Wall clock time and date at job start Mon Mar 30 2020 04:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46904 * 109.46877 * 2 1 4 4 C 1.46898 * 110.99959 * 291.58541 * 3 2 1 5 5 C 1.53001 * 109.47328 * 279.77655 * 4 3 2 6 6 H 1.09007 * 110.36368 * 298.42261 * 5 4 3 7 7 C 1.54376 * 110.41450 * 176.07426 * 5 4 3 8 8 C 1.54265 * 105.06167 * 217.36889 * 7 5 4 9 9 C 1.54384 * 105.05450 * 359.97438 * 8 7 5 10 10 N 1.48553 * 104.59743 * 23.85733 * 9 8 7 11 11 C 1.46898 * 110.99865 * 55.53932 * 3 2 1 12 12 H 1.08998 * 109.47439 * 289.87940 * 11 3 2 13 13 C 1.53007 * 109.46853 * 169.88519 * 11 3 2 14 14 C 1.52998 * 109.47248 * 49.88966 * 11 3 2 15 15 C 1.50702 * 109.47133 * 181.91742 * 14 11 3 16 16 H 1.07997 * 120.00020 * 355.65206 * 15 14 11 17 17 C 1.37875 * 119.99837 * 175.65062 * 15 14 11 18 18 N 1.31518 * 120.00114 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99929 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47283 * 89.99999 * 19 17 15 21 21 H 1.48506 * 109.47388 * 210.00122 * 19 17 15 22 22 H 1.48505 * 109.47090 * 329.99683 * 19 17 15 23 23 H 1.08998 * 109.47424 * 183.34692 * 1 2 3 24 24 H 1.08997 * 109.47141 * 303.34970 * 1 2 3 25 25 H 1.09001 * 109.46943 * 63.34829 * 1 2 3 26 26 H 1.08994 * 109.46923 * 240.00164 * 2 1 3 27 27 H 1.08994 * 109.47027 * 119.99810 * 2 1 3 28 28 H 1.08996 * 109.47344 * 39.77401 * 4 3 2 29 29 H 1.09004 * 109.47470 * 159.77520 * 4 3 2 30 30 H 1.09006 * 110.32240 * 336.26010 * 7 5 4 31 31 H 1.09000 * 110.32841 * 98.46678 * 7 5 4 32 32 H 1.08994 * 110.32731 * 118.88787 * 8 7 5 33 33 H 1.08998 * 110.31966 * 241.00094 * 8 7 5 34 34 H 1.09001 * 110.40854 * 142.63433 * 9 8 7 35 35 H 1.09003 * 110.41083 * 264.95554 * 9 8 7 36 36 H 1.00899 * 110.99911 * 200.96185 * 10 9 8 37 37 H 1.08999 * 109.46893 * 180.02562 * 13 11 3 38 38 H 1.09002 * 109.47216 * 300.00350 * 13 11 3 39 39 H 1.08999 * 109.47264 * 60.00186 * 13 11 3 40 40 H 1.08999 * 109.47312 * 61.91509 * 14 11 3 41 41 H 1.09000 * 109.46904 * 301.91930 * 14 11 3 42 42 H 0.97002 * 120.00099 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7194 2.0495 -1.2752 5 6 2.7548 1.6348 -2.3226 6 1 3.7528 1.9454 -2.0131 7 6 2.4036 2.2433 -3.6973 8 6 2.7744 1.1538 -4.7245 9 6 3.3189 -0.0211 -3.8839 10 7 2.7119 0.1663 -2.5411 11 6 1.4634 2.1400 1.1308 12 1 0.3991 2.3083 0.9669 13 6 2.1807 3.4865 1.2471 14 6 1.6611 1.3437 2.4222 15 6 1.0488 2.0965 3.5752 16 1 0.6293 3.0790 3.4167 17 6 1.0241 1.5310 4.8324 18 7 1.5354 0.3347 5.0254 19 14 0.2645 2.4638 6.2614 20 1 -1.1802 2.1336 6.3560 21 1 0.9446 2.0758 7.5233 22 1 0.4254 3.9235 6.0411 23 1 -0.3634 -1.0259 0.0600 24 1 -0.3633 0.5649 0.8584 25 1 -0.3633 0.4610 -0.9185 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 0.7249 1.7572 -1.6120 29 1 1.7536 3.1304 -1.1387 30 1 1.3382 2.4675 -3.7510 31 1 2.9903 3.1450 -3.8733 32 1 1.8911 0.8431 -5.2823 33 1 3.5418 1.5212 -5.4057 34 1 3.0058 -0.9729 -4.3132 35 1 4.4061 0.0277 -3.8218 36 1 3.2418 -0.3203 -1.8336 37 1 1.7683 4.0465 2.0864 38 1 3.2451 3.3183 1.4108 39 1 2.0399 4.0538 0.3271 40 1 2.7268 1.2049 2.6039 41 1 1.1791 0.3708 2.3265 42 1 1.5178 -0.0634 5.9098 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695827618.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:34 Heat of formation + Delta-G solvation = 3.661533 kcal Electronic energy + Delta-G solvation = -18352.082131 eV Core-core repulsion = 15752.852744 eV Total energy + Delta-G solvation = -2599.229388 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.12792 -37.25141 -33.22075 -31.37369 -30.81340 -30.14245 -28.01226 -26.50850 -24.70728 -23.16565 -21.66529 -20.97367 -19.91964 -18.25507 -16.84257 -16.53017 -15.32715 -15.13082 -14.48475 -14.42503 -14.00222 -13.48600 -13.01636 -12.82545 -12.46095 -12.12261 -11.88598 -11.65207 -11.59108 -11.44482 -11.30799 -11.19158 -10.90874 -10.85867 -10.81360 -10.55544 -10.49862 -10.19893 -9.94665 -9.67371 -9.09231 -8.94493 -8.44788 -8.28533 -7.47278 -5.95196 -3.96112 3.34072 3.40568 3.43438 4.29933 4.42637 4.55384 4.79738 4.88754 5.01350 5.31994 5.40821 5.50959 5.55874 5.67340 5.77333 5.77998 5.86007 5.94679 5.95747 6.03497 6.06596 6.17586 6.19382 6.24481 6.30477 6.43630 6.60738 6.68221 6.85171 6.89876 6.99383 7.03657 7.19246 7.40653 7.68750 7.78559 7.93731 7.98218 8.16460 8.51188 9.10518 9.66794 11.16204 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.046973 B = 0.005204 C = 0.004965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.945302 B = 5378.838218 C = 5637.791108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.039 3.961 3 N -0.534 5.534 4 C 0.059 3.941 5 C 0.076 3.924 6 H 0.053 0.947 7 C -0.122 4.122 8 C -0.123 4.123 9 C 0.031 3.969 10 N -0.657 5.657 11 C 0.083 3.917 12 H 0.029 0.971 13 C -0.130 4.130 14 C 0.029 3.971 15 C -0.515 4.515 16 H 0.055 0.945 17 C 0.058 3.942 18 N -0.894 5.894 19 Si 0.888 3.112 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.274 1.274 23 H 0.048 0.952 24 H 0.065 0.935 25 H 0.044 0.956 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.042 0.958 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.036 0.964 36 H 0.345 0.655 37 H 0.063 0.937 38 H 0.052 0.948 39 H 0.029 0.971 40 H 0.018 0.982 41 H 0.026 0.974 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.236 1.297 -16.741 16.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.089 4.089 3 N -0.258 5.258 4 C -0.070 4.070 5 C -0.034 4.034 6 H 0.071 0.929 7 C -0.160 4.160 8 C -0.161 4.161 9 C -0.098 4.098 10 N -0.289 5.289 11 C -0.024 4.024 12 H 0.047 0.953 13 C -0.187 4.187 14 C -0.008 4.008 15 C -0.554 4.554 16 H 0.073 0.927 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.716 3.284 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.199 1.199 23 H 0.067 0.933 24 H 0.084 0.916 25 H 0.063 0.937 26 H 0.109 0.891 27 H 0.094 0.906 28 H 0.060 0.940 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.054 0.946 36 H 0.163 0.837 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.048 0.952 40 H 0.036 0.964 41 H 0.044 0.956 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.078 1.090 -16.720 16.884 hybrid contribution -0.367 0.632 0.980 1.222 sum 1.710 1.722 -15.740 15.926 Atomic orbital electron populations 1.22339 0.99015 1.01478 1.01435 1.22471 0.92876 0.90518 1.03014 1.62278 1.59331 1.02437 1.01715 1.22149 0.96454 0.98441 0.89917 1.22475 0.98601 0.88202 0.94138 0.92910 1.22337 1.01864 0.97721 0.94117 1.22257 1.00752 0.95478 0.97585 1.22910 0.96566 0.98898 0.91458 1.63927 1.53897 1.08050 1.03049 1.21800 0.94920 0.93981 0.91711 0.95342 1.21774 1.00963 0.96459 0.99517 1.19226 0.97394 0.95211 0.88978 1.21240 1.38074 1.02672 0.93393 0.92724 1.24977 0.95642 0.94936 0.98761 1.69969 1.45768 1.15209 1.22439 0.86657 0.79272 0.80232 0.82199 1.20811 1.21305 1.19944 0.93254 0.91627 0.93677 0.89149 0.90556 0.94024 0.91110 0.91208 0.91663 0.91422 0.91878 0.90658 0.94586 0.83713 0.91773 0.92932 0.95172 0.96355 0.95550 0.93130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.25 8.98 37.16 0.33 -2.91 16 2 C 0.04 0.69 5.20 -3.82 -0.02 0.67 16 3 N -0.53 -9.64 4.48 -226.65 -1.02 -10.65 16 4 C 0.06 0.90 4.52 -3.82 -0.02 0.89 16 5 C 0.08 0.99 3.43 -66.09 -0.23 0.77 16 6 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 7 C -0.12 -1.31 6.55 -25.35 -0.17 -1.48 16 8 C -0.12 -1.18 7.00 -25.34 -0.18 -1.36 16 9 C 0.03 0.32 7.47 -2.18 -0.02 0.30 16 10 N -0.66 -8.30 5.36 -102.77 -0.55 -8.85 16 11 C 0.08 1.74 1.46 -67.71 -0.10 1.64 16 12 H 0.03 0.63 6.76 -51.93 -0.35 0.27 16 13 C -0.13 -2.53 8.95 37.16 0.33 -2.20 16 14 C 0.03 0.75 3.75 -27.88 -0.10 0.64 16 15 C -0.51 -14.39 8.47 -34.44 -0.29 -14.68 16 16 H 0.05 1.49 6.69 -52.49 -0.35 1.14 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 19 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 23 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.06 1.33 5.72 -51.93 -0.30 1.03 16 25 H 0.04 0.74 6.47 -51.93 -0.34 0.41 16 26 H 0.09 1.42 4.33 -51.93 -0.22 1.20 16 27 H 0.08 1.54 6.44 -51.93 -0.33 1.20 16 28 H 0.04 0.66 6.03 -51.93 -0.31 0.35 16 29 H 0.07 1.07 5.84 -51.93 -0.30 0.77 16 30 H 0.07 0.77 7.83 -51.93 -0.41 0.36 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.34 4.48 7.30 -39.29 -0.29 4.19 16 37 H 0.06 1.32 6.66 -51.93 -0.35 0.97 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.03 0.50 6.24 -51.93 -0.32 0.18 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.03 0.72 5.57 -51.93 -0.29 0.43 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 308.67 15.07 4.65 4.65 Total: -1.00 -29.04 308.67 -8.85 -37.90 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -7.10 Total: 2.51 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -0.55 Total: -16.15 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: -0.83 Total: -45.62 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.04 -8.85 -37.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695827618.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.558 kcal (2) G-P(sol) polarization free energy of solvation -29.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds