Wall clock time and date at job start Mon Mar 30 2020 03:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46907 * 109.47296 * 2 1 4 4 C 1.47957 * 111.00297 * 169.99982 * 3 2 1 5 5 C 1.53938 * 86.18016 * 222.41705 * 4 3 2 6 6 C 1.52996 * 113.73271 * 138.07817 * 5 4 3 7 7 N 1.46906 * 109.47022 * 176.89852 * 6 5 4 8 8 C 1.46901 * 110.99793 * 293.95609 * 7 6 5 9 9 C 1.46898 * 110.99820 * 169.99926 * 7 6 5 10 10 H 1.08994 * 109.47410 * 309.99936 * 9 7 6 11 11 C 1.53001 * 109.46948 * 70.00145 * 9 7 6 12 12 C 1.53004 * 109.46619 * 189.99887 * 9 7 6 13 13 C 1.50695 * 109.46970 * 65.00549 * 12 9 7 14 14 H 1.07994 * 120.00531 * 359.97438 * 13 12 9 15 15 C 1.37883 * 119.99941 * 180.02562 * 13 12 9 16 16 N 1.31518 * 120.00002 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99789 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.46825 * 90.00623 * 17 15 13 19 19 H 1.48498 * 109.46945 * 210.00104 * 17 15 13 20 20 H 1.48492 * 109.47198 * 330.00631 * 17 15 13 21 21 C 1.48190 * 111.07048 * 70.56101 * 3 2 1 22 22 H 1.09004 * 109.47043 * 60.00141 * 1 2 3 23 23 H 1.08996 * 109.47067 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47200 * 300.00184 * 1 2 3 25 25 H 1.09001 * 109.47565 * 239.99919 * 2 1 3 26 26 H 1.09000 * 109.47163 * 119.99366 * 2 1 3 27 27 H 1.08994 * 113.75988 * 108.09490 * 4 3 2 28 28 H 1.09007 * 113.75466 * 336.73028 * 4 3 2 29 29 H 1.08999 * 113.72873 * 269.25506 * 5 4 3 30 30 H 1.08997 * 109.47190 * 56.90026 * 6 5 4 31 31 H 1.09001 * 109.47349 * 296.89593 * 6 5 4 32 32 H 1.09002 * 109.47401 * 59.99808 * 8 7 6 33 33 H 1.09001 * 109.46874 * 299.99821 * 8 7 6 34 34 H 1.09004 * 109.46970 * 179.97438 * 8 7 6 35 35 H 1.09002 * 109.47146 * 59.99940 * 11 9 7 36 36 H 1.09007 * 109.46628 * 179.97438 * 11 9 7 37 37 H 1.08991 * 109.47344 * 299.99707 * 11 9 7 38 38 H 1.09007 * 109.46734 * 185.00261 * 12 9 7 39 39 H 1.08992 * 109.47535 * 304.99943 * 12 9 7 40 40 H 0.96995 * 119.99558 * 180.02562 * 16 15 13 41 41 H 1.09004 * 113.75806 * 23.24459 * 21 3 2 42 42 H 1.08993 * 113.82719 * 251.81638 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4790 1.4315 0.2399 5 6 3.1837 2.6198 1.1730 6 6 3.9829 2.5918 2.4773 7 7 3.6861 3.7994 3.2594 8 6 4.1761 5.0034 2.5751 9 6 4.2450 3.6996 4.6143 10 1 3.9529 2.7482 5.0587 11 6 5.7712 3.7824 4.5437 12 6 3.7110 4.8486 5.4720 13 6 2.2215 4.6974 5.6431 14 1 1.7070 3.8654 5.1856 15 6 1.5152 5.6220 6.3830 16 7 0.2152 5.4898 6.5328 17 14 2.4049 7.0616 7.1739 18 1 2.4309 8.2069 6.2290 19 1 1.6949 7.4605 8.4157 20 1 3.7960 6.6619 7.5056 21 6 1.7634 2.0407 1.3040 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5137 0.8900 27 1 4.0606 1.6996 -0.6420 28 1 3.8673 0.5536 0.7563 29 1 3.2184 3.5883 0.6742 30 1 5.0484 2.5589 2.2500 31 1 3.7070 1.7087 3.0537 32 1 3.6932 5.0900 1.6017 33 1 5.2552 4.9308 2.4401 34 1 3.9429 5.8828 3.1754 35 1 6.0633 4.7339 4.0993 36 1 6.1858 3.7088 5.5492 37 1 6.1516 2.9640 3.9327 38 1 4.1931 4.8268 6.4494 39 1 3.9260 5.7982 4.9820 40 1 -0.2816 6.1404 7.0530 41 1 1.6490 1.3414 2.1322 42 1 0.9770 2.7947 1.2707 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695831411.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:52 Heat of formation + Delta-G solvation = 35.246044 kcal Electronic energy + Delta-G solvation = -18054.741265 eV Core-core repulsion = 15456.881485 eV Total energy + Delta-G solvation = -2597.859780 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.99067 -37.68430 -33.37552 -32.42985 -30.88245 -28.10517 -27.84841 -26.06704 -25.80432 -23.82950 -22.27458 -20.79517 -19.32601 -18.75599 -16.56097 -16.04748 -15.59107 -15.38005 -14.95432 -14.33153 -13.83267 -13.76931 -13.42892 -12.95289 -12.62206 -12.44137 -12.21891 -12.07223 -11.96571 -11.68140 -11.49329 -11.28623 -11.15916 -11.04886 -10.76694 -10.57403 -10.37144 -10.18069 -10.02010 -9.70455 -9.51047 -9.01529 -8.70406 -8.40565 -7.48204 -5.89323 -3.83128 3.36499 3.44270 3.46425 4.02450 4.33440 4.55603 4.78420 4.94361 5.08075 5.15167 5.35862 5.44547 5.47962 5.52321 5.61914 5.63076 5.69232 5.70908 5.77519 5.84563 5.88918 5.92099 5.97273 6.05719 6.07405 6.13259 6.19557 6.38277 6.43155 6.49710 6.54518 6.61947 6.80032 7.14864 7.16136 7.34913 7.80992 7.84769 7.98322 8.73987 9.23305 9.73815 11.24730 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025497 B = 0.005979 C = 0.005148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.924915 B = 4682.069210 C = 5437.281879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.017 3.983 3 N -0.486 5.486 4 C 0.004 3.996 5 C -0.106 4.106 6 C 0.063 3.937 7 N -0.510 5.510 8 C 0.024 3.976 9 C 0.095 3.905 10 H 0.073 0.927 11 C -0.187 4.187 12 C -0.007 4.007 13 C -0.489 4.489 14 H 0.078 0.922 15 C 0.061 3.939 16 N -0.908 5.908 17 Si 0.872 3.128 18 H -0.280 1.280 19 H -0.290 1.290 20 H -0.269 1.269 21 C 0.021 3.979 22 H 0.060 0.940 23 H 0.055 0.945 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.037 0.963 27 H 0.083 0.917 28 H 0.066 0.934 29 H 0.099 0.901 30 H 0.027 0.973 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.016 0.984 34 H 0.075 0.925 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.042 0.958 38 H 0.017 0.983 39 H 0.013 0.987 40 H 0.259 0.741 41 H 0.070 0.930 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.677 -8.132 -11.368 15.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 N -0.209 5.209 4 C -0.126 4.126 5 C -0.125 4.125 6 C -0.066 4.066 7 N -0.232 5.232 8 C -0.124 4.124 9 C -0.013 4.013 10 H 0.091 0.909 11 C -0.246 4.246 12 C -0.044 4.044 13 C -0.527 4.527 14 H 0.097 0.903 15 C -0.138 4.138 16 N -0.548 5.548 17 Si 0.700 3.300 18 H -0.206 1.206 19 H -0.217 1.217 20 H -0.194 1.194 21 C -0.107 4.107 22 H 0.079 0.921 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.088 0.912 26 H 0.056 0.944 27 H 0.101 0.899 28 H 0.084 0.916 29 H 0.117 0.883 30 H 0.045 0.955 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.034 0.966 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.035 0.965 39 H 0.031 0.969 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.708 -7.762 -11.840 15.666 hybrid contribution 1.522 0.296 1.114 1.910 sum 8.230 -7.466 -10.726 15.444 Atomic orbital electron populations 1.21720 0.94745 1.01370 1.02755 1.22562 0.96698 0.91297 1.00579 1.68585 1.06333 1.14315 1.31699 1.23960 0.91288 0.98197 0.99139 1.22979 0.95617 0.98665 0.95273 1.22119 0.96392 0.94475 0.93581 1.62042 1.58626 1.00776 1.01765 1.22422 0.96251 0.94689 0.99078 1.21702 0.89324 1.01374 0.88866 0.90877 1.22560 0.99742 1.00822 1.01458 1.19690 0.97900 0.93037 0.93801 1.21045 0.90244 1.11292 1.30162 0.90347 1.25010 0.94673 0.97661 0.96455 1.69912 1.06506 1.36571 1.41844 0.86910 0.80272 0.83687 0.79118 1.20578 1.21660 1.19356 1.23912 0.98336 0.98313 0.90169 0.92058 0.92576 0.92296 0.91218 0.94434 0.89877 0.91625 0.88262 0.95510 0.91397 0.92285 0.96613 0.90637 0.92773 0.92599 0.93896 0.96521 0.96888 0.93104 0.91135 0.89117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.98 37.16 0.37 -1.25 16 2 C 0.02 0.20 5.54 -3.82 -0.02 0.18 16 3 N -0.49 -6.38 6.26 -238.07 -1.49 -7.87 16 4 C 0.00 0.04 7.54 -2.76 -0.02 0.02 16 5 C -0.11 -1.46 3.86 -89.69 -0.35 -1.81 16 6 C 0.06 0.94 4.37 -3.82 -0.02 0.93 16 7 N -0.51 -9.34 4.43 -234.88 -1.04 -10.38 16 8 C 0.02 0.40 8.48 60.07 0.51 0.91 16 9 C 0.10 1.86 2.26 -67.71 -0.15 1.70 16 10 H 0.07 1.47 7.93 -51.93 -0.41 1.06 16 11 C -0.19 -2.99 8.44 37.16 0.31 -2.68 16 12 C -0.01 -0.16 3.44 -27.88 -0.10 -0.26 16 13 C -0.49 -13.80 9.39 -34.44 -0.32 -14.12 16 14 H 0.08 2.42 7.99 -52.49 -0.42 2.00 16 15 C 0.06 1.80 5.47 -17.82 -0.10 1.70 16 16 N -0.91 -28.30 13.96 55.43 0.77 -27.53 16 17 Si 0.87 21.89 27.47 -169.99 -4.67 17.22 16 18 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 20 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 21 C 0.02 0.31 6.68 -2.63 -0.02 0.29 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.71 7.54 -51.93 -0.39 0.31 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.04 0.42 7.70 -51.93 -0.40 0.02 16 27 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.07 0.72 7.75 -51.93 -0.40 0.32 16 29 H 0.10 1.42 6.30 -51.93 -0.33 1.10 16 30 H 0.03 0.37 7.06 -51.93 -0.37 0.01 16 31 H 0.07 1.03 7.67 -51.93 -0.40 0.63 16 32 H 0.06 0.91 6.31 -51.93 -0.33 0.58 16 33 H 0.02 0.24 6.46 -51.93 -0.34 -0.10 16 34 H 0.07 1.42 6.21 -51.93 -0.32 1.09 16 35 H 0.05 0.85 6.42 -51.93 -0.33 0.52 16 36 H 0.05 0.86 8.14 -51.92 -0.42 0.44 16 37 H 0.04 0.61 6.91 -51.93 -0.36 0.25 16 38 H 0.02 0.40 7.20 -51.92 -0.37 0.02 16 39 H 0.01 0.31 5.69 -51.93 -0.30 0.01 16 40 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 41 H 0.07 1.06 7.57 -51.93 -0.39 0.66 16 42 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 318.17 15.07 4.79 4.79 Total: -1.00 -30.21 318.17 -9.09 -39.30 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -7.56 Total: -1.15 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: 0.10 Total: -14.39 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: -1.76 Total: -45.78 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.21 -9.09 -39.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695831411.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.544 kcal (2) G-P(sol) polarization free energy of solvation -30.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds