Wall clock time and date at job start Mon Mar 30 2020 03:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46900 * 109.47344 * 2 1 4 4 C 1.46901 * 110.99715 * 292.12847 * 3 2 1 5 5 C 1.52999 * 109.46689 * 288.33297 * 4 3 2 6 6 C 1.50704 * 109.46727 * 185.35650 * 5 4 3 7 7 H 1.07995 * 120.00171 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99715 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00302 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00068 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47166 * 60.00204 * 10 8 6 12 12 H 1.48499 * 109.47455 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.46989 * 300.00079 * 10 8 6 14 14 C 1.46902 * 110.99608 * 56.07391 * 3 2 1 15 15 H 1.09000 * 110.90886 * 292.18147 * 14 3 2 16 16 C 1.55142 * 110.98888 * 168.31331 * 14 3 2 17 17 C 1.54319 * 103.02383 * 206.25689 * 16 14 3 18 18 N 1.47447 * 107.22913 * 22.28580 * 17 16 14 19 19 C 1.46899 * 110.99788 * 123.25914 * 18 17 16 20 20 C 1.52997 * 109.47328 * 54.39857 * 19 18 17 21 21 C 1.47845 * 108.56969 * 0.98801 * 18 17 16 22 22 H 1.08997 * 109.47541 * 62.46449 * 1 2 3 23 23 H 1.09001 * 109.46929 * 182.46523 * 1 2 3 24 24 H 1.09005 * 109.47143 * 302.46100 * 1 2 3 25 25 H 1.09001 * 109.46904 * 240.00084 * 2 1 3 26 26 H 1.09004 * 109.47138 * 119.99951 * 2 1 3 27 27 H 1.08998 * 109.47664 * 48.33795 * 4 3 2 28 28 H 1.09008 * 109.46965 * 168.34211 * 4 3 2 29 29 H 1.08997 * 109.47517 * 305.35810 * 5 4 3 30 30 H 1.09001 * 109.46905 * 65.36550 * 5 4 3 31 31 H 0.96998 * 120.00429 * 179.97438 * 9 8 6 32 32 H 1.08998 * 110.70231 * 87.87396 * 16 14 3 33 33 H 1.08995 * 110.85676 * 324.71382 * 16 14 3 34 34 H 1.09002 * 109.88788 * 262.88298 * 17 16 14 35 35 H 1.08998 * 110.02475 * 141.76168 * 17 16 14 36 36 H 1.09005 * 109.46648 * 174.39941 * 19 18 17 37 37 H 1.08998 * 109.47006 * 294.39509 * 19 18 17 38 38 H 1.08994 * 109.47038 * 176.76382 * 20 19 18 39 39 H 1.08999 * 109.46721 * 296.76563 * 20 19 18 40 40 H 1.09000 * 109.47214 * 56.76697 * 20 19 18 41 41 H 1.09010 * 110.37268 * 94.73059 * 21 18 17 42 42 H 1.08997 * 110.37649 * 217.07344 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7081 2.0535 -1.2704 5 6 2.5969 1.4837 -2.3778 6 6 2.3716 2.2579 -3.6510 7 1 1.6655 3.0749 -3.6684 8 6 3.0670 1.9232 -4.7936 9 7 3.9265 0.9280 -4.7725 10 14 2.7883 2.8833 -6.3715 11 1 3.1299 4.3112 -6.1490 12 1 3.6499 2.3295 -7.4467 13 1 1.3630 2.7721 -6.7734 14 6 1.4735 2.1364 1.1380 15 1 0.3991 2.2834 1.0274 16 6 2.2053 3.4934 1.3105 17 6 2.0306 3.7941 2.8140 18 7 1.7714 2.5091 3.4891 19 6 2.7573 2.2637 4.5501 20 6 2.7793 3.4540 5.5111 21 6 1.8021 1.4313 2.4776 22 1 -0.3634 0.4751 -0.9112 23 1 -0.3633 -1.0267 0.0442 24 1 -0.3634 0.5516 0.8671 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 0.6610 1.8854 -1.5223 28 1 1.8910 3.1236 -1.1723 29 1 3.6429 1.5661 -2.0827 30 1 2.3468 0.4354 -2.5411 31 1 4.4154 0.6923 -5.5764 32 1 1.7316 4.2664 0.7054 33 1 3.2611 3.4001 1.0563 34 1 1.1864 4.4676 2.9618 35 1 2.9392 4.2456 3.2124 36 1 2.4856 1.3605 5.0966 37 1 3.7446 2.1366 4.1063 38 1 3.4686 3.2473 6.3297 39 1 3.1065 4.3460 4.9771 40 1 1.7785 3.6166 5.9112 41 1 2.7929 0.9788 2.4352 42 1 1.0488 0.6768 2.7041 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695569703.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:44 Heat of formation + Delta-G solvation = -19.994025 kcal Electronic energy + Delta-G solvation = -18030.455128 eV Core-core repulsion = 15430.199959 eV Total energy + Delta-G solvation = -2600.255170 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.68917 -38.26627 -35.27858 -33.69237 -32.32713 -30.42525 -30.03811 -28.11018 -26.08822 -24.58709 -23.76375 -22.10702 -21.11549 -20.13073 -18.58571 -17.57754 -17.11213 -16.51365 -16.31980 -15.73218 -15.32843 -14.96482 -14.51640 -14.29024 -14.17269 -13.96514 -13.90987 -13.28600 -13.09898 -12.89245 -12.78536 -12.62706 -12.48441 -12.34591 -12.24497 -12.02462 -11.88366 -11.77108 -11.64657 -11.46887 -11.25278 -11.16760 -10.52397 -9.28993 -9.11712 -8.19433 -6.30821 1.39694 1.42901 1.50773 2.40061 2.81056 3.13822 3.32508 3.60778 3.76205 4.05684 4.21914 4.25071 4.29526 4.30399 4.39056 4.45060 4.53759 4.60189 4.64065 4.64596 4.68292 4.86943 4.92909 4.95118 5.00196 5.03647 5.11805 5.14129 5.18172 5.27743 5.33519 5.33855 5.48747 5.67094 5.80494 5.95108 6.09780 6.17357 6.35092 6.38640 6.86401 7.38213 8.92516 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.035318 B = 0.004903 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.615807 B = 5709.068364 C = 6089.330079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.049 3.951 3 N -0.540 5.540 4 C 0.079 3.921 5 C 0.041 3.959 6 C -0.545 4.545 7 H 0.059 0.941 8 C 0.003 3.997 9 N -0.932 5.932 10 Si 0.965 3.035 11 H -0.267 1.267 12 H -0.283 1.283 13 H -0.267 1.267 14 C 0.073 3.927 15 H 0.054 0.946 16 C -0.134 4.134 17 C 0.047 3.953 18 N -0.534 5.534 19 C 0.042 3.958 20 C -0.147 4.147 21 C 0.059 3.941 22 H 0.040 0.960 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.053 0.947 26 H 0.086 0.914 27 H 0.025 0.975 28 H 0.059 0.941 29 H -0.011 1.011 30 H -0.009 1.009 31 H 0.263 0.737 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.027 0.973 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.047 0.953 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.030 2.994 17.888 18.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.079 4.079 3 N -0.263 5.263 4 C -0.048 4.048 5 C 0.004 3.996 6 C -0.583 4.583 7 H 0.077 0.923 8 C -0.195 4.195 9 N -0.572 5.572 10 Si 0.789 3.211 11 H -0.191 1.191 12 H -0.208 1.208 13 H -0.192 1.192 14 C -0.036 4.036 15 H 0.072 0.928 16 C -0.173 4.173 17 C -0.081 4.081 18 N -0.259 5.259 19 C -0.086 4.086 20 C -0.205 4.205 21 C -0.069 4.069 22 H 0.059 0.941 23 H 0.093 0.907 24 H 0.085 0.915 25 H 0.071 0.929 26 H 0.104 0.896 27 H 0.043 0.957 28 H 0.077 0.923 29 H 0.008 0.992 30 H 0.009 0.991 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.045 0.955 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.874 2.905 18.102 18.970 hybrid contribution 0.138 0.124 -1.711 1.721 sum -4.736 3.029 16.390 17.328 Atomic orbital electron populations 1.22318 0.97139 1.02958 1.01482 1.22150 0.93855 0.89816 1.02093 1.62300 1.59058 1.02591 1.02391 1.21963 0.96906 0.97531 0.88423 1.18856 0.94033 0.94664 0.92071 1.21601 1.23742 1.16769 0.96213 0.92298 1.25945 0.94668 0.96149 1.02771 1.70105 1.27225 1.29970 1.29876 0.85511 0.78434 0.78950 0.78210 1.19142 1.20796 1.19158 1.22726 0.96754 0.93761 0.90317 0.92812 1.22795 1.00672 0.96588 0.97267 1.22837 1.01611 0.92359 0.91268 1.63738 1.48750 1.02075 1.11362 1.22329 0.92740 1.00246 0.93242 1.21851 1.02700 0.97082 0.98832 1.22948 1.00740 0.94149 0.89055 0.94129 0.90742 0.91490 0.92868 0.89578 0.95658 0.92251 0.99218 0.99114 0.92786 0.91058 0.92198 0.89788 0.91323 0.90179 0.95462 0.90860 0.92537 0.91859 0.93460 0.89704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.12 9.27 71.98 0.67 -4.46 16 2 C 0.05 1.61 5.61 86.30 0.48 2.09 16 3 N -0.54 -19.64 4.57 -862.87 -3.94 -23.58 16 4 C 0.08 3.42 4.71 86.30 0.41 3.83 16 5 C 0.04 2.25 4.92 29.85 0.15 2.40 16 6 C -0.54 -31.60 9.11 25.60 0.23 -31.37 16 7 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 8 C 0.00 0.15 5.46 84.66 0.46 0.62 16 9 N -0.93 -57.67 13.29 21.45 0.28 -57.38 16 10 Si 0.96 44.70 29.54 68.60 2.03 46.73 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 14 C 0.07 2.17 1.91 46.30 0.09 2.26 16 15 H 0.05 1.61 6.74 -2.39 -0.02 1.59 16 16 C -0.13 -3.78 5.61 31.78 0.18 -3.60 16 17 C 0.05 1.06 6.18 86.65 0.54 1.60 16 18 N -0.53 -12.26 5.28 -885.51 -4.67 -16.93 16 19 C 0.04 0.81 5.57 86.30 0.48 1.29 16 20 C -0.15 -2.25 9.61 71.98 0.69 -1.56 16 21 C 0.06 1.50 4.88 86.77 0.42 1.92 16 22 H 0.04 1.31 6.51 -2.39 -0.02 1.29 16 23 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.07 1.71 6.07 -2.38 -0.01 1.70 16 25 H 0.05 2.07 6.53 -2.39 -0.02 2.06 16 26 H 0.09 2.45 7.17 -2.38 -0.02 2.43 16 27 H 0.03 1.08 6.18 -2.39 -0.01 1.07 16 28 H 0.06 2.54 6.84 -2.38 -0.02 2.53 16 29 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 30 H -0.01 -0.55 6.83 -2.39 -0.02 -0.57 16 31 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 32 H 0.07 1.98 7.81 -2.39 -0.02 1.96 16 33 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.07 1.41 5.95 -2.39 -0.01 1.40 16 36 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 37 H 0.03 0.57 7.97 -2.39 -0.02 0.55 16 38 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.06 0.87 6.29 -2.39 -0.02 0.85 16 40 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.05 1.30 7.67 -2.38 -0.02 1.28 16 42 H 0.08 1.99 7.83 -2.39 -0.02 1.97 16 Total: -1.00 -64.09 316.22 -0.55 -64.63 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 0.96 Total: 11.51 kcal Atomic # 6 Polarization: -29.78 SS G_CDS: 4.80 Total: -24.98 kcal Atomic # 7 Polarization: -89.57 SS G_CDS: -8.33 Total: -97.89 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -64.09 -0.55 -64.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695569703.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.639 kcal (2) G-P(sol) polarization free energy of solvation -64.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds