Wall clock time and date at job start Mon Mar 30 2020 04:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46904 * 109.47107 * 2 1 4 4 C 1.46895 * 111.00186 * 199.83864 * 3 2 1 5 5 C 1.53000 * 109.47282 * 66.04713 * 4 3 2 6 6 H 1.09005 * 109.87747 * 295.70305 * 5 4 3 7 7 C 1.54313 * 109.88942 * 174.67226 * 5 4 3 8 8 C 1.55397 * 102.90044 * 218.40700 * 7 5 4 9 9 C 1.54909 * 101.73834 * 35.48146 * 8 7 5 10 10 N 1.47436 * 109.88969 * 56.73255 * 5 4 3 11 11 C 1.46901 * 110.99817 * 75.88283 * 3 2 1 12 12 H 1.08999 * 109.47195 * 311.72316 * 11 3 2 13 13 C 1.52997 * 109.47113 * 71.72289 * 11 3 2 14 14 C 1.52998 * 109.47389 * 191.72628 * 11 3 2 15 15 C 1.50696 * 109.47282 * 64.65260 * 14 11 3 16 16 H 1.08005 * 120.00032 * 4.88116 * 15 14 11 17 17 C 1.37877 * 120.00148 * 184.88001 * 15 14 11 18 18 N 1.31519 * 120.00150 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00022 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.46977 * 90.00354 * 19 17 15 21 21 H 1.48500 * 109.47493 * 209.99916 * 19 17 15 22 22 H 1.48498 * 109.47289 * 330.00563 * 19 17 15 23 23 H 1.09001 * 109.47499 * 61.00135 * 1 2 3 24 24 H 1.09001 * 109.47500 * 181.00626 * 1 2 3 25 25 H 1.09009 * 109.47043 * 301.00604 * 1 2 3 26 26 H 1.08998 * 109.46950 * 240.00451 * 2 1 3 27 27 H 1.08989 * 109.47391 * 120.00011 * 2 1 3 28 28 H 1.08995 * 109.47216 * 186.04976 * 4 3 2 29 29 H 1.08999 * 109.46756 * 306.04566 * 4 3 2 30 30 H 1.09007 * 110.70762 * 336.69110 * 7 5 4 31 31 H 1.08998 * 110.70832 * 99.92481 * 7 5 4 32 32 H 1.08995 * 110.87127 * 277.39353 * 8 7 5 33 33 H 1.09007 * 111.05878 * 153.64809 * 8 7 5 34 34 H 1.09000 * 110.36892 * 204.19237 * 9 8 7 35 35 H 1.09000 * 110.37335 * 81.85350 * 9 8 7 36 36 H 1.00908 * 111.00251 * 356.15268 * 10 5 4 37 37 H 1.08998 * 109.47622 * 300.00032 * 13 11 3 38 38 H 1.08999 * 109.47068 * 59.99949 * 13 11 3 39 39 H 1.08998 * 109.47440 * 179.97438 * 13 11 3 40 40 H 1.08996 * 109.47469 * 184.65904 * 14 11 3 41 41 H 1.09003 * 109.47041 * 304.65842 * 14 11 3 42 42 H 0.96995 * 119.99915 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4114 1.4514 -0.4654 5 6 3.4767 1.0423 -1.9382 6 1 3.1781 -0.0004 -2.0469 7 6 4.9108 1.2362 -2.4738 8 6 4.6742 1.7688 -3.9144 9 6 3.4078 2.6404 -3.7240 10 7 2.5877 1.9046 -2.7382 11 6 1.8798 1.9928 1.3300 12 1 0.8747 1.8090 1.7096 13 6 2.9055 1.3761 2.2831 14 6 2.1190 3.5006 1.2295 15 6 1.0405 4.1251 0.3823 16 1 0.2191 3.5226 0.0234 17 6 1.1022 5.4655 0.0654 18 7 0.1607 6.0106 -0.6736 19 14 2.5225 6.5077 0.6867 20 1 3.6289 6.4773 -0.3033 21 1 2.0643 7.9078 0.8739 22 1 3.0034 5.9666 1.9833 23 1 -0.3634 0.4982 -0.8988 24 1 -0.3634 -1.0275 0.0180 25 1 -0.3633 0.5294 0.8809 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 3.7834 2.4698 -0.3544 29 1 4.0254 0.7736 0.1276 30 1 5.4497 1.9709 -1.8755 31 1 5.4462 0.2870 -2.4943 32 1 4.4829 0.9478 -4.6054 33 1 5.5166 2.3725 -4.2521 34 1 2.8699 2.7391 -4.6669 35 1 3.6779 3.6224 -3.3357 36 1 2.0743 2.5416 -2.1476 37 1 2.7350 0.3019 2.3548 38 1 3.9106 1.5598 1.9035 39 1 2.8020 1.8273 3.2698 40 1 2.0972 3.9393 2.2271 41 1 3.0916 3.6845 0.7730 42 1 0.2039 6.9536 -0.8962 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695827622.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:37 Heat of formation + Delta-G solvation = -20.196677 kcal Electronic energy + Delta-G solvation = -18880.414028 eV Core-core repulsion = 16280.150071 eV Total energy + Delta-G solvation = -2600.263957 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.38627 -38.43938 -35.02373 -33.27271 -32.03107 -30.81649 -29.86441 -28.81953 -25.46160 -24.86185 -23.06066 -21.95340 -21.36163 -19.72120 -18.75562 -17.37731 -16.90799 -16.59457 -16.11007 -15.77172 -15.29331 -14.79024 -14.62706 -14.11798 -13.96620 -13.73426 -13.62596 -13.43868 -13.24726 -12.79534 -12.61923 -12.60309 -12.42257 -12.28151 -12.11856 -11.97099 -11.74371 -11.67617 -11.55067 -11.32692 -11.17671 -11.02716 -10.63874 -9.18398 -8.77801 -8.14364 -6.11685 1.32986 1.36048 1.45715 2.41231 3.02323 3.23753 3.65248 3.83331 3.89674 4.00552 4.12703 4.28772 4.34299 4.43013 4.44655 4.56423 4.58346 4.66264 4.70436 4.76118 4.81365 4.93504 4.95435 5.02922 5.03818 5.07853 5.14629 5.17832 5.21813 5.26053 5.32536 5.44980 5.51863 5.58223 5.77717 6.21410 6.43222 6.52380 6.58295 6.63374 6.96378 7.48140 9.02531 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.016135 B = 0.010475 C = 0.008067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.972218 B = 2672.491488 C = 3470.233683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.052 3.948 3 N -0.527 5.527 4 C 0.044 3.956 5 C 0.083 3.917 6 H 0.082 0.918 7 C -0.134 4.134 8 C -0.117 4.117 9 C 0.037 3.963 10 N -0.688 5.688 11 C 0.097 3.903 12 H 0.062 0.938 13 C -0.176 4.176 14 C -0.001 4.001 15 C -0.478 4.478 16 H 0.039 0.961 17 C 0.004 3.996 18 N -0.953 5.953 19 Si 0.934 3.066 20 H -0.276 1.276 21 H -0.291 1.291 22 H -0.252 1.252 23 H 0.039 0.961 24 H 0.073 0.927 25 H 0.038 0.962 26 H 0.078 0.922 27 H 0.042 0.958 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.018 0.982 36 H 0.349 0.651 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.013 0.987 41 H 0.012 0.988 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.746 -12.608 -0.388 16.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.075 4.075 3 N -0.250 5.250 4 C -0.085 4.085 5 C -0.027 4.027 6 H 0.100 0.900 7 C -0.173 4.173 8 C -0.155 4.155 9 C -0.093 4.093 10 N -0.319 5.319 11 C -0.011 4.011 12 H 0.081 0.919 13 C -0.235 4.235 14 C -0.039 4.039 15 C -0.517 4.517 16 H 0.057 0.943 17 C -0.191 4.191 18 N -0.596 5.596 19 Si 0.759 3.241 20 H -0.202 1.202 21 H -0.218 1.218 22 H -0.176 1.176 23 H 0.058 0.942 24 H 0.092 0.908 25 H 0.057 0.943 26 H 0.096 0.904 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.037 0.963 36 H 0.167 0.833 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.031 0.969 41 H 0.030 0.970 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.170 -12.690 -1.219 16.308 hybrid contribution 0.902 1.436 1.216 2.087 sum 11.071 -11.254 -0.002 15.787 Atomic orbital electron populations 1.21666 0.95667 1.01114 1.01018 1.22108 0.95821 0.88799 1.00772 1.61885 1.19764 1.17735 1.25657 1.22576 0.89653 1.00279 0.95952 1.22345 0.91800 0.97967 0.90596 0.90036 1.22897 0.95867 1.02355 0.96187 1.22687 0.96480 0.99377 0.96955 1.22883 0.94548 0.95296 0.96557 1.61965 1.25457 1.25411 1.19104 1.21489 0.98068 0.94177 0.87357 0.91943 1.22410 0.99776 1.01102 1.00198 1.19600 0.95566 0.93288 0.95446 1.21194 1.07853 0.93421 1.29191 0.94259 1.25796 0.98237 0.99412 0.95665 1.70074 1.36137 1.12624 1.40727 0.85915 0.80230 0.77991 0.79931 1.20156 1.21766 1.17567 0.94189 0.90786 0.94275 0.90402 0.94037 0.92868 0.93305 0.91893 0.88727 0.89977 0.89819 0.91053 0.96350 0.83254 0.91623 0.92495 0.92071 0.96850 0.96952 0.93268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.21 10.04 71.98 0.72 -3.48 16 2 C 0.05 1.54 5.47 86.30 0.47 2.01 16 3 N -0.53 -18.63 3.33 -871.02 -2.90 -21.53 16 4 C 0.04 1.40 3.15 86.30 0.27 1.67 16 5 C 0.08 2.43 3.31 45.26 0.15 2.58 16 6 H 0.08 2.26 6.45 -2.38 -0.02 2.25 16 7 C -0.13 -3.17 6.49 31.86 0.21 -2.96 16 8 C -0.12 -2.76 7.08 32.07 0.23 -2.54 16 9 C 0.04 1.17 7.58 86.77 0.66 1.82 16 10 N -0.69 -24.77 7.30 -482.38 -3.52 -28.29 16 11 C 0.10 3.66 2.16 44.91 0.10 3.76 16 12 H 0.06 2.52 6.59 -2.39 -0.02 2.50 16 13 C -0.18 -5.16 8.45 71.98 0.61 -4.55 16 14 C 0.00 -0.07 3.47 29.85 0.10 0.04 16 15 C -0.48 -26.96 9.38 25.60 0.24 -26.72 16 16 H 0.04 2.49 7.99 -2.91 -0.02 2.47 16 17 C 0.00 0.24 5.47 84.65 0.46 0.70 16 18 N -0.95 -60.38 13.96 21.45 0.30 -60.08 16 19 Si 0.93 45.10 27.37 68.60 1.88 46.97 16 20 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 21 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 22 H -0.25 -11.33 6.68 99.48 0.66 -10.67 16 23 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.04 1.29 6.75 -2.38 -0.02 1.28 16 26 H 0.08 2.14 5.96 -2.39 -0.01 2.12 16 27 H 0.04 1.08 6.28 -2.39 -0.02 1.07 16 28 H 0.05 1.96 6.02 -2.39 -0.01 1.95 16 29 H 0.05 1.33 6.83 -2.39 -0.02 1.32 16 30 H 0.06 1.54 7.80 -2.38 -0.02 1.52 16 31 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 34 H 0.07 2.21 8.14 -2.39 -0.02 2.20 16 35 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.35 15.46 7.66 -89.69 -0.69 14.77 16 37 H 0.06 1.66 6.54 -2.39 -0.02 1.65 16 38 H 0.06 1.60 6.54 -2.39 -0.02 1.59 16 39 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.01 0.61 7.54 -2.39 -0.02 0.60 16 41 H 0.01 0.56 5.41 -2.39 -0.01 0.55 16 42 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -63.90 312.72 0.22 -63.67 By element: Atomic # 1 Polarization: 26.67 SS G_CDS: 0.25 Total: 26.92 kcal Atomic # 6 Polarization: -31.89 SS G_CDS: 4.22 Total: -27.67 kcal Atomic # 7 Polarization: -103.77 SS G_CDS: -6.13 Total: -109.90 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.88 Total: 46.97 kcal Total: -63.90 0.22 -63.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695827622.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.474 kcal (2) G-P(sol) polarization free energy of solvation -63.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds