Wall clock time and date at job start Mon Mar 30 2020 03:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46901 * 109.47143 * 2 1 4 4 C 1.46893 * 111.00431 * 76.10492 * 3 2 1 5 5 C 1.53000 * 109.47646 * 199.46922 * 4 3 2 6 6 C 1.50695 * 109.47349 * 174.91241 * 5 4 3 7 7 H 1.08000 * 120.00060 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99780 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00120 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99748 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47264 * 89.99705 * 10 8 6 12 12 H 1.48504 * 109.46995 * 329.99343 * 10 8 6 13 13 H 1.48503 * 109.46948 * 209.99863 * 10 8 6 14 14 C 1.46900 * 111.00234 * 200.06329 * 3 2 1 15 15 H 1.08993 * 110.28945 * 185.36838 * 14 3 2 16 16 C 1.54259 * 110.32253 * 307.50039 * 14 3 2 17 17 C 1.54376 * 105.06716 * 118.89332 * 16 14 3 18 18 N 1.48566 * 104.59168 * 23.85036 * 17 16 14 19 19 C 1.46895 * 110.99865 * 200.95821 * 18 17 16 20 20 C 1.53001 * 109.47328 * 290.12648 * 19 18 17 21 21 C 1.48559 * 104.22204 * 320.52216 * 18 17 16 22 22 H 1.08998 * 109.46795 * 174.88493 * 1 2 3 23 23 H 1.08998 * 109.47056 * 294.88462 * 1 2 3 24 24 H 1.08999 * 109.47175 * 54.88232 * 1 2 3 25 25 H 1.09001 * 109.47339 * 239.99783 * 2 1 3 26 26 H 1.08995 * 109.47516 * 119.99877 * 2 1 3 27 27 H 1.08999 * 109.46875 * 79.46371 * 4 3 2 28 28 H 1.09006 * 109.46957 * 319.46853 * 4 3 2 29 29 H 1.08998 * 109.46647 * 54.90639 * 5 4 3 30 30 H 1.08998 * 109.46651 * 294.91316 * 5 4 3 31 31 H 0.96998 * 120.00100 * 0.02562 * 9 8 6 32 32 H 1.09004 * 110.32106 * 237.79374 * 16 14 3 33 33 H 1.09006 * 110.32184 * 359.97438 * 16 14 3 34 34 H 1.08995 * 110.41493 * 142.62590 * 17 16 14 35 35 H 1.08997 * 110.41607 * 264.95730 * 17 16 14 36 36 H 1.09002 * 109.47286 * 50.13111 * 19 18 17 37 37 H 1.09004 * 109.46834 * 170.12599 * 19 18 17 38 38 H 1.08996 * 109.47102 * 300.00052 * 20 19 18 39 39 H 1.08992 * 109.46814 * 60.00182 * 20 19 18 40 40 H 1.09005 * 109.46667 * 180.02562 * 20 19 18 41 41 H 1.09004 * 110.40514 * 280.69795 * 21 18 17 42 42 H 1.09004 * 110.41319 * 158.26294 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8847 1.9912 1.3312 5 6 1.9314 3.5152 1.2048 6 6 1.6683 4.1392 2.5511 7 1 1.4856 3.5116 3.4108 8 6 1.6598 5.5115 2.6850 9 7 1.8818 6.2757 1.6380 10 14 1.3344 6.2850 4.3539 11 1 2.6206 6.4714 5.0724 12 1 0.4485 5.3956 5.1474 13 1 0.6753 7.6027 4.1687 14 6 3.4097 1.4520 -0.4705 15 1 3.7919 2.4684 -0.3765 16 6 4.2933 0.4713 0.3277 17 6 4.8466 -0.5159 -0.7223 18 7 4.7871 0.2303 -2.0056 19 6 4.8005 -0.6897 -3.1507 20 6 6.1811 -1.3388 -3.2673 21 6 3.5034 0.9748 -1.9357 22 1 -0.3633 -1.0236 -0.0916 23 1 -0.3633 0.4324 0.9322 24 1 -0.3633 0.5912 -0.8406 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 2.7023 1.6542 1.9684 28 1 0.9336 1.6921 1.7719 29 1 1.1709 3.8445 0.4968 30 1 2.9155 3.8202 0.8490 31 1 2.0511 5.8741 0.7715 32 1 5.1103 1.0061 0.8120 33 1 3.6956 -0.0595 1.0688 34 1 5.8762 -0.7845 -0.4862 35 1 4.2231 -1.4087 -0.7705 36 1 4.0465 -1.4632 -3.0042 37 1 4.5808 -0.1365 -4.0638 38 1 6.9350 -0.5654 -3.4138 39 1 6.4007 -1.8920 -2.3542 40 1 6.1911 -2.0212 -4.1173 41 1 2.6686 0.3162 -2.1753 42 1 3.5217 1.8286 -2.6131 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695569704.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:46 Heat of formation + Delta-G solvation = -2.967000 kcal Electronic energy + Delta-G solvation = -18153.944348 eV Core-core repulsion = 15554.427526 eV Total energy + Delta-G solvation = -2599.516822 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.74344 -36.70325 -33.52617 -32.62401 -30.77539 -29.15772 -28.97761 -26.56991 -23.97947 -23.06516 -22.13732 -21.35471 -20.63791 -18.70121 -16.72454 -16.23671 -16.07557 -15.06219 -14.75793 -14.37784 -13.80454 -13.68321 -13.49322 -13.08722 -12.88443 -12.56464 -12.35467 -12.00870 -11.75387 -11.67542 -11.46669 -11.35282 -11.21292 -11.08614 -10.94983 -10.78359 -10.52828 -10.34684 -10.10900 -9.89282 -9.64371 -8.51314 -8.49495 -8.25745 -7.77278 -6.30739 -3.99219 3.46075 3.49999 3.65609 3.87609 4.40048 4.60969 4.72322 4.80908 4.99837 5.11952 5.19951 5.26698 5.34126 5.40028 5.47519 5.50446 5.55795 5.59565 5.68640 5.76322 5.81953 5.93365 5.93683 6.01407 6.08903 6.11399 6.16943 6.23434 6.40396 6.44811 6.48936 6.77583 6.90921 7.01772 7.35392 7.45774 7.72872 7.79125 8.29692 8.52623 8.94721 9.73180 11.10541 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.032344 B = 0.005201 C = 0.004839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.481726 B = 5382.081136 C = 5784.936888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.046 3.954 3 N -0.531 5.531 4 C 0.069 3.931 5 C 0.019 3.981 6 C -0.603 4.603 7 H 0.046 0.954 8 C 0.016 3.984 9 N -0.913 5.913 10 Si 1.070 2.930 11 H -0.289 1.289 12 H -0.289 1.289 13 H -0.284 1.284 14 C 0.084 3.916 15 H 0.098 0.902 16 C -0.157 4.157 17 C 0.037 3.963 18 N -0.512 5.512 19 C 0.040 3.960 20 C -0.146 4.146 21 C 0.039 3.961 22 H 0.049 0.951 23 H 0.056 0.944 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.029 0.971 27 H 0.024 0.976 28 H 0.063 0.937 29 H 0.016 0.984 30 H 0.005 0.995 31 H 0.270 0.730 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.038 0.962 36 H 0.032 0.968 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.052 0.948 40 H 0.056 0.944 41 H 0.052 0.948 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.135 -15.848 -7.241 17.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.082 4.082 3 N -0.255 5.255 4 C -0.057 4.057 5 C -0.019 4.019 6 C -0.642 4.642 7 H 0.064 0.936 8 C -0.188 4.188 9 N -0.550 5.550 10 Si 0.899 3.101 11 H -0.215 1.215 12 H -0.216 1.216 13 H -0.210 1.210 14 C -0.026 4.026 15 H 0.116 0.884 16 C -0.197 4.197 17 C -0.091 4.091 18 N -0.237 5.237 19 C -0.088 4.088 20 C -0.204 4.204 21 C -0.089 4.089 22 H 0.068 0.932 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.047 0.953 27 H 0.043 0.957 28 H 0.081 0.919 29 H 0.034 0.966 30 H 0.023 0.977 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.057 0.943 36 H 0.050 0.950 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.145 -13.776 -6.862 15.939 hybrid contribution -0.015 -2.582 -0.111 2.585 sum 4.130 -16.359 -6.974 18.256 Atomic orbital electron populations 1.21754 0.95164 1.00472 1.02869 1.22090 0.95981 0.90446 0.99651 1.62308 1.18418 1.16252 1.28483 1.22218 0.99405 0.98049 0.86062 1.19165 0.96271 0.89109 0.97343 1.22037 1.53371 0.94053 0.94724 0.93551 1.25793 0.94279 0.94179 1.04527 1.70727 1.44717 1.38577 1.00933 0.83529 0.76557 0.75736 0.74264 1.21541 1.21569 1.21000 1.22445 0.87648 0.99966 0.92529 0.88425 1.22997 1.00514 0.98047 0.98141 1.23053 1.00692 0.95256 0.90059 1.65410 1.33349 1.23148 1.01751 1.22218 0.97244 0.94614 0.94751 1.21737 0.96973 1.00385 1.01255 1.23198 0.89921 0.98303 0.97453 0.93188 0.92454 0.91959 0.91876 0.95285 0.95729 0.91905 0.96616 0.97671 0.91933 0.90865 0.91154 0.90516 0.94342 0.95006 0.90787 0.91812 0.92897 0.92530 0.93039 0.89780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.96 37.16 0.37 -1.67 16 2 C 0.05 0.69 4.54 -3.82 -0.02 0.67 16 3 N -0.53 -9.51 4.36 -225.00 -0.98 -10.49 16 4 C 0.07 1.47 4.56 -3.83 -0.02 1.46 16 5 C 0.02 0.49 4.32 -27.89 -0.12 0.36 16 6 C -0.60 -17.46 9.11 -34.44 -0.31 -17.77 16 7 H 0.05 1.32 7.74 -52.49 -0.41 0.91 16 8 C 0.02 0.47 5.46 -17.82 -0.10 0.38 16 9 N -0.91 -28.49 13.65 55.43 0.76 -27.73 16 10 Si 1.07 25.73 29.90 -169.99 -5.08 20.65 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 C 0.08 1.39 3.02 -66.33 -0.20 1.19 16 15 H 0.10 1.89 6.78 -51.93 -0.35 1.53 16 16 C -0.16 -2.32 5.42 -25.35 -0.14 -2.46 16 17 C 0.04 0.47 5.73 -2.18 -0.01 0.46 16 18 N -0.51 -6.70 5.37 -229.97 -1.24 -7.94 16 19 C 0.04 0.43 5.53 -3.83 -0.02 0.41 16 20 C -0.15 -1.33 9.97 37.16 0.37 -0.96 16 21 C 0.04 0.56 5.86 -2.18 -0.01 0.55 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.06 0.87 6.91 -51.93 -0.36 0.51 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.06 0.87 5.81 -51.93 -0.30 0.56 16 26 H 0.03 0.43 6.66 -51.93 -0.35 0.08 16 27 H 0.02 0.52 6.93 -51.93 -0.36 0.16 16 28 H 0.06 1.35 6.59 -51.93 -0.34 1.00 16 29 H 0.02 0.44 8.01 -51.93 -0.42 0.02 16 30 H 0.01 0.14 6.84 -51.93 -0.36 -0.22 16 31 H 0.27 8.44 7.22 -40.82 -0.29 8.15 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.07 1.05 5.62 -51.93 -0.29 0.76 16 34 H 0.08 0.90 7.76 -51.93 -0.40 0.49 16 35 H 0.04 0.46 7.83 -51.93 -0.41 0.05 16 36 H 0.03 0.33 7.88 -51.93 -0.41 -0.08 16 37 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.05 0.48 7.25 -51.93 -0.38 0.10 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.05 0.72 5.85 -51.93 -0.30 0.42 16 42 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 316.76 15.07 4.77 4.77 Total: -1.00 -30.38 316.76 -9.46 -39.84 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -7.48 Total: -1.73 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: -0.21 Total: -17.38 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: -1.46 Total: -46.16 kcal Atomic # 14 Polarization: 25.73 SS G_CDS: -5.08 Total: 20.65 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.38 -9.46 -39.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695569704.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.872 kcal (2) G-P(sol) polarization free energy of solvation -30.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds