356 0.90637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.90 8.29 71.98 0.60 -7.30 16 2 C 0.22 11.19 2.20 44.17 0.10 11.29 16 3 H 0.01 0.50 6.95 -2.38 -0.02 0.48 16 4 C -0.52 -28.62 7.94 25.60 0.20 -28.41 16 5 H 0.06 3.16 6.75 -2.91 -0.02 3.14 16 6 C 0.01 0.60 5.30 84.65 0.45 1.05 16 7 N -0.92 -53.71 11.32 21.45 0.24 -53.46 16 8 Si 0.96 44.07 29.54 68.60 2.03 46.09 16 9 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 10 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 12 N -0.54 -23.07 4.58 -869.14 -3.98 -27.05 16 13 C 0.04 1.51 8.66 127.69 1.11 2.62 16 14 C 0.08 2.89 2.43 46.12 0.11 3.00 16 15 H 0.03 1.29 6.49 -2.39 -0.02 1.28 16 16 C 0.06 2.11 5.05 86.65 0.44 2.55 16 17 N -0.52 -15.37 5.17 -859.36 -4.45 -19.82 16 18 C 0.01 0.34 8.32 127.69 1.06 1.40 16 19 C 0.08 2.11 0.89 3.78 0.00 2.12 16 20 C -0.16 -3.50 6.97 71.98 0.50 -3.00 16 21 C -0.12 -2.45 8.64 71.98 0.62 -1.82 16 22 C -0.11 -3.08 4.68 31.58 0.15 -2.94 16 23 H 0.03 1.52 6.38 -2.38 -0.02 1.51 16 24 H 0.02 0.96 6.53 -2.38 -0.02 0.94 16 25 H 0.06 3.38 6.07 -2.39 -0.01 3.36 16 26 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 27 H 0.06 2.35 6.53 -2.39 -0.02 2.33 16 28 H 0.07 2.38 6.68 -2.39 -0.02 2.36 16 29 H 0.01 0.54 6.28 -2.39 -0.01 0.52 16 30 H 0.04 1.50 8.00 -2.39 -0.02 1.48 16 31 H 0.05 2.24 7.88 -2.39 -0.02 2.22 16 32 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.09 1.69 7.86 -2.39 -0.02 1.67 16 34 H 0.04 0.86 6.16 -2.39 -0.01 0.84 16 35 H 0.07 1.36 6.66 -2.39 -0.02 1.35 16 36 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.04 1.04 7.63 -2.38 -0.02 1.02 16 38 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.08 2.02 7.70 -2.38 -0.02 2.01 16 42 H 0.08 2.22 7.09 -2.39 -0.02 2.20 16 Total: -1.00 -60.23 307.96 0.15 -60.08 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 0.97 Total: 13.61 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: 5.34 Total: -19.45 kcal Atomic # 7 Polarization: -92.15 SS G_CDS: -8.18 Total: -100.33 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -60.23 0.15 -60.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694097543.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.262 kcal (2) G-P(sol) polarization free energy of solvation -60.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds