Wall clock time and date at job start Mon Mar 30 2020 03:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46899 * 109.47221 * 2 1 4 4 C 1.46845 * 111.00071 * 169.99598 * 3 2 1 5 5 C 1.53042 * 109.52320 * 174.16311 * 4 3 2 6 6 C 1.53110 * 109.27826 * 59.18151 * 5 4 3 7 7 N 1.46906 * 109.52378 * 182.37750 * 6 5 4 8 8 C 1.46903 * 110.99762 * 273.91414 * 7 6 5 9 9 H 1.08997 * 109.46899 * 35.81321 * 8 7 6 10 10 C 1.52996 * 109.47447 * 275.80898 * 8 7 6 11 11 C 1.52998 * 109.46617 * 155.80496 * 8 7 6 12 12 C 1.50695 * 109.47740 * 295.00297 * 11 8 7 13 13 H 1.08001 * 119.99946 * 359.97438 * 12 11 8 14 14 C 1.37879 * 120.00475 * 180.02562 * 12 11 8 15 15 N 1.31516 * 119.99595 * 0.02562 * 14 12 11 16 16 Si 1.86787 * 120.00157 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.47405 * 89.99883 * 16 14 12 18 18 H 1.48504 * 109.47080 * 209.99704 * 16 14 12 19 19 H 1.48498 * 109.47366 * 329.99827 * 16 14 12 20 20 C 1.53117 * 109.16297 * 302.34556 * 6 5 4 21 21 C 1.46852 * 110.99801 * 45.79157 * 3 2 1 22 22 H 1.09000 * 109.47149 * 300.00061 * 1 2 3 23 23 H 1.09003 * 109.47370 * 59.99868 * 1 2 3 24 24 H 1.09008 * 109.47158 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47149 * 239.99939 * 2 1 3 26 26 H 1.09003 * 109.47370 * 120.00132 * 2 1 3 27 27 H 1.09006 * 109.46186 * 54.14984 * 4 3 2 28 28 H 1.08999 * 109.45602 * 294.17358 * 4 3 2 29 29 H 1.08998 * 109.50345 * 299.24072 * 5 4 3 30 30 H 1.08998 * 109.49926 * 179.12605 * 5 4 3 31 31 H 1.09007 * 109.52413 * 62.24882 * 6 5 4 32 32 H 1.00896 * 110.99655 * 149.96289 * 7 6 5 33 33 H 1.09000 * 109.47198 * 65.05254 * 10 8 7 34 34 H 1.08993 * 109.47418 * 185.05930 * 10 8 7 35 35 H 1.09001 * 109.47038 * 305.06164 * 10 8 7 36 36 H 1.09007 * 109.47156 * 55.00661 * 11 8 7 37 37 H 1.09003 * 109.46649 * 174.99718 * 11 8 7 38 38 H 0.96993 * 119.99854 * 180.02562 * 15 14 12 39 39 H 1.08998 * 109.50832 * 177.59308 * 20 6 5 40 40 H 1.08995 * 109.50551 * 297.71273 * 20 6 5 41 41 H 1.09002 * 109.45809 * 305.85457 * 21 3 2 42 42 H 1.09003 * 109.46090 * 65.82995 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4679 1.4311 0.2382 5 6 3.9655 2.8705 0.0873 6 6 3.2354 3.7656 1.0923 7 7 3.6674 5.1583 0.9136 8 6 4.8859 5.4347 1.6862 9 1 5.5259 4.5524 1.6832 10 6 4.5080 5.7857 3.1266 11 6 5.6346 6.6099 1.0544 12 6 6.1139 6.2199 -0.3200 13 1 5.9057 5.2323 -0.7044 14 6 6.8190 7.1234 -1.0865 15 7 7.0739 8.3255 -0.6178 16 14 7.4136 6.6396 -2.7899 17 1 6.3724 6.9793 -3.7927 18 1 8.6638 7.3762 -3.1055 19 1 7.6774 5.1786 -2.8257 20 6 1.7264 3.6621 0.8541 21 6 1.2938 2.1998 0.9827 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.9755 0.7936 -0.4859 28 1 3.6815 1.0768 1.2466 29 1 3.7645 3.2208 -0.9251 30 1 5.0378 2.9068 0.2794 31 1 3.4673 3.4395 2.1062 32 1 2.9293 5.8003 1.1606 33 1 4.0548 4.9176 3.6052 34 1 5.4028 6.0779 3.6761 35 1 3.7969 6.6119 3.1246 36 1 4.9658 7.4671 0.9763 37 1 6.4902 6.8723 1.6767 38 1 7.5696 8.9612 -1.1571 39 1 1.1990 4.2640 1.5941 40 1 1.4902 4.0248 -0.1462 41 1 0.2222 2.1205 0.7995 42 1 1.5179 1.8419 1.9877 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695792418.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:36 Heat of formation + Delta-G solvation = -31.808935 kcal Electronic energy + Delta-G solvation = -18074.069846 eV Core-core repulsion = 15473.302343 eV Total energy + Delta-G solvation = -2600.767503 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.35248 -38.07223 -35.31323 -34.10176 -32.12214 -31.13224 -29.35984 -28.68866 -25.32071 -24.61954 -23.88423 -22.06216 -21.15377 -20.53799 -18.37077 -17.28379 -16.54504 -16.41288 -16.06946 -15.63254 -15.50512 -14.97662 -14.65007 -14.36620 -13.97225 -13.91687 -13.58176 -13.32708 -13.20994 -13.05699 -12.63451 -12.57762 -12.41094 -12.36196 -12.16813 -12.06753 -11.88757 -11.80330 -11.53666 -11.09727 -11.06998 -10.97817 -10.46381 -9.21049 -8.96601 -8.07784 -6.11795 1.41593 1.43368 1.53470 2.48806 2.97610 3.23519 3.39143 3.85885 3.95339 4.17905 4.20126 4.25746 4.32523 4.38685 4.46193 4.52334 4.55285 4.59917 4.63200 4.68430 4.81369 4.86428 4.95381 4.99646 5.04295 5.13593 5.20397 5.21775 5.28047 5.32637 5.34734 5.51569 5.54363 5.72541 5.92601 6.17586 6.23324 6.38292 6.55712 6.79624 7.02316 7.53546 9.04633 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026695 B = 0.005808 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.646754 B = 4820.169087 C = 5546.267233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.049 3.951 3 N -0.552 5.552 4 C 0.066 3.934 5 C -0.100 4.100 6 C 0.093 3.907 7 N -0.677 5.677 8 C 0.101 3.899 9 H 0.054 0.946 10 C -0.169 4.169 11 C 0.038 3.962 12 C -0.494 4.494 13 H 0.056 0.944 14 C -0.007 4.007 15 N -0.942 5.942 16 Si 0.955 3.045 17 H -0.278 1.278 18 H -0.286 1.286 19 H -0.267 1.267 20 C -0.112 4.112 21 C 0.059 3.941 22 H 0.061 0.939 23 H 0.058 0.942 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.034 0.966 27 H 0.077 0.923 28 H 0.034 0.966 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.035 0.965 32 H 0.336 0.664 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.055 0.945 36 H -0.010 1.010 37 H -0.010 1.010 38 H 0.258 0.742 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.097 0.903 42 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.213 -16.061 4.863 21.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.078 4.078 3 N -0.278 5.278 4 C -0.062 4.062 5 C -0.139 4.139 6 C -0.016 4.016 7 N -0.308 5.308 8 C -0.009 4.009 9 H 0.072 0.928 10 C -0.228 4.228 11 C 0.001 3.999 12 C -0.533 4.533 13 H 0.075 0.925 14 C -0.202 4.202 15 N -0.585 5.585 16 Si 0.781 3.219 17 H -0.204 1.204 18 H -0.211 1.211 19 H -0.192 1.192 20 C -0.150 4.150 21 C -0.069 4.069 22 H 0.080 0.920 23 H 0.077 0.923 24 H 0.092 0.908 25 H 0.093 0.907 26 H 0.052 0.948 27 H 0.096 0.904 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.155 0.845 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.008 0.992 37 H 0.008 0.992 38 H 0.067 0.933 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.115 0.885 42 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -12.877 -15.852 3.771 20.769 hybrid contribution 0.623 0.106 0.732 0.967 sum -12.254 -15.747 4.503 20.455 Atomic orbital electron populations 1.21914 0.93855 1.02717 1.02411 1.22138 0.96710 0.88130 1.00864 1.61996 1.03715 1.11569 1.50523 1.21992 0.88254 0.96429 0.99532 1.21505 0.98579 0.93952 0.99869 1.21504 0.94980 0.88850 0.96300 1.60396 1.06391 1.03386 1.60613 1.21447 0.91402 0.97894 0.90149 0.92765 1.22413 1.01619 1.01246 0.97482 1.18991 0.93212 0.93043 0.94686 1.21487 1.31527 0.98990 1.01249 0.92542 1.25846 0.97184 0.95159 1.02058 1.70095 1.42843 1.06631 1.38900 0.85595 0.77471 0.78381 0.80434 1.20445 1.21134 1.19157 1.21729 0.93888 0.96781 1.02617 1.22162 0.99522 0.92238 0.92999 0.91962 0.92312 0.90787 0.90663 0.94766 0.90422 0.94781 0.92785 0.93393 0.94697 0.84486 0.91950 0.92747 0.92627 0.99168 0.99188 0.93346 0.90395 0.91697 0.88493 0.94853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.16 71.98 0.66 -1.49 16 2 C 0.05 0.87 5.99 86.30 0.52 1.39 16 3 N -0.55 -12.77 4.81 -896.33 -4.31 -17.08 16 4 C 0.07 1.68 5.42 86.33 0.47 2.15 16 5 C -0.10 -3.24 5.59 30.65 0.17 -3.07 16 6 C 0.09 2.85 2.36 44.99 0.11 2.95 16 7 N -0.68 -25.32 5.78 -469.07 -2.71 -28.03 16 8 C 0.10 4.14 2.35 44.91 0.11 4.25 16 9 H 0.05 2.31 7.22 -2.39 -0.02 2.29 16 10 C -0.17 -5.58 9.16 71.98 0.66 -4.93 16 11 C 0.04 2.03 4.65 29.85 0.14 2.17 16 12 C -0.49 -28.75 8.84 25.60 0.23 -28.52 16 13 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 14 C -0.01 -0.41 5.46 84.65 0.46 0.05 16 15 N -0.94 -59.12 13.29 21.45 0.28 -58.84 16 16 Si 0.96 46.68 29.54 68.60 2.03 48.70 16 17 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 18 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 19 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 20 C -0.11 -2.78 5.36 30.65 0.16 -2.62 16 21 C 0.06 1.24 4.85 86.33 0.42 1.65 16 22 H 0.06 0.83 6.21 -2.39 -0.01 0.82 16 23 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 25 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.03 0.58 8.08 -2.39 -0.02 0.56 16 27 H 0.08 1.87 8.12 -2.38 -0.02 1.85 16 28 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.05 1.71 7.53 -2.39 -0.02 1.69 16 31 H 0.04 1.04 7.10 -2.38 -0.02 1.02 16 32 H 0.34 11.71 8.05 -89.70 -0.72 10.99 16 33 H 0.06 1.74 7.45 -2.39 -0.02 1.72 16 34 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.05 1.77 8.04 -2.39 -0.02 1.75 16 36 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 37 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 38 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 39 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.10 1.71 5.81 -2.39 -0.01 1.70 16 42 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -65.64 323.15 -0.37 -66.01 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.24 Total: 15.25 kcal Atomic # 6 Polarization: -30.11 SS G_CDS: 4.10 Total: -26.01 kcal Atomic # 7 Polarization: -97.22 SS G_CDS: -6.73 Total: -103.95 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.70 kcal Total: -65.64 -0.37 -66.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695792418.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.205 kcal (2) G-P(sol) polarization free energy of solvation -65.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds