Wall clock time and date at job start Mon Mar 30 2020 03:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46896 * 109.47046 * 2 1 4 4 C 1.47910 * 110.99835 * 174.68989 * 3 2 1 5 5 C 1.53997 * 107.05391 * 214.15870 * 4 3 2 6 6 C 1.54595 * 105.14340 * 1.22420 * 5 4 3 7 7 H 1.09005 * 110.72453 * 263.42401 * 6 5 4 8 8 N 1.46901 * 110.72505 * 140.31837 * 6 5 4 9 9 C 1.46899 * 110.99770 * 59.06354 * 8 6 5 10 10 C 1.46896 * 111.00069 * 183.01949 * 8 6 5 11 11 C 1.52994 * 109.47294 * 169.99652 * 10 8 6 12 12 C 1.52999 * 109.47359 * 180.02562 * 11 10 8 13 13 C 1.50706 * 109.47070 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00006 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99858 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00019 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00187 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47133 * 89.99887 * 17 15 13 19 19 H 1.48500 * 109.47136 * 210.00219 * 17 15 13 20 20 H 1.48503 * 109.46826 * 329.99917 * 17 15 13 21 21 C 1.48533 * 110.99926 * 57.29458 * 3 2 1 22 22 H 1.08999 * 109.47425 * 57.83018 * 1 2 3 23 23 H 1.09002 * 109.46908 * 177.83301 * 1 2 3 24 24 H 1.08996 * 109.47187 * 297.82906 * 1 2 3 25 25 H 1.09001 * 109.46887 * 240.00619 * 2 1 3 26 26 H 1.08993 * 109.47590 * 120.00427 * 2 1 3 27 27 H 1.08994 * 109.91764 * 333.51075 * 4 3 2 28 28 H 1.08994 * 109.91519 * 94.60895 * 4 3 2 29 29 H 1.09000 * 110.30754 * 120.14201 * 5 4 3 30 30 H 1.09008 * 110.30787 * 242.20823 * 5 4 3 31 31 H 1.09000 * 109.47135 * 61.65577 * 9 8 6 32 32 H 1.09003 * 109.46807 * 181.65015 * 9 8 6 33 33 H 1.08990 * 109.47539 * 301.64833 * 9 8 6 34 34 H 1.09000 * 109.47378 * 290.00292 * 10 8 6 35 35 H 1.09004 * 109.46989 * 50.00097 * 10 8 6 36 36 H 1.09000 * 109.47430 * 300.00608 * 11 10 8 37 37 H 1.09000 * 109.46961 * 59.99834 * 11 10 8 38 38 H 1.08999 * 109.47365 * 300.00102 * 12 11 10 39 39 H 1.09004 * 109.46959 * 60.00423 * 12 11 10 40 40 H 0.97003 * 120.00233 * 179.97438 * 16 15 13 41 41 H 1.08995 * 110.66852 * 278.15351 * 21 3 2 42 42 H 1.09002 * 110.66548 * 41.28446 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4926 1.4264 0.1278 5 6 3.8395 2.6817 0.9495 6 6 2.4776 3.3233 1.3013 7 1 2.2306 4.1158 0.5948 8 7 2.4858 3.8394 2.6766 9 6 3.5424 4.8442 2.8554 10 6 1.1722 4.3861 3.0416 11 6 1.1422 4.6826 4.5422 12 6 -0.2263 5.2514 4.9225 13 6 -0.2560 5.5428 6.4008 14 1 0.6143 5.3427 7.0082 15 6 -1.3939 6.0658 6.9776 16 7 -2.4534 6.3100 6.2378 17 14 -1.4305 6.4277 8.8098 18 1 -0.9697 7.8189 9.0489 19 1 -2.8172 6.2713 9.3176 20 1 -0.5338 5.4803 9.5195 21 6 1.4906 2.1365 1.1668 22 1 -0.3634 0.5471 -0.8699 23 1 -0.3633 -1.0270 -0.0389 24 1 -0.3633 0.4797 0.9088 25 1 1.8932 -0.5137 -0.8901 26 1 1.8933 -0.5138 0.8899 27 1 3.8456 0.5345 0.6454 28 1 3.9493 1.4875 -0.8599 29 1 4.3726 2.4034 1.8586 30 1 4.4408 3.3692 0.3544 31 1 3.3566 5.6889 2.1920 32 1 3.5452 5.1883 3.8897 33 1 4.5093 4.4011 2.6174 34 1 0.9946 5.3068 2.4857 35 1 0.3963 3.6599 2.7991 36 1 1.3198 3.7619 5.0981 37 1 1.9181 5.4087 4.7847 38 1 -0.4043 6.1720 4.3667 39 1 -1.0019 4.5248 4.6801 40 1 -3.2541 6.6776 6.6436 41 1 0.4813 2.4964 0.9672 42 1 1.5091 1.5173 2.0637 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695541495.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:42 Heat of formation + Delta-G solvation = -26.065508 kcal Electronic energy + Delta-G solvation = -17624.698618 eV Core-core repulsion = 15024.180169 eV Total energy + Delta-G solvation = -2600.518449 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.52363 -38.03451 -35.70070 -34.03477 -32.72430 -29.94717 -29.49529 -28.43689 -26.31960 -24.51073 -23.22785 -21.74699 -21.39915 -20.94590 -18.48199 -17.35502 -17.17996 -16.54254 -16.32087 -15.59179 -15.49172 -14.91229 -14.80724 -14.46112 -14.27830 -14.11798 -13.63258 -13.34815 -13.19912 -12.80264 -12.69371 -12.61431 -12.53531 -12.38567 -12.20768 -12.06907 -11.92697 -11.78808 -11.65454 -11.39570 -11.30946 -11.05584 -10.54996 -9.42503 -9.30705 -8.19992 -6.31196 1.39954 1.41535 1.52856 2.40907 2.72959 3.13105 3.27230 3.58648 3.71238 4.08058 4.15431 4.20905 4.27475 4.30813 4.34789 4.47975 4.56857 4.59784 4.67853 4.71485 4.73915 4.86663 4.90059 4.93537 4.94012 5.03337 5.04854 5.07704 5.14976 5.16820 5.26797 5.30904 5.51936 5.73436 5.82933 5.85896 6.01879 6.11905 6.22806 6.28047 6.85473 7.38105 8.92033 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.031362 B = 0.004394 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.593761 B = 6370.243682 C = 6985.316502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.043 3.957 3 N -0.528 5.528 4 C 0.039 3.961 5 C -0.116 4.116 6 C 0.076 3.924 7 H 0.045 0.955 8 N -0.540 5.540 9 C 0.023 3.977 10 C 0.067 3.933 11 C -0.088 4.088 12 C 0.026 3.974 13 C -0.542 4.542 14 H 0.059 0.941 15 C -0.001 4.001 16 N -0.934 5.934 17 Si 0.966 3.034 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.263 1.263 21 C 0.049 3.951 22 H 0.059 0.941 23 H 0.074 0.926 24 H 0.042 0.958 25 H 0.089 0.911 26 H 0.034 0.966 27 H 0.051 0.949 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.023 0.977 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.022 0.978 35 H 0.065 0.935 36 H 0.050 0.950 37 H 0.052 0.948 38 H -0.011 1.011 39 H -0.009 1.009 40 H 0.264 0.736 41 H 0.069 0.931 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.382 -10.417 -12.904 20.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.085 4.085 3 N -0.253 5.253 4 C -0.089 4.089 5 C -0.154 4.154 6 C -0.033 4.033 7 H 0.063 0.937 8 N -0.264 5.264 9 C -0.125 4.125 10 C -0.061 4.061 11 C -0.126 4.126 12 C -0.012 4.012 13 C -0.580 4.580 14 H 0.077 0.923 15 C -0.198 4.198 16 N -0.574 5.574 17 Si 0.790 3.210 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.188 1.188 21 C -0.079 4.079 22 H 0.078 0.922 23 H 0.093 0.907 24 H 0.061 0.939 25 H 0.108 0.892 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.110 0.890 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.042 0.958 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.040 0.960 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.008 0.992 39 H 0.009 0.991 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 12.151 -10.541 -13.091 20.740 hybrid contribution -0.565 0.729 1.138 1.465 sum 11.586 -9.812 -11.953 19.323 Atomic orbital electron populations 1.21810 0.94732 1.02530 1.01771 1.22304 0.96332 0.88557 1.01313 1.64826 1.07009 1.13825 1.39683 1.22880 0.87918 0.97327 1.00744 1.22443 0.95763 0.96942 1.00293 1.22549 0.96731 0.95846 0.88196 0.93662 1.62125 1.04585 1.36732 1.22976 1.22450 0.95180 0.93286 1.01594 1.22027 0.90637 0.97256 0.96139 1.21386 0.97489 0.99678 0.94034 1.18972 0.92817 0.94224 0.95173 1.21681 0.99183 1.42077 0.95098 0.92278 1.25987 0.95172 0.95323 1.03336 1.70101 1.04062 1.45478 1.37794 0.85439 0.77522 0.78878 0.79170 1.19692 1.20663 1.18753 1.23085 0.98135 0.94587 0.92099 0.92176 0.90670 0.93922 0.89239 0.94800 0.93064 0.89040 0.90322 0.89762 0.95794 0.91687 0.89422 0.95950 0.91672 0.93090 0.92958 0.99234 0.99088 0.92766 0.91285 0.93721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.64 71.98 0.69 -2.17 16 2 C 0.04 0.81 5.59 86.30 0.48 1.29 16 3 N -0.53 -11.70 5.36 -883.04 -4.73 -16.43 16 4 C 0.04 0.72 6.70 86.45 0.58 1.30 16 5 C -0.12 -2.29 5.43 31.47 0.17 -2.11 16 6 C 0.08 1.95 2.75 46.12 0.13 2.07 16 7 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 8 N -0.54 -16.10 4.60 -889.99 -4.09 -20.19 16 9 C 0.02 0.59 9.10 127.69 1.16 1.75 16 10 C 0.07 2.44 4.84 86.30 0.42 2.85 16 11 C -0.09 -3.78 5.08 30.59 0.16 -3.63 16 12 C 0.03 1.40 4.97 29.85 0.15 1.55 16 13 C -0.54 -31.66 9.11 25.60 0.23 -31.43 16 14 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 15 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 16 N -0.93 -57.81 13.29 21.45 0.28 -57.52 16 17 Si 0.97 44.89 29.54 68.60 2.03 46.91 16 18 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 20 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 21 C 0.05 1.28 3.79 86.65 0.33 1.61 16 22 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.04 0.94 7.00 -2.39 -0.02 0.92 16 25 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.03 0.65 7.95 -2.39 -0.02 0.63 16 27 H 0.05 0.88 7.65 -2.39 -0.02 0.86 16 28 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.08 1.58 7.56 -2.39 -0.02 1.56 16 30 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 1.84 6.37 -2.39 -0.02 1.82 16 33 H 0.09 1.83 6.78 -2.39 -0.02 1.82 16 34 H 0.02 0.83 8.12 -2.39 -0.02 0.81 16 35 H 0.06 2.40 6.73 -2.39 -0.02 2.38 16 36 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.05 2.18 6.51 -2.39 -0.02 2.17 16 38 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 39 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 40 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 41 H 0.07 1.94 7.33 -2.39 -0.02 1.92 16 42 H 0.04 1.28 8.02 -2.39 -0.02 1.26 16 Total: -1.00 -64.39 324.05 -0.61 -65.00 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: 0.94 Total: 8.70 kcal Atomic # 6 Polarization: -31.43 SS G_CDS: 4.96 Total: -26.47 kcal Atomic # 7 Polarization: -85.60 SS G_CDS: -8.54 Total: -94.15 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -64.39 -0.61 -65.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695541495.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.933 kcal (2) G-P(sol) polarization free energy of solvation -64.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds