Wall clock time and date at job start Mon Mar 30 2020 03:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46901 * 109.47143 * 2 1 4 4 C 1.46893 * 111.00431 * 76.10492 * 3 2 1 5 5 C 1.53000 * 109.47646 * 199.46922 * 4 3 2 6 6 C 1.50695 * 109.47349 * 174.91241 * 5 4 3 7 7 H 1.08000 * 120.00060 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99780 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00120 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99748 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47264 * 89.99705 * 10 8 6 12 12 H 1.48504 * 109.46995 * 329.99343 * 10 8 6 13 13 H 1.48503 * 109.46948 * 209.99863 * 10 8 6 14 14 C 1.46900 * 111.00234 * 200.06329 * 3 2 1 15 15 H 1.08993 * 110.28945 * 185.36838 * 14 3 2 16 16 C 1.54259 * 110.32253 * 307.50039 * 14 3 2 17 17 C 1.54376 * 105.06716 * 118.89332 * 16 14 3 18 18 N 1.48566 * 104.59168 * 23.85036 * 17 16 14 19 19 C 1.46895 * 110.99865 * 200.95821 * 18 17 16 20 20 C 1.53001 * 109.47328 * 290.12648 * 19 18 17 21 21 C 1.48559 * 104.22204 * 320.52216 * 18 17 16 22 22 H 1.08998 * 109.46795 * 174.88493 * 1 2 3 23 23 H 1.08998 * 109.47056 * 294.88462 * 1 2 3 24 24 H 1.08999 * 109.47175 * 54.88232 * 1 2 3 25 25 H 1.09001 * 109.47339 * 239.99783 * 2 1 3 26 26 H 1.08995 * 109.47516 * 119.99877 * 2 1 3 27 27 H 1.08999 * 109.46875 * 79.46371 * 4 3 2 28 28 H 1.09006 * 109.46957 * 319.46853 * 4 3 2 29 29 H 1.08998 * 109.46647 * 54.90639 * 5 4 3 30 30 H 1.08998 * 109.46651 * 294.91316 * 5 4 3 31 31 H 0.96998 * 120.00100 * 0.02562 * 9 8 6 32 32 H 1.09004 * 110.32106 * 237.79374 * 16 14 3 33 33 H 1.09006 * 110.32184 * 359.97438 * 16 14 3 34 34 H 1.08995 * 110.41493 * 142.62590 * 17 16 14 35 35 H 1.08997 * 110.41607 * 264.95730 * 17 16 14 36 36 H 1.09002 * 109.47286 * 50.13111 * 19 18 17 37 37 H 1.09004 * 109.46834 * 170.12599 * 19 18 17 38 38 H 1.08996 * 109.47102 * 300.00052 * 20 19 18 39 39 H 1.08992 * 109.46814 * 60.00182 * 20 19 18 40 40 H 1.09005 * 109.46667 * 180.02562 * 20 19 18 41 41 H 1.09004 * 110.40514 * 280.69795 * 21 18 17 42 42 H 1.09004 * 110.41319 * 158.26294 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8847 1.9912 1.3312 5 6 1.9314 3.5152 1.2048 6 6 1.6683 4.1392 2.5511 7 1 1.4856 3.5116 3.4108 8 6 1.6598 5.5115 2.6850 9 7 1.8818 6.2757 1.6380 10 14 1.3344 6.2850 4.3539 11 1 2.6206 6.4714 5.0724 12 1 0.4485 5.3956 5.1474 13 1 0.6753 7.6027 4.1687 14 6 3.4097 1.4520 -0.4705 15 1 3.7919 2.4684 -0.3765 16 6 4.2933 0.4713 0.3277 17 6 4.8466 -0.5159 -0.7223 18 7 4.7871 0.2303 -2.0056 19 6 4.8005 -0.6897 -3.1507 20 6 6.1811 -1.3388 -3.2673 21 6 3.5034 0.9748 -1.9357 22 1 -0.3633 -1.0236 -0.0916 23 1 -0.3633 0.4324 0.9322 24 1 -0.3633 0.5912 -0.8406 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 2.7023 1.6542 1.9684 28 1 0.9336 1.6921 1.7719 29 1 1.1709 3.8445 0.4968 30 1 2.9155 3.8202 0.8490 31 1 2.0511 5.8741 0.7715 32 1 5.1103 1.0061 0.8120 33 1 3.6956 -0.0595 1.0688 34 1 5.8762 -0.7845 -0.4862 35 1 4.2231 -1.4087 -0.7705 36 1 4.0465 -1.4632 -3.0042 37 1 4.5808 -0.1365 -4.0638 38 1 6.9350 -0.5654 -3.4138 39 1 6.4007 -1.8920 -2.3542 40 1 6.1911 -2.0212 -4.1173 41 1 2.6686 0.3162 -2.1753 42 1 3.5217 1.8286 -2.6131 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695569704.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:46 Heat of formation + Delta-G solvation = -23.446586 kcal Electronic energy + Delta-G solvation = -18154.832409 eV Core-core repulsion = 15554.427526 eV Total energy + Delta-G solvation = -2600.404884 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.97689 -37.99190 -35.62669 -33.69017 -32.40162 -30.44152 -30.22324 -27.99740 -25.90916 -24.04602 -23.52407 -23.08107 -21.67236 -20.09777 -18.91105 -17.46194 -17.24995 -16.42740 -15.77346 -15.69725 -15.55664 -15.12309 -14.85183 -14.79334 -13.99997 -13.95438 -13.59657 -13.46230 -13.29541 -12.81153 -12.70329 -12.60815 -12.48214 -12.35147 -12.31209 -12.02853 -11.98637 -11.87075 -11.70970 -11.56229 -11.38746 -10.69932 -10.52864 -9.49477 -9.21468 -8.69193 -6.39151 1.51894 1.61801 1.79363 2.55405 2.74647 3.16932 3.19488 3.56026 3.70675 3.94239 4.04057 4.13513 4.19525 4.25804 4.32945 4.40354 4.45806 4.47800 4.57849 4.61091 4.66824 4.76466 4.86012 4.90720 4.94319 4.94390 4.96235 5.01021 5.07624 5.13783 5.28826 5.32884 5.34011 5.42366 5.73065 5.93225 6.05894 6.17920 6.22835 6.27164 6.57918 7.43916 8.71880 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.032344 B = 0.005201 C = 0.004839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.481726 B = 5382.081136 C = 5784.936888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.048 3.952 3 N -0.541 5.541 4 C 0.088 3.912 5 C 0.026 3.974 6 C -0.620 4.620 7 H 0.050 0.950 8 C -0.038 4.038 9 N -0.937 5.937 10 Si 1.121 2.879 11 H -0.272 1.272 12 H -0.268 1.268 13 H -0.282 1.282 14 C 0.079 3.921 15 H 0.058 0.942 16 C -0.153 4.153 17 C 0.046 3.954 18 N -0.524 5.524 19 C 0.038 3.962 20 C -0.141 4.141 21 C 0.050 3.950 22 H 0.081 0.919 23 H 0.040 0.960 24 H 0.053 0.947 25 H 0.082 0.918 26 H 0.036 0.964 27 H 0.023 0.977 28 H 0.063 0.937 29 H -0.012 1.012 30 H -0.018 1.018 31 H 0.254 0.746 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.054 0.946 36 H 0.041 0.959 37 H 0.076 0.924 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.156 -18.019 -6.914 19.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.079 4.079 3 N -0.265 5.265 4 C -0.039 4.039 5 C -0.012 4.012 6 C -0.658 4.658 7 H 0.069 0.931 8 C -0.235 4.235 9 N -0.574 5.574 10 Si 0.942 3.058 11 H -0.198 1.198 12 H -0.192 1.192 13 H -0.208 1.208 14 C -0.030 4.030 15 H 0.076 0.924 16 C -0.192 4.192 17 C -0.081 4.081 18 N -0.249 5.249 19 C -0.090 4.090 20 C -0.199 4.199 21 C -0.078 4.078 22 H 0.100 0.900 23 H 0.059 0.941 24 H 0.072 0.928 25 H 0.100 0.900 26 H 0.054 0.946 27 H 0.041 0.959 28 H 0.081 0.919 29 H 0.006 0.994 30 H 0.001 0.999 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.095 0.905 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.094 0.906 41 H 0.079 0.921 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.176 -15.986 -6.559 17.777 hybrid contribution -0.004 -1.931 -0.282 1.951 sum 4.172 -17.917 -6.841 19.627 Atomic orbital electron populations 1.21748 0.94450 1.02174 1.01581 1.22175 0.96489 0.88380 1.00834 1.62197 1.19541 1.18598 1.26191 1.21808 0.99275 0.94774 0.88075 1.19016 0.93852 0.92754 0.95532 1.22469 1.52865 0.94663 0.95810 0.93130 1.27462 0.93194 0.95364 1.07497 1.70873 1.46750 1.38841 1.00971 0.82898 0.77562 0.75259 0.70081 1.19774 1.19234 1.20756 1.22374 0.87279 0.98596 0.94768 0.92391 1.22918 0.99745 0.97988 0.98589 1.23015 1.01566 0.94760 0.88802 1.65412 1.32333 1.24270 1.02889 1.22318 0.98530 0.94421 0.93716 1.21709 0.95622 1.00350 1.02200 1.23023 0.91133 0.98425 0.95237 0.90023 0.94097 0.92829 0.89960 0.94594 0.95863 0.91904 0.99383 0.99939 0.93637 0.92037 0.91046 0.89288 0.92808 0.94054 0.90538 0.92632 0.92697 0.90634 0.92081 0.90685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 9.96 71.98 0.72 -3.02 16 2 C 0.05 1.35 4.54 86.30 0.39 1.74 16 3 N -0.54 -19.49 4.36 -865.78 -3.78 -23.27 16 4 C 0.09 3.83 4.56 86.30 0.39 4.22 16 5 C 0.03 1.42 4.32 29.85 0.13 1.55 16 6 C -0.62 -36.59 9.11 25.60 0.23 -36.36 16 7 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 8 C -0.04 -2.26 5.46 84.66 0.46 -1.80 16 9 N -0.94 -60.11 13.65 21.45 0.29 -59.81 16 10 Si 1.12 51.41 29.90 68.60 2.05 53.46 16 11 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 12 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 13 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 14 C 0.08 2.69 3.02 45.81 0.14 2.83 16 15 H 0.06 2.40 6.78 -2.39 -0.02 2.38 16 16 C -0.15 -4.41 5.42 31.49 0.17 -4.24 16 17 C 0.05 1.06 5.73 86.45 0.50 1.56 16 18 N -0.52 -12.89 5.37 -881.49 -4.73 -17.62 16 19 C 0.04 0.72 5.53 86.30 0.48 1.19 16 20 C -0.14 -2.21 9.97 71.98 0.72 -1.49 16 21 C 0.05 1.40 5.86 86.45 0.51 1.91 16 22 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.04 1.20 6.91 -2.39 -0.02 1.18 16 24 H 0.05 1.49 8.14 -2.39 -0.02 1.48 16 25 H 0.08 2.01 5.81 -2.39 -0.01 2.00 16 26 H 0.04 0.98 6.66 -2.39 -0.02 0.96 16 27 H 0.02 1.00 6.93 -2.39 -0.02 0.99 16 28 H 0.06 2.71 6.59 -2.38 -0.02 2.69 16 29 H -0.01 -0.73 8.01 -2.39 -0.02 -0.75 16 30 H -0.02 -1.04 6.84 -2.39 -0.02 -1.05 16 31 H 0.25 16.69 7.22 -92.71 -0.67 16.02 16 32 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.07 2.04 5.62 -2.38 -0.01 2.02 16 34 H 0.09 1.85 7.76 -2.39 -0.02 1.83 16 35 H 0.05 1.09 7.83 -2.39 -0.02 1.07 16 36 H 0.04 0.72 7.88 -2.39 -0.02 0.70 16 37 H 0.08 1.41 8.13 -2.38 -0.02 1.39 16 38 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.05 0.84 7.25 -2.39 -0.02 0.82 16 40 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 41 H 0.06 1.59 5.85 -2.39 -0.01 1.57 16 42 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -66.81 316.76 -0.27 -67.08 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 1.06 Total: 12.06 kcal Atomic # 6 Polarization: -36.73 SS G_CDS: 4.83 Total: -31.90 kcal Atomic # 7 Polarization: -92.49 SS G_CDS: -8.22 Total: -100.71 kcal Atomic # 14 Polarization: 51.41 SS G_CDS: 2.05 Total: 53.46 kcal Total: -66.81 -0.27 -67.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695569704.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.638 kcal (2) G-P(sol) polarization free energy of solvation -66.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds