Wall clock time and date at job start Mon Mar 30 2020 03:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46899 * 109.47221 * 2 1 4 4 C 1.46845 * 111.00071 * 169.99598 * 3 2 1 5 5 C 1.53042 * 109.52320 * 174.16311 * 4 3 2 6 6 C 1.53110 * 109.27826 * 59.18151 * 5 4 3 7 7 N 1.46906 * 109.52378 * 182.37750 * 6 5 4 8 8 C 1.46903 * 110.99762 * 273.91414 * 7 6 5 9 9 H 1.08997 * 109.46899 * 35.81321 * 8 7 6 10 10 C 1.52996 * 109.47447 * 275.80898 * 8 7 6 11 11 C 1.52998 * 109.46617 * 155.80496 * 8 7 6 12 12 C 1.50695 * 109.47740 * 295.00297 * 11 8 7 13 13 H 1.08001 * 119.99946 * 359.97438 * 12 11 8 14 14 C 1.37879 * 120.00475 * 180.02562 * 12 11 8 15 15 N 1.31516 * 119.99595 * 0.02562 * 14 12 11 16 16 Si 1.86787 * 120.00157 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.47405 * 89.99883 * 16 14 12 18 18 H 1.48504 * 109.47080 * 209.99704 * 16 14 12 19 19 H 1.48498 * 109.47366 * 329.99827 * 16 14 12 20 20 C 1.53117 * 109.16297 * 302.34556 * 6 5 4 21 21 C 1.46852 * 110.99801 * 45.79157 * 3 2 1 22 22 H 1.09000 * 109.47149 * 300.00061 * 1 2 3 23 23 H 1.09003 * 109.47370 * 59.99868 * 1 2 3 24 24 H 1.09008 * 109.47158 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47149 * 239.99939 * 2 1 3 26 26 H 1.09003 * 109.47370 * 120.00132 * 2 1 3 27 27 H 1.09006 * 109.46186 * 54.14984 * 4 3 2 28 28 H 1.08999 * 109.45602 * 294.17358 * 4 3 2 29 29 H 1.08998 * 109.50345 * 299.24072 * 5 4 3 30 30 H 1.08998 * 109.49926 * 179.12605 * 5 4 3 31 31 H 1.09007 * 109.52413 * 62.24882 * 6 5 4 32 32 H 1.00896 * 110.99655 * 149.96289 * 7 6 5 33 33 H 1.09000 * 109.47198 * 65.05254 * 10 8 7 34 34 H 1.08993 * 109.47418 * 185.05930 * 10 8 7 35 35 H 1.09001 * 109.47038 * 305.06164 * 10 8 7 36 36 H 1.09007 * 109.47156 * 55.00661 * 11 8 7 37 37 H 1.09003 * 109.46649 * 174.99718 * 11 8 7 38 38 H 0.96993 * 119.99854 * 180.02562 * 15 14 12 39 39 H 1.08998 * 109.50832 * 177.59308 * 20 6 5 40 40 H 1.08995 * 109.50551 * 297.71273 * 20 6 5 41 41 H 1.09002 * 109.45809 * 305.85457 * 21 3 2 42 42 H 1.09003 * 109.46090 * 65.82995 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4679 1.4311 0.2382 5 6 3.9655 2.8705 0.0873 6 6 3.2354 3.7656 1.0923 7 7 3.6674 5.1583 0.9136 8 6 4.8859 5.4347 1.6862 9 1 5.5259 4.5524 1.6832 10 6 4.5080 5.7857 3.1266 11 6 5.6346 6.6099 1.0544 12 6 6.1139 6.2199 -0.3200 13 1 5.9057 5.2323 -0.7044 14 6 6.8190 7.1234 -1.0865 15 7 7.0739 8.3255 -0.6178 16 14 7.4136 6.6396 -2.7899 17 1 6.3724 6.9793 -3.7927 18 1 8.6638 7.3762 -3.1055 19 1 7.6774 5.1786 -2.8257 20 6 1.7264 3.6621 0.8541 21 6 1.2938 2.1998 0.9827 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.9755 0.7936 -0.4859 28 1 3.6815 1.0768 1.2466 29 1 3.7645 3.2208 -0.9251 30 1 5.0378 2.9068 0.2794 31 1 3.4673 3.4395 2.1062 32 1 2.9293 5.8003 1.1606 33 1 4.0548 4.9176 3.6052 34 1 5.4028 6.0779 3.6761 35 1 3.7969 6.6119 3.1246 36 1 4.9658 7.4671 0.9763 37 1 6.4902 6.8723 1.6767 38 1 7.5696 8.9612 -1.1571 39 1 1.1990 4.2640 1.5941 40 1 1.4902 4.0248 -0.1462 41 1 0.2222 2.1205 0.7995 42 1 1.5179 1.8419 1.9877 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695792418.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:36 Heat of formation + Delta-G solvation = -11.580937 kcal Electronic energy + Delta-G solvation = -18073.192694 eV Core-core repulsion = 15473.302343 eV Total energy + Delta-G solvation = -2599.890351 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.24406 -36.67036 -33.78458 -32.24795 -31.00050 -29.94723 -27.76545 -27.13932 -24.01411 -22.94434 -22.68727 -21.03578 -19.58051 -19.30054 -16.34108 -16.05304 -15.15847 -15.08511 -14.66345 -14.43681 -14.04331 -13.68041 -13.58193 -12.86036 -12.71943 -12.44273 -12.27808 -11.83144 -11.76905 -11.64375 -11.41550 -11.22098 -11.11676 -10.98255 -10.76689 -10.50282 -10.49085 -10.23447 -10.06729 -9.80253 -9.16367 -8.91044 -8.27870 -8.18760 -7.47848 -5.81420 -3.78341 3.44542 3.50037 3.53935 3.89926 4.62640 4.70730 4.84148 4.99413 5.01468 5.15501 5.31205 5.36199 5.44545 5.53069 5.56146 5.62975 5.66393 5.78350 5.83749 5.86146 5.87149 5.94072 5.95947 6.00780 6.13727 6.23475 6.32658 6.42223 6.59396 6.67938 6.81828 7.09907 7.14847 7.16022 7.65638 7.77476 8.11326 8.14774 8.26892 8.67942 9.27197 9.82668 11.30948 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026695 B = 0.005808 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.646754 B = 4820.169087 C = 5546.267233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.050 3.950 3 N -0.537 5.537 4 C 0.058 3.942 5 C -0.103 4.103 6 C 0.090 3.910 7 N -0.659 5.659 8 C 0.089 3.911 9 H 0.063 0.937 10 C -0.179 4.179 11 C 0.033 3.967 12 C -0.484 4.484 13 H 0.059 0.941 14 C 0.049 3.951 15 N -0.906 5.906 16 Si 0.889 3.111 17 H -0.283 1.283 18 H -0.291 1.291 19 H -0.276 1.276 20 C -0.119 4.119 21 C 0.055 3.945 22 H 0.057 0.943 23 H 0.064 0.936 24 H 0.057 0.943 25 H 0.074 0.926 26 H 0.028 0.972 27 H 0.072 0.928 28 H 0.027 0.973 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.029 0.971 32 H 0.330 0.670 33 H 0.035 0.965 34 H 0.056 0.944 35 H 0.049 0.951 36 H 0.016 0.984 37 H 0.015 0.985 38 H 0.256 0.744 39 H 0.060 0.940 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.828 -14.214 4.669 19.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.078 4.078 3 N -0.262 5.262 4 C -0.070 4.070 5 C -0.141 4.141 6 C -0.021 4.021 7 N -0.289 5.289 8 C -0.020 4.020 9 H 0.081 0.919 10 C -0.239 4.239 11 C -0.004 4.004 12 C -0.523 4.523 13 H 0.078 0.922 14 C -0.150 4.150 15 N -0.547 5.547 16 Si 0.718 3.282 17 H -0.209 1.209 18 H -0.217 1.217 19 H -0.201 1.201 20 C -0.157 4.157 21 C -0.073 4.073 22 H 0.076 0.924 23 H 0.083 0.917 24 H 0.076 0.924 25 H 0.092 0.908 26 H 0.047 0.953 27 H 0.091 0.909 28 H 0.045 0.955 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.047 0.953 32 H 0.149 0.851 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -11.476 -13.984 3.572 18.440 hybrid contribution 0.198 -0.469 0.797 0.946 sum -11.278 -14.454 4.369 18.847 Atomic orbital electron populations 1.21945 0.95251 1.01604 1.02549 1.22065 0.95570 0.89606 1.00510 1.62019 1.04347 1.09890 1.49991 1.22143 0.87325 0.98639 0.98940 1.21578 0.99608 0.91687 1.01260 1.21483 0.93298 0.91026 0.96264 1.60559 1.06652 1.01378 1.60291 1.21814 0.91077 1.00773 0.88341 0.91886 1.22567 1.01408 0.99936 0.99940 1.19107 0.94058 0.91713 0.95539 1.21163 1.31831 0.99213 1.00068 0.92242 1.25004 0.96855 0.95180 0.97982 1.69968 1.41923 1.05546 1.37290 0.86643 0.77921 0.78320 0.85339 1.20921 1.21722 1.20099 1.21786 0.95789 0.95089 1.03021 1.22157 0.98647 0.93691 0.92813 0.92401 0.91682 0.92442 0.90807 0.95342 0.90934 0.95521 0.90185 0.91254 0.95350 0.85141 0.94622 0.92516 0.93171 0.96598 0.96643 0.93438 0.92129 0.90113 0.90306 0.95545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 9.16 37.16 0.34 -1.00 16 2 C 0.05 0.51 5.99 -3.83 -0.02 0.49 16 3 N -0.54 -6.77 4.81 -234.66 -1.13 -7.89 16 4 C 0.06 0.77 5.42 -3.83 -0.02 0.75 16 5 C -0.10 -1.66 5.59 -26.65 -0.15 -1.81 16 6 C 0.09 1.41 2.36 -67.59 -0.16 1.25 16 7 N -0.66 -12.38 5.78 -99.61 -0.58 -12.95 16 8 C 0.09 1.83 2.35 -67.71 -0.16 1.67 16 9 H 0.06 1.33 7.22 -51.93 -0.37 0.95 16 10 C -0.18 -3.08 9.16 37.16 0.34 -2.74 16 11 C 0.03 0.86 4.65 -27.89 -0.13 0.73 16 12 C -0.48 -13.78 8.84 -34.44 -0.30 -14.08 16 13 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 14 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 15 N -0.91 -27.85 13.29 55.43 0.74 -27.12 16 16 Si 0.89 22.49 29.54 -169.99 -5.02 17.47 16 17 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 18 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 20 C -0.12 -1.59 5.36 -26.65 -0.14 -1.73 16 21 C 0.06 0.65 4.85 -3.83 -0.02 0.64 16 22 H 0.06 0.48 6.21 -51.93 -0.32 0.16 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.03 0.28 8.08 -51.93 -0.42 -0.13 16 27 H 0.07 0.91 8.12 -51.93 -0.42 0.49 16 28 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 30 H 0.07 1.22 7.53 -51.93 -0.39 0.82 16 31 H 0.03 0.45 7.10 -51.93 -0.37 0.08 16 32 H 0.33 5.85 8.05 -39.29 -0.32 5.53 16 33 H 0.03 0.54 7.45 -51.93 -0.39 0.15 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.05 0.83 8.04 -51.93 -0.42 0.41 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.08 0.83 5.81 -51.93 -0.30 0.52 16 42 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 323.15 15.07 4.87 4.87 Total: -1.00 -30.28 323.15 -9.55 -39.84 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -7.91 Total: 0.30 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: -0.52 Total: -14.51 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: -0.97 Total: -47.96 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.28 -9.55 -39.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695792418.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.256 kcal (2) G-P(sol) polarization free energy of solvation -30.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds