Wall clock time and date at job start Mon Mar 30 2020 04:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46904 * 109.46877 * 2 1 4 4 C 1.46898 * 110.99959 * 291.58541 * 3 2 1 5 5 C 1.53001 * 109.47328 * 279.77655 * 4 3 2 6 6 H 1.09007 * 110.36368 * 298.42261 * 5 4 3 7 7 C 1.54376 * 110.41450 * 176.07426 * 5 4 3 8 8 C 1.54265 * 105.06167 * 217.36889 * 7 5 4 9 9 C 1.54384 * 105.05450 * 359.97438 * 8 7 5 10 10 N 1.48553 * 104.59743 * 23.85733 * 9 8 7 11 11 C 1.46898 * 110.99865 * 55.53932 * 3 2 1 12 12 H 1.08998 * 109.47439 * 289.87940 * 11 3 2 13 13 C 1.53007 * 109.46853 * 169.88519 * 11 3 2 14 14 C 1.52998 * 109.47248 * 49.88966 * 11 3 2 15 15 C 1.50702 * 109.47133 * 181.91742 * 14 11 3 16 16 H 1.07997 * 120.00020 * 355.65206 * 15 14 11 17 17 C 1.37875 * 119.99837 * 175.65062 * 15 14 11 18 18 N 1.31518 * 120.00114 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99929 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47283 * 89.99999 * 19 17 15 21 21 H 1.48506 * 109.47388 * 210.00122 * 19 17 15 22 22 H 1.48505 * 109.47090 * 329.99683 * 19 17 15 23 23 H 1.08998 * 109.47424 * 183.34692 * 1 2 3 24 24 H 1.08997 * 109.47141 * 303.34970 * 1 2 3 25 25 H 1.09001 * 109.46943 * 63.34829 * 1 2 3 26 26 H 1.08994 * 109.46923 * 240.00164 * 2 1 3 27 27 H 1.08994 * 109.47027 * 119.99810 * 2 1 3 28 28 H 1.08996 * 109.47344 * 39.77401 * 4 3 2 29 29 H 1.09004 * 109.47470 * 159.77520 * 4 3 2 30 30 H 1.09006 * 110.32240 * 336.26010 * 7 5 4 31 31 H 1.09000 * 110.32841 * 98.46678 * 7 5 4 32 32 H 1.08994 * 110.32731 * 118.88787 * 8 7 5 33 33 H 1.08998 * 110.31966 * 241.00094 * 8 7 5 34 34 H 1.09001 * 110.40854 * 142.63433 * 9 8 7 35 35 H 1.09003 * 110.41083 * 264.95554 * 9 8 7 36 36 H 1.00899 * 110.99911 * 200.96185 * 10 9 8 37 37 H 1.08999 * 109.46893 * 180.02562 * 13 11 3 38 38 H 1.09002 * 109.47216 * 300.00350 * 13 11 3 39 39 H 1.08999 * 109.47264 * 60.00186 * 13 11 3 40 40 H 1.08999 * 109.47312 * 61.91509 * 14 11 3 41 41 H 1.09000 * 109.46904 * 301.91930 * 14 11 3 42 42 H 0.97002 * 120.00099 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7194 2.0495 -1.2752 5 6 2.7548 1.6348 -2.3226 6 1 3.7528 1.9454 -2.0131 7 6 2.4036 2.2433 -3.6973 8 6 2.7744 1.1538 -4.7245 9 6 3.3189 -0.0211 -3.8839 10 7 2.7119 0.1663 -2.5411 11 6 1.4634 2.1400 1.1308 12 1 0.3991 2.3083 0.9669 13 6 2.1807 3.4865 1.2471 14 6 1.6611 1.3437 2.4222 15 6 1.0488 2.0965 3.5752 16 1 0.6293 3.0790 3.4167 17 6 1.0241 1.5310 4.8324 18 7 1.5354 0.3347 5.0254 19 14 0.2645 2.4638 6.2614 20 1 -1.1802 2.1336 6.3560 21 1 0.9446 2.0758 7.5233 22 1 0.4254 3.9235 6.0411 23 1 -0.3634 -1.0259 0.0600 24 1 -0.3633 0.5649 0.8584 25 1 -0.3633 0.4610 -0.9185 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 0.7249 1.7572 -1.6120 29 1 1.7536 3.1304 -1.1387 30 1 1.3382 2.4675 -3.7510 31 1 2.9903 3.1450 -3.8733 32 1 1.8911 0.8431 -5.2823 33 1 3.5418 1.5212 -5.4057 34 1 3.0058 -0.9729 -4.3132 35 1 4.4061 0.0277 -3.8218 36 1 3.2418 -0.3203 -1.8336 37 1 1.7683 4.0465 2.0864 38 1 3.2451 3.3183 1.4108 39 1 2.0399 4.0538 0.3271 40 1 2.7268 1.2049 2.6039 41 1 1.1791 0.3708 2.3265 42 1 1.5178 -0.0634 5.9098 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695827618.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:33 Heat of formation + Delta-G solvation = -15.370314 kcal Electronic energy + Delta-G solvation = -18352.907414 eV Core-core repulsion = 15752.852744 eV Total energy + Delta-G solvation = -2600.054670 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.35749 -38.52265 -35.21518 -33.15085 -32.07542 -31.05918 -29.50845 -28.24366 -26.16975 -24.88182 -23.23142 -21.87413 -20.94742 -19.91406 -18.61638 -17.82085 -16.73195 -16.57111 -16.19531 -15.91969 -15.40383 -14.70143 -14.51552 -14.09853 -13.76647 -13.66317 -13.29661 -13.13813 -13.00078 -12.94294 -12.74672 -12.66228 -12.52304 -12.30639 -12.17640 -12.04265 -11.86382 -11.66261 -11.35451 -11.23764 -11.02188 -10.84286 -10.48757 -9.46400 -8.95431 -8.15543 -6.24373 1.40222 1.41056 1.51861 2.42273 3.15678 3.18965 3.36042 3.90309 3.93735 4.17104 4.25505 4.32398 4.36378 4.42163 4.52327 4.62521 4.68205 4.72040 4.73772 4.80533 4.83640 4.97570 5.03136 5.09559 5.11026 5.16492 5.25556 5.28775 5.31242 5.36807 5.44281 5.46636 5.61419 5.78629 5.85924 5.97090 6.21416 6.38549 6.50353 6.51117 6.92476 7.43436 8.96447 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.046973 B = 0.005204 C = 0.004965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.945302 B = 5378.838218 C = 5637.791108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.044 3.956 3 N -0.537 5.537 4 C 0.062 3.938 5 C 0.078 3.922 6 H 0.046 0.954 7 C -0.118 4.118 8 C -0.119 4.119 9 C 0.030 3.970 10 N -0.670 5.670 11 C 0.093 3.907 12 H 0.021 0.979 13 C -0.122 4.122 14 C 0.041 3.959 15 C -0.531 4.531 16 H 0.060 0.940 17 C 0.002 3.998 18 N -0.933 5.933 19 Si 0.959 3.041 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.263 1.263 23 H 0.058 0.942 24 H 0.033 0.967 25 H 0.060 0.940 26 H 0.116 0.884 27 H 0.042 0.958 28 H 0.039 0.961 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.042 0.958 36 H 0.339 0.661 37 H 0.050 0.950 38 H 0.044 0.956 39 H 0.063 0.937 40 H -0.016 1.016 41 H 0.002 0.998 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.972 2.452 -18.371 18.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.084 4.084 3 N -0.260 5.260 4 C -0.066 4.066 5 C -0.032 4.032 6 H 0.064 0.936 7 C -0.157 4.157 8 C -0.157 4.157 9 C -0.098 4.098 10 N -0.301 5.301 11 C -0.014 4.014 12 H 0.038 0.962 13 C -0.180 4.180 14 C 0.004 3.996 15 C -0.569 4.569 16 H 0.078 0.922 17 C -0.196 4.196 18 N -0.573 5.573 19 Si 0.784 3.216 20 H -0.200 1.200 21 H -0.209 1.209 22 H -0.187 1.187 23 H 0.077 0.923 24 H 0.052 0.948 25 H 0.079 0.921 26 H 0.133 0.867 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.060 0.940 36 H 0.157 0.843 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.081 0.919 40 H 0.002 0.998 41 H 0.021 0.979 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.812 2.256 -18.376 18.603 hybrid contribution -0.264 0.219 1.433 1.474 sum 1.548 2.475 -16.943 17.193 Atomic orbital electron populations 1.22235 0.98761 1.01693 1.00667 1.22426 0.92976 0.90436 1.02525 1.62244 1.59093 1.02410 1.02260 1.22221 0.97195 0.98431 0.88742 1.22410 0.97336 0.88783 0.94702 0.93622 1.22327 1.02080 0.98522 0.92768 1.22268 1.01463 0.94583 0.97356 1.22983 0.96919 0.99768 0.90167 1.63861 1.54431 1.07695 1.04115 1.21509 0.94850 0.94323 0.90752 0.96152 1.21676 0.99992 0.95621 1.00671 1.19019 0.94523 0.94769 0.91320 1.21637 1.37913 1.03019 0.94352 0.92213 1.25887 0.96102 0.95808 1.01798 1.70111 1.47102 1.16910 1.23193 0.85544 0.78422 0.79263 0.78402 1.20046 1.20949 1.18721 0.92312 0.94781 0.92102 0.86678 0.93938 0.94253 0.90634 0.91302 0.90291 0.91018 0.90127 0.89897 0.93967 0.84333 0.93086 0.93663 0.91862 0.99756 0.97930 0.93025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.20 8.98 71.98 0.65 -5.55 16 2 C 0.04 1.60 5.20 86.30 0.45 2.05 16 3 N -0.54 -19.37 4.48 -870.99 -3.90 -23.28 16 4 C 0.06 1.81 4.52 86.30 0.39 2.20 16 5 C 0.08 1.88 3.43 45.07 0.15 2.04 16 6 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 7 C -0.12 -2.21 6.55 31.49 0.21 -2.00 16 8 C -0.12 -1.90 7.00 31.49 0.22 -1.68 16 9 C 0.03 0.56 7.47 86.45 0.65 1.20 16 10 N -0.67 -15.73 5.36 -479.04 -2.57 -18.30 16 11 C 0.09 3.98 1.46 44.92 0.07 4.05 16 12 H 0.02 0.91 6.76 -2.39 -0.02 0.89 16 13 C -0.12 -4.70 8.95 71.98 0.64 -4.05 16 14 C 0.04 2.20 3.75 29.85 0.11 2.31 16 15 C -0.53 -30.31 8.47 25.60 0.22 -30.09 16 16 H 0.06 3.28 6.69 -2.91 -0.02 3.26 16 17 C 0.00 0.09 5.46 84.65 0.46 0.55 16 18 N -0.93 -57.52 13.29 21.45 0.28 -57.23 16 19 Si 0.96 44.88 29.54 68.60 2.03 46.90 16 20 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 21 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 22 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 23 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 24 H 0.03 1.40 5.72 -2.39 -0.01 1.39 16 25 H 0.06 1.94 6.47 -2.39 -0.02 1.93 16 26 H 0.12 3.57 4.33 -2.39 -0.01 3.56 16 27 H 0.04 1.81 6.44 -2.39 -0.02 1.79 16 28 H 0.04 1.18 6.03 -2.39 -0.01 1.16 16 29 H 0.08 2.11 5.84 -2.39 -0.01 2.10 16 30 H 0.07 1.31 7.83 -2.38 -0.02 1.29 16 31 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.08 1.03 8.14 -2.39 -0.02 1.02 16 34 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.34 8.45 7.30 -89.69 -0.65 7.79 16 37 H 0.05 2.07 6.66 -2.39 -0.02 2.06 16 38 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.06 1.99 6.24 -2.39 -0.01 1.98 16 40 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 41 H 0.00 0.14 5.57 -2.39 -0.01 0.13 16 42 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -63.41 308.67 0.39 -63.02 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 0.34 Total: 17.89 kcal Atomic # 6 Polarization: -33.21 SS G_CDS: 4.21 Total: -29.00 kcal Atomic # 7 Polarization: -92.63 SS G_CDS: -6.19 Total: -98.81 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -63.41 0.39 -63.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695827618.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.650 kcal (2) G-P(sol) polarization free energy of solvation -63.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds