Wall clock time and date at job start Mon Mar 30 2020 03:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46900 * 109.47344 * 2 1 4 4 C 1.46901 * 110.99715 * 292.12847 * 3 2 1 5 5 C 1.52999 * 109.46689 * 288.33297 * 4 3 2 6 6 C 1.50704 * 109.46727 * 185.35650 * 5 4 3 7 7 H 1.07995 * 120.00171 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99715 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00302 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00068 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47166 * 60.00204 * 10 8 6 12 12 H 1.48499 * 109.47455 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.46989 * 300.00079 * 10 8 6 14 14 C 1.46902 * 110.99608 * 56.07391 * 3 2 1 15 15 H 1.09000 * 110.90886 * 292.18147 * 14 3 2 16 16 C 1.55142 * 110.98888 * 168.31331 * 14 3 2 17 17 C 1.54319 * 103.02383 * 206.25689 * 16 14 3 18 18 N 1.47447 * 107.22913 * 22.28580 * 17 16 14 19 19 C 1.46899 * 110.99788 * 123.25914 * 18 17 16 20 20 C 1.52997 * 109.47328 * 54.39857 * 19 18 17 21 21 C 1.47845 * 108.56969 * 0.98801 * 18 17 16 22 22 H 1.08997 * 109.47541 * 62.46449 * 1 2 3 23 23 H 1.09001 * 109.46929 * 182.46523 * 1 2 3 24 24 H 1.09005 * 109.47143 * 302.46100 * 1 2 3 25 25 H 1.09001 * 109.46904 * 240.00084 * 2 1 3 26 26 H 1.09004 * 109.47138 * 119.99951 * 2 1 3 27 27 H 1.08998 * 109.47664 * 48.33795 * 4 3 2 28 28 H 1.09008 * 109.46965 * 168.34211 * 4 3 2 29 29 H 1.08997 * 109.47517 * 305.35810 * 5 4 3 30 30 H 1.09001 * 109.46905 * 65.36550 * 5 4 3 31 31 H 0.96998 * 120.00429 * 179.97438 * 9 8 6 32 32 H 1.08998 * 110.70231 * 87.87396 * 16 14 3 33 33 H 1.08995 * 110.85676 * 324.71382 * 16 14 3 34 34 H 1.09002 * 109.88788 * 262.88298 * 17 16 14 35 35 H 1.08998 * 110.02475 * 141.76168 * 17 16 14 36 36 H 1.09005 * 109.46648 * 174.39941 * 19 18 17 37 37 H 1.08998 * 109.47006 * 294.39509 * 19 18 17 38 38 H 1.08994 * 109.47038 * 176.76382 * 20 19 18 39 39 H 1.08999 * 109.46721 * 296.76563 * 20 19 18 40 40 H 1.09000 * 109.47214 * 56.76697 * 20 19 18 41 41 H 1.09010 * 110.37268 * 94.73059 * 21 18 17 42 42 H 1.08997 * 110.37649 * 217.07344 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7081 2.0535 -1.2704 5 6 2.5969 1.4837 -2.3778 6 6 2.3716 2.2579 -3.6510 7 1 1.6655 3.0749 -3.6684 8 6 3.0670 1.9232 -4.7936 9 7 3.9265 0.9280 -4.7725 10 14 2.7883 2.8833 -6.3715 11 1 3.1299 4.3112 -6.1490 12 1 3.6499 2.3295 -7.4467 13 1 1.3630 2.7721 -6.7734 14 6 1.4735 2.1364 1.1380 15 1 0.3991 2.2834 1.0274 16 6 2.2053 3.4934 1.3105 17 6 2.0306 3.7941 2.8140 18 7 1.7714 2.5091 3.4891 19 6 2.7573 2.2637 4.5501 20 6 2.7793 3.4540 5.5111 21 6 1.8021 1.4313 2.4776 22 1 -0.3634 0.4751 -0.9112 23 1 -0.3633 -1.0267 0.0442 24 1 -0.3634 0.5516 0.8671 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 0.6610 1.8854 -1.5223 28 1 1.8910 3.1236 -1.1723 29 1 3.6429 1.5661 -2.0827 30 1 2.3468 0.4354 -2.5411 31 1 4.4154 0.6923 -5.5764 32 1 1.7316 4.2664 0.7054 33 1 3.2611 3.4001 1.0563 34 1 1.1864 4.4676 2.9618 35 1 2.9392 4.2456 3.2124 36 1 2.4856 1.3605 5.0966 37 1 3.7446 2.1366 4.1063 38 1 3.4686 3.2473 6.3297 39 1 3.1065 4.3460 4.9771 40 1 1.7785 3.6166 5.9112 41 1 2.7929 0.9788 2.4352 42 1 1.0488 0.6768 2.7041 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695569703.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:44 Heat of formation + Delta-G solvation = -0.242218 kcal Electronic energy + Delta-G solvation = -18029.598626 eV Core-core repulsion = 15430.199959 eV Total energy + Delta-G solvation = -2599.398667 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.51113 -36.96751 -33.26174 -32.56851 -30.59163 -29.17399 -28.86034 -26.69033 -24.33325 -23.31260 -22.55629 -20.47027 -20.11699 -18.72413 -16.66615 -16.25294 -15.90490 -15.05367 -14.53276 -14.32780 -14.21524 -13.75189 -13.37839 -13.09352 -12.71860 -12.34673 -12.23454 -12.10238 -11.74929 -11.65858 -11.45075 -11.21122 -11.11809 -11.02245 -10.90197 -10.62676 -10.52552 -10.50632 -10.28976 -9.71092 -9.34813 -9.09964 -8.31500 -8.29274 -7.65721 -5.97543 -3.99850 3.34254 3.38675 3.40914 3.89778 4.43595 4.61928 4.72286 4.83519 5.03652 5.17281 5.26754 5.37883 5.38306 5.40039 5.50111 5.60618 5.62934 5.66463 5.77674 5.83132 5.89145 5.93133 6.04165 6.06441 6.15397 6.22011 6.23776 6.31064 6.44136 6.58329 6.70367 6.95552 7.03476 7.08317 7.54868 7.61903 7.83257 7.95018 8.12194 8.46132 9.07469 9.63585 11.13794 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.035318 B = 0.004903 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.615807 B = 5709.068364 C = 6089.330079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.049 3.951 3 N -0.528 5.528 4 C 0.060 3.940 5 C 0.031 3.969 6 C -0.522 4.522 7 H 0.052 0.948 8 C 0.059 3.941 9 N -0.894 5.894 10 Si 0.891 3.109 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.278 1.278 14 C 0.074 3.926 15 H 0.053 0.947 16 C -0.133 4.133 17 C 0.041 3.959 18 N -0.531 5.531 19 C 0.046 3.954 20 C -0.153 4.153 21 C 0.050 3.950 22 H 0.060 0.940 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.083 0.917 26 H 0.064 0.936 27 H 0.024 0.976 28 H 0.060 0.940 29 H 0.024 0.976 30 H 0.015 0.985 31 H 0.261 0.739 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.034 0.966 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.001 2.074 16.818 17.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.079 4.079 3 N -0.251 5.251 4 C -0.067 4.067 5 C -0.006 4.006 6 C -0.561 4.561 7 H 0.071 0.929 8 C -0.142 4.142 9 N -0.533 5.533 10 Si 0.719 3.281 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.203 1.203 14 C -0.036 4.036 15 H 0.070 0.930 16 C -0.172 4.172 17 C -0.087 4.087 18 N -0.256 5.256 19 C -0.083 4.083 20 C -0.210 4.210 21 C -0.077 4.077 22 H 0.079 0.921 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.102 0.898 26 H 0.082 0.918 27 H 0.042 0.958 28 H 0.078 0.922 29 H 0.042 0.958 30 H 0.033 0.967 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.053 0.947 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.836 1.981 17.007 17.547 hybrid contribution -0.220 0.456 -1.432 1.518 sum -4.055 2.437 15.576 16.278 Atomic orbital electron populations 1.22425 0.98895 1.01656 1.01954 1.22150 0.92400 0.90806 1.02544 1.62416 1.58045 1.01776 1.02888 1.22381 0.98270 0.97829 0.88207 1.19046 0.95111 0.95892 0.90575 1.21164 1.23479 1.16340 0.95070 0.92936 1.24981 0.95184 0.95205 0.98866 1.69961 1.26273 1.28335 1.28705 0.86678 0.78069 0.80291 0.83063 1.20254 1.21290 1.20316 1.22677 0.96812 0.93377 0.90703 0.92960 1.22805 1.02070 0.96957 0.95384 1.22850 1.00575 0.92174 0.93139 1.63667 1.47985 1.02459 1.11530 1.22229 0.93618 0.98944 0.93480 1.21889 1.02222 0.98011 0.98878 1.23045 1.01018 0.93794 0.89886 0.92130 0.92714 0.92904 0.89822 0.91775 0.95785 0.92189 0.95807 0.96707 0.92981 0.91007 0.90281 0.90902 0.92385 0.90980 0.94734 0.92396 0.92484 0.91922 0.92500 0.90731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.81 9.27 37.16 0.34 -2.47 16 2 C 0.05 0.81 5.61 -3.83 -0.02 0.79 16 3 N -0.53 -9.51 4.57 -224.09 -1.02 -10.53 16 4 C 0.06 1.26 4.71 -3.82 -0.02 1.24 16 5 C 0.03 0.81 4.92 -27.88 -0.14 0.68 16 6 C -0.52 -14.84 9.11 -34.44 -0.31 -15.16 16 7 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 8 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 9 N -0.89 -27.03 13.29 55.43 0.74 -26.29 16 10 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 C 0.07 1.13 1.91 -65.57 -0.13 1.00 16 15 H 0.05 0.83 6.74 -51.93 -0.35 0.48 16 16 C -0.13 -1.92 5.61 -24.91 -0.14 -2.06 16 17 C 0.04 0.50 6.18 -2.83 -0.02 0.48 16 18 N -0.53 -6.66 5.28 -231.24 -1.22 -7.89 16 19 C 0.05 0.49 5.57 -3.83 -0.02 0.46 16 20 C -0.15 -1.36 9.61 37.16 0.36 -1.00 16 21 C 0.05 0.68 4.88 -2.30 -0.01 0.67 16 22 H 0.06 0.99 6.51 -51.93 -0.34 0.65 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.05 0.73 6.07 -51.93 -0.32 0.42 16 25 H 0.08 1.56 6.53 -51.93 -0.34 1.22 16 26 H 0.06 0.94 7.17 -51.93 -0.37 0.57 16 27 H 0.02 0.51 6.18 -51.93 -0.32 0.18 16 28 H 0.06 1.27 6.84 -51.92 -0.36 0.91 16 29 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.01 0.41 6.83 -51.93 -0.35 0.05 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.07 1.02 7.81 -51.93 -0.41 0.62 16 33 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.65 5.95 -51.93 -0.31 0.34 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.03 0.39 7.97 -51.93 -0.41 -0.03 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.51 6.29 -51.93 -0.33 0.18 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.81 7.67 -51.92 -0.40 0.42 16 42 H 0.07 0.97 7.83 -51.93 -0.41 0.56 16 LS Contribution 316.22 15.07 4.77 4.77 Total: -1.00 -29.54 316.22 -9.47 -39.01 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -7.51 Total: -2.04 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: -0.20 Total: -13.76 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: -1.51 Total: -44.71 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.54 -9.47 -39.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695569703.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.764 kcal (2) G-P(sol) polarization free energy of solvation -29.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds