Wall clock time and date at job start Mon Mar 30 2020 04:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46904 * 109.47107 * 2 1 4 4 C 1.46895 * 111.00186 * 199.83864 * 3 2 1 5 5 C 1.53000 * 109.47282 * 66.04713 * 4 3 2 6 6 H 1.09005 * 109.87747 * 295.70305 * 5 4 3 7 7 C 1.54313 * 109.88942 * 174.67226 * 5 4 3 8 8 C 1.55397 * 102.90044 * 218.40700 * 7 5 4 9 9 C 1.54909 * 101.73834 * 35.48146 * 8 7 5 10 10 N 1.47436 * 109.88969 * 56.73255 * 5 4 3 11 11 C 1.46901 * 110.99817 * 75.88283 * 3 2 1 12 12 H 1.08999 * 109.47195 * 311.72316 * 11 3 2 13 13 C 1.52997 * 109.47113 * 71.72289 * 11 3 2 14 14 C 1.52998 * 109.47389 * 191.72628 * 11 3 2 15 15 C 1.50696 * 109.47282 * 64.65260 * 14 11 3 16 16 H 1.08005 * 120.00032 * 4.88116 * 15 14 11 17 17 C 1.37877 * 120.00148 * 184.88001 * 15 14 11 18 18 N 1.31519 * 120.00150 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00022 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.46977 * 90.00354 * 19 17 15 21 21 H 1.48500 * 109.47493 * 209.99916 * 19 17 15 22 22 H 1.48498 * 109.47289 * 330.00563 * 19 17 15 23 23 H 1.09001 * 109.47499 * 61.00135 * 1 2 3 24 24 H 1.09001 * 109.47500 * 181.00626 * 1 2 3 25 25 H 1.09009 * 109.47043 * 301.00604 * 1 2 3 26 26 H 1.08998 * 109.46950 * 240.00451 * 2 1 3 27 27 H 1.08989 * 109.47391 * 120.00011 * 2 1 3 28 28 H 1.08995 * 109.47216 * 186.04976 * 4 3 2 29 29 H 1.08999 * 109.46756 * 306.04566 * 4 3 2 30 30 H 1.09007 * 110.70762 * 336.69110 * 7 5 4 31 31 H 1.08998 * 110.70832 * 99.92481 * 7 5 4 32 32 H 1.08995 * 110.87127 * 277.39353 * 8 7 5 33 33 H 1.09007 * 111.05878 * 153.64809 * 8 7 5 34 34 H 1.09000 * 110.36892 * 204.19237 * 9 8 7 35 35 H 1.09000 * 110.37335 * 81.85350 * 9 8 7 36 36 H 1.00908 * 111.00251 * 356.15268 * 10 5 4 37 37 H 1.08998 * 109.47622 * 300.00032 * 13 11 3 38 38 H 1.08999 * 109.47068 * 59.99949 * 13 11 3 39 39 H 1.08998 * 109.47440 * 179.97438 * 13 11 3 40 40 H 1.08996 * 109.47469 * 184.65904 * 14 11 3 41 41 H 1.09003 * 109.47041 * 304.65842 * 14 11 3 42 42 H 0.96995 * 119.99915 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4114 1.4514 -0.4654 5 6 3.4767 1.0423 -1.9382 6 1 3.1781 -0.0004 -2.0469 7 6 4.9108 1.2362 -2.4738 8 6 4.6742 1.7688 -3.9144 9 6 3.4078 2.6404 -3.7240 10 7 2.5877 1.9046 -2.7382 11 6 1.8798 1.9928 1.3300 12 1 0.8747 1.8090 1.7096 13 6 2.9055 1.3761 2.2831 14 6 2.1190 3.5006 1.2295 15 6 1.0405 4.1251 0.3823 16 1 0.2191 3.5226 0.0234 17 6 1.1022 5.4655 0.0654 18 7 0.1607 6.0106 -0.6736 19 14 2.5225 6.5077 0.6867 20 1 3.6289 6.4773 -0.3033 21 1 2.0643 7.9078 0.8739 22 1 3.0034 5.9666 1.9833 23 1 -0.3634 0.4982 -0.8988 24 1 -0.3634 -1.0275 0.0180 25 1 -0.3633 0.5294 0.8809 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 3.7834 2.4698 -0.3544 29 1 4.0254 0.7736 0.1276 30 1 5.4497 1.9709 -1.8755 31 1 5.4462 0.2870 -2.4943 32 1 4.4829 0.9478 -4.6054 33 1 5.5166 2.3725 -4.2521 34 1 2.8699 2.7391 -4.6669 35 1 3.6779 3.6224 -3.3357 36 1 2.0743 2.5416 -2.1476 37 1 2.7350 0.3019 2.3548 38 1 3.9106 1.5598 1.9035 39 1 2.8020 1.8273 3.2698 40 1 2.0972 3.9393 2.2271 41 1 3.0916 3.6845 0.7730 42 1 0.2039 6.9536 -0.8962 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695827622.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:37 Heat of formation + Delta-G solvation = -0.941202 kcal Electronic energy + Delta-G solvation = -18879.579048 eV Core-core repulsion = 16280.150071 eV Total energy + Delta-G solvation = -2599.428977 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.06032 -37.11421 -33.07744 -31.54824 -30.76360 -29.60887 -28.11790 -27.47356 -24.10482 -23.18174 -21.48406 -20.78571 -20.04665 -18.29376 -16.61388 -16.03160 -15.69521 -15.03603 -14.64640 -14.04494 -13.89957 -13.51207 -12.88894 -12.70374 -12.41655 -12.38179 -12.20298 -11.85538 -11.72097 -11.44588 -11.34735 -11.15445 -10.99195 -10.88809 -10.71472 -10.63378 -10.51437 -10.21500 -9.84224 -9.67783 -9.53888 -9.02340 -8.43145 -7.81548 -7.44326 -5.91714 -3.85567 3.31950 3.41222 3.43415 4.36421 4.52372 4.90521 4.95621 5.04843 5.27126 5.41017 5.44617 5.54701 5.64113 5.70847 5.75132 5.80428 5.83866 5.88784 5.96450 5.99104 6.02254 6.03971 6.14566 6.21944 6.30513 6.39366 6.44110 6.51101 6.55357 6.64555 6.71400 6.89809 7.13987 7.30912 7.49783 7.82405 7.87753 7.98510 8.19992 8.71506 9.21451 9.71374 11.21843 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.016135 B = 0.010475 C = 0.008067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.972218 B = 2672.491488 C = 3470.233683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.048 3.952 3 N -0.503 5.503 4 C 0.037 3.963 5 C 0.084 3.916 6 H 0.073 0.927 7 C -0.140 4.140 8 C -0.128 4.128 9 C 0.044 3.956 10 N -0.673 5.673 11 C 0.094 3.906 12 H 0.078 0.922 13 C -0.187 4.187 14 C -0.005 4.005 15 C -0.488 4.488 16 H 0.081 0.919 17 C 0.064 3.936 18 N -0.904 5.904 19 Si 0.868 3.132 20 H -0.282 1.282 21 H -0.290 1.290 22 H -0.270 1.270 23 H 0.066 0.934 24 H 0.044 0.956 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.023 0.977 28 H 0.079 0.921 29 H 0.027 0.973 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.039 0.961 36 H 0.373 0.627 37 H 0.044 0.956 38 H 0.050 0.950 39 H 0.055 0.945 40 H 0.014 0.986 41 H 0.009 0.991 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.191 -10.836 -1.076 13.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.080 4.080 3 N -0.226 5.226 4 C -0.092 4.092 5 C -0.026 4.026 6 H 0.091 0.909 7 C -0.179 4.179 8 C -0.166 4.166 9 C -0.085 4.085 10 N -0.308 5.308 11 C -0.014 4.014 12 H 0.096 0.904 13 C -0.246 4.246 14 C -0.043 4.043 15 C -0.527 4.527 16 H 0.099 0.901 17 C -0.136 4.136 18 N -0.544 5.544 19 Si 0.697 3.303 20 H -0.208 1.208 21 H -0.217 1.217 22 H -0.195 1.195 23 H 0.085 0.915 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.041 0.959 28 H 0.097 0.903 29 H 0.045 0.955 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.057 0.943 36 H 0.195 0.805 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.032 0.968 41 H 0.027 0.973 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.591 -10.883 -1.912 13.406 hybrid contribution 1.805 0.941 1.477 2.515 sum 9.396 -9.943 -0.435 13.687 Atomic orbital electron populations 1.21703 0.95186 0.99883 1.03138 1.22096 0.96288 0.90071 0.99526 1.61998 1.18459 1.15991 1.26136 1.22656 0.90296 1.01348 0.94910 1.22239 0.90591 0.98305 0.91495 0.90881 1.22898 0.97404 1.00989 0.96570 1.22714 0.97778 0.99480 0.96610 1.22791 0.92980 0.95611 0.97165 1.61932 1.24276 1.25710 1.18881 1.21716 0.97656 0.96389 0.85659 0.90421 1.22554 1.00867 1.00105 1.01065 1.19671 0.97278 0.90494 0.96831 1.21025 1.08092 0.93798 1.29748 0.90138 1.24984 0.95541 0.97860 0.95184 1.69909 1.33667 1.12310 1.38524 0.86974 0.83559 0.80041 0.79753 1.20781 1.21655 1.19478 0.91512 0.93721 0.92771 0.91406 0.95870 0.90261 0.95464 0.91586 0.91515 0.91254 0.91611 0.91053 0.94263 0.80481 0.93684 0.93090 0.92629 0.96759 0.97251 0.93108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 10.04 37.16 0.37 -1.83 16 2 C 0.05 0.75 5.47 -3.82 -0.02 0.73 16 3 N -0.50 -9.05 3.33 -226.66 -0.76 -9.80 16 4 C 0.04 0.62 3.15 -3.83 -0.01 0.60 16 5 C 0.08 1.31 3.31 -66.73 -0.22 1.09 16 6 H 0.07 1.11 6.45 -51.93 -0.33 0.78 16 7 C -0.14 -1.85 6.49 -24.77 -0.16 -2.01 16 8 C -0.13 -1.66 7.08 -24.45 -0.17 -1.84 16 9 C 0.04 0.70 7.58 -2.30 -0.02 0.69 16 10 N -0.67 -12.06 7.30 -103.82 -0.76 -12.81 16 11 C 0.09 1.80 2.16 -67.71 -0.15 1.65 16 12 H 0.08 1.56 6.59 -51.93 -0.34 1.21 16 13 C -0.19 -3.01 8.45 37.16 0.31 -2.70 16 14 C -0.01 -0.12 3.47 -27.89 -0.10 -0.22 16 15 C -0.49 -13.33 9.38 -34.44 -0.32 -13.66 16 16 H 0.08 2.41 7.99 -52.48 -0.42 1.99 16 17 C 0.06 1.83 5.47 -17.82 -0.10 1.73 16 18 N -0.90 -27.57 13.96 55.43 0.77 -26.79 16 19 Si 0.87 21.64 27.37 -169.99 -4.65 16.99 16 20 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 22 H -0.27 -6.51 6.68 56.52 0.38 -6.13 16 23 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.89 6.75 -51.92 -0.35 0.54 16 26 H 0.07 1.01 5.96 -51.93 -0.31 0.70 16 27 H 0.02 0.34 6.28 -51.94 -0.33 0.02 16 28 H 0.08 1.50 6.02 -51.93 -0.31 1.18 16 29 H 0.03 0.42 6.83 -51.93 -0.35 0.06 16 30 H 0.07 0.89 7.80 -51.93 -0.40 0.49 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.37 7.93 7.66 -39.29 -0.30 7.63 16 37 H 0.04 0.66 6.54 -51.93 -0.34 0.32 16 38 H 0.05 0.80 6.54 -51.93 -0.34 0.46 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.01 0.34 7.54 -51.93 -0.39 -0.05 16 41 H 0.01 0.22 5.41 -51.93 -0.28 -0.06 16 42 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 312.72 15.07 4.71 4.71 Total: -1.00 -28.60 312.72 -8.61 -37.22 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -7.35 Total: 6.25 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: -0.58 Total: -15.76 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: -0.74 Total: -49.41 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.65 Total: 16.99 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.60 -8.61 -37.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695827622.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.274 kcal (2) G-P(sol) polarization free energy of solvation -28.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds