Wall clock time and date at job start Mon Mar 30 2020 03:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46896 * 109.47046 * 2 1 4 4 C 1.47910 * 110.99835 * 174.68989 * 3 2 1 5 5 C 1.53997 * 107.05391 * 214.15870 * 4 3 2 6 6 C 1.54595 * 105.14340 * 1.22420 * 5 4 3 7 7 H 1.09005 * 110.72453 * 263.42401 * 6 5 4 8 8 N 1.46901 * 110.72505 * 140.31837 * 6 5 4 9 9 C 1.46899 * 110.99770 * 59.06354 * 8 6 5 10 10 C 1.46896 * 111.00069 * 183.01949 * 8 6 5 11 11 C 1.52994 * 109.47294 * 169.99652 * 10 8 6 12 12 C 1.52999 * 109.47359 * 180.02562 * 11 10 8 13 13 C 1.50706 * 109.47070 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00006 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99858 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00019 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00187 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47133 * 89.99887 * 17 15 13 19 19 H 1.48500 * 109.47136 * 210.00219 * 17 15 13 20 20 H 1.48503 * 109.46826 * 329.99917 * 17 15 13 21 21 C 1.48533 * 110.99926 * 57.29458 * 3 2 1 22 22 H 1.08999 * 109.47425 * 57.83018 * 1 2 3 23 23 H 1.09002 * 109.46908 * 177.83301 * 1 2 3 24 24 H 1.08996 * 109.47187 * 297.82906 * 1 2 3 25 25 H 1.09001 * 109.46887 * 240.00619 * 2 1 3 26 26 H 1.08993 * 109.47590 * 120.00427 * 2 1 3 27 27 H 1.08994 * 109.91764 * 333.51075 * 4 3 2 28 28 H 1.08994 * 109.91519 * 94.60895 * 4 3 2 29 29 H 1.09000 * 110.30754 * 120.14201 * 5 4 3 30 30 H 1.09008 * 110.30787 * 242.20823 * 5 4 3 31 31 H 1.09000 * 109.47135 * 61.65577 * 9 8 6 32 32 H 1.09003 * 109.46807 * 181.65015 * 9 8 6 33 33 H 1.08990 * 109.47539 * 301.64833 * 9 8 6 34 34 H 1.09000 * 109.47378 * 290.00292 * 10 8 6 35 35 H 1.09004 * 109.46989 * 50.00097 * 10 8 6 36 36 H 1.09000 * 109.47430 * 300.00608 * 11 10 8 37 37 H 1.09000 * 109.46961 * 59.99834 * 11 10 8 38 38 H 1.08999 * 109.47365 * 300.00102 * 12 11 10 39 39 H 1.09004 * 109.46959 * 60.00423 * 12 11 10 40 40 H 0.97003 * 120.00233 * 179.97438 * 16 15 13 41 41 H 1.08995 * 110.66852 * 278.15351 * 21 3 2 42 42 H 1.09002 * 110.66548 * 41.28446 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4926 1.4264 0.1278 5 6 3.8395 2.6817 0.9495 6 6 2.4776 3.3233 1.3013 7 1 2.2306 4.1158 0.5948 8 7 2.4858 3.8394 2.6766 9 6 3.5424 4.8442 2.8554 10 6 1.1722 4.3861 3.0416 11 6 1.1422 4.6826 4.5422 12 6 -0.2263 5.2514 4.9225 13 6 -0.2560 5.5428 6.4008 14 1 0.6143 5.3427 7.0082 15 6 -1.3939 6.0658 6.9776 16 7 -2.4534 6.3100 6.2378 17 14 -1.4305 6.4277 8.8098 18 1 -0.9697 7.8189 9.0489 19 1 -2.8172 6.2713 9.3176 20 1 -0.5338 5.4803 9.5195 21 6 1.4906 2.1365 1.1668 22 1 -0.3634 0.5471 -0.8699 23 1 -0.3633 -1.0270 -0.0389 24 1 -0.3633 0.4797 0.9088 25 1 1.8932 -0.5137 -0.8901 26 1 1.8933 -0.5138 0.8899 27 1 3.8456 0.5345 0.6454 28 1 3.9493 1.4875 -0.8599 29 1 4.3726 2.4034 1.8586 30 1 4.4408 3.3692 0.3544 31 1 3.3566 5.6889 2.1920 32 1 3.5452 5.1883 3.8897 33 1 4.5093 4.4011 2.6174 34 1 0.9946 5.3068 2.4857 35 1 0.3963 3.6599 2.7991 36 1 1.3198 3.7619 5.0981 37 1 1.9181 5.4087 4.7847 38 1 -0.4043 6.1720 4.3667 39 1 -1.0019 4.5248 4.6801 40 1 -3.2541 6.6776 6.6436 41 1 0.4813 2.4964 0.9672 42 1 1.5091 1.5173 2.0637 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695541495.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:43 Heat of formation + Delta-G solvation = -6.238658 kcal Electronic energy + Delta-G solvation = -17623.838862 eV Core-core repulsion = 15024.180169 eV Total energy + Delta-G solvation = -2599.658692 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.50665 -36.81097 -33.85426 -32.69179 -31.06913 -28.94832 -28.40052 -26.83998 -24.82560 -23.18634 -21.88370 -20.67477 -19.92583 -19.78137 -16.44906 -16.23703 -16.03823 -15.25852 -14.51695 -14.32153 -14.17762 -13.90662 -13.66193 -13.32756 -13.07808 -12.41848 -12.26851 -12.02405 -11.80984 -11.48597 -11.46729 -11.27852 -11.21150 -11.03980 -10.89216 -10.78565 -10.66859 -10.46613 -10.38629 -9.57008 -9.29602 -9.02490 -8.51765 -8.31602 -8.06180 -5.96916 -3.98875 3.33859 3.39920 3.43714 3.75906 4.30824 4.49209 4.58833 4.63815 4.97190 5.03046 5.15167 5.30500 5.37579 5.38809 5.41075 5.54635 5.57979 5.67200 5.71168 5.79495 5.82731 5.85609 5.92465 5.96909 6.01078 6.09042 6.14792 6.18904 6.36532 6.69543 6.73522 6.85666 6.95077 7.15675 7.39764 7.43694 7.71767 7.87022 8.03756 8.47203 9.08350 9.64987 11.14555 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.031362 B = 0.004394 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.593761 B = 6370.243682 C = 6985.316502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.044 3.956 3 N -0.521 5.521 4 C 0.039 3.961 5 C -0.124 4.124 6 C 0.078 3.922 7 H 0.052 0.948 8 N -0.536 5.536 9 C 0.023 3.977 10 C 0.055 3.945 11 C -0.104 4.104 12 C 0.022 3.978 13 C -0.518 4.518 14 H 0.055 0.945 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.045 3.955 22 H 0.063 0.937 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.034 0.966 27 H 0.044 0.956 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.021 0.979 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.029 0.971 35 H 0.069 0.931 36 H 0.054 0.946 37 H 0.047 0.953 38 H 0.013 0.987 39 H 0.015 0.985 40 H 0.260 0.740 41 H 0.082 0.918 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.768 -9.782 -12.920 19.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.084 4.084 3 N -0.245 5.245 4 C -0.089 4.089 5 C -0.162 4.162 6 C -0.031 4.031 7 H 0.069 0.931 8 N -0.261 5.261 9 C -0.125 4.125 10 C -0.072 4.072 11 C -0.142 4.142 12 C -0.016 4.016 13 C -0.556 4.556 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.083 4.083 22 H 0.082 0.918 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.040 0.960 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.047 0.953 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.032 0.968 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.100 0.900 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.513 -9.897 -13.095 19.492 hybrid contribution -0.054 0.551 1.200 1.322 sum 10.459 -9.346 -11.894 18.391 Atomic orbital electron populations 1.21826 0.94678 1.01732 1.02820 1.22234 0.96325 0.89300 1.00583 1.64802 1.06019 1.12978 1.40744 1.22809 0.88855 0.97412 0.99868 1.22470 0.97273 0.96551 0.99926 1.22494 0.94903 0.96030 0.89680 0.93054 1.62175 1.05885 1.36583 1.21428 1.22397 0.94588 0.93316 1.02190 1.22326 0.88822 0.97512 0.98584 1.21649 1.00586 1.00256 0.91731 1.19075 0.90584 0.95802 0.96134 1.21254 0.98745 1.41755 0.93850 0.92715 1.25023 0.95713 0.95782 0.97972 1.69968 1.03348 1.44844 1.35459 0.86607 0.77189 0.78634 0.85654 1.20716 1.21246 1.19868 1.23222 0.98557 0.94541 0.91989 0.91833 0.92307 0.92267 0.90926 0.94737 0.93770 0.90625 0.90311 0.91405 0.96004 0.90586 0.92009 0.95296 0.91222 0.92714 0.93441 0.96841 0.96639 0.93063 0.90008 0.92352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.64 37.16 0.36 -1.14 16 2 C 0.04 0.45 5.59 -3.83 -0.02 0.43 16 3 N -0.52 -6.13 5.36 -230.46 -1.24 -7.36 16 4 C 0.04 0.41 6.70 -2.75 -0.02 0.39 16 5 C -0.12 -1.37 5.43 -25.37 -0.14 -1.51 16 6 C 0.08 1.05 2.75 -65.85 -0.18 0.87 16 7 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 8 N -0.54 -8.19 4.60 -232.66 -1.07 -9.26 16 9 C 0.02 0.32 9.10 60.06 0.55 0.87 16 10 C 0.05 0.97 4.84 -3.83 -0.02 0.96 16 11 C -0.10 -2.21 5.08 -26.73 -0.14 -2.34 16 12 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 13 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 14 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 17 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 C 0.04 0.59 3.79 -1.90 -0.01 0.58 16 22 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.64 7.00 -51.93 -0.36 0.28 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.03 0.36 7.95 -51.93 -0.41 -0.06 16 27 H 0.04 0.44 7.65 -51.93 -0.40 0.04 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.08 0.90 7.56 -51.93 -0.39 0.50 16 30 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 31 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 1.12 6.37 -51.93 -0.33 0.79 16 33 H 0.06 0.73 6.78 -51.93 -0.35 0.37 16 34 H 0.03 0.53 8.12 -51.93 -0.42 0.10 16 35 H 0.07 1.24 6.73 -51.93 -0.35 0.89 16 36 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.05 0.99 6.51 -51.93 -0.34 0.65 16 38 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.08 1.12 7.33 -51.93 -0.38 0.74 16 42 H 0.06 0.83 8.02 -51.93 -0.42 0.41 16 LS Contribution 324.05 15.07 4.88 4.88 Total: -1.00 -30.05 324.05 -9.79 -39.85 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -7.92 Total: -4.27 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -0.16 Total: -14.17 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: -1.57 Total: -43.18 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.05 -9.79 -39.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695541495.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.609 kcal (2) G-P(sol) polarization free energy of solvation -30.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds