Wall clock time and date at job start Mon Mar 30 2020 03:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46901 * 109.47008 * 2 1 4 4 C 1.47847 * 110.99660 * 63.65528 * 3 2 1 5 5 C 1.54910 * 104.78924 * 146.36301 * 4 3 2 6 6 C 1.55135 * 101.65479 * 322.93002 * 5 4 3 7 7 C 1.47437 * 110.99557 * 184.49745 * 3 2 1 8 8 H 1.09008 * 109.88712 * 117.17467 * 7 3 2 9 9 C 1.52998 * 109.89309 * 356.14848 * 7 3 2 10 10 N 1.46901 * 109.47384 * 176.97185 * 9 7 3 11 11 C 1.46897 * 111.00205 * 174.79976 * 10 9 7 12 12 H 1.09000 * 109.47184 * 325.00042 * 11 10 9 13 13 C 1.52997 * 109.47150 * 85.00241 * 11 10 9 14 14 C 1.52996 * 109.47341 * 205.00089 * 11 10 9 15 15 C 1.50703 * 109.46954 * 64.99568 * 14 11 10 16 16 H 1.07997 * 120.00041 * 0.02562 * 15 14 11 17 17 C 1.37880 * 119.99773 * 179.97438 * 15 14 11 18 18 N 1.31514 * 119.99664 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 120.00092 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47243 * 89.99652 * 19 17 15 21 21 H 1.48505 * 109.47300 * 209.99418 * 19 17 15 22 22 H 1.48495 * 109.47360 * 329.99663 * 19 17 15 23 23 H 1.09001 * 109.47236 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47667 * 299.99818 * 1 2 3 25 25 H 1.09002 * 109.46752 * 60.00583 * 1 2 3 26 26 H 1.08997 * 109.46999 * 239.99527 * 2 1 3 27 27 H 1.09002 * 109.46707 * 119.99972 * 2 1 3 28 28 H 1.09001 * 110.37296 * 265.18567 * 4 3 2 29 29 H 1.08993 * 110.37769 * 27.53535 * 4 3 2 30 30 H 1.09006 * 110.98937 * 81.02292 * 5 4 3 31 31 H 1.09001 * 110.99081 * 204.79506 * 5 4 3 32 32 H 1.09009 * 110.70491 * 277.26702 * 6 5 4 33 33 H 1.09007 * 110.70681 * 154.04025 * 6 5 4 34 34 H 1.09004 * 109.46699 * 56.97419 * 9 7 3 35 35 H 1.08998 * 109.47266 * 296.97301 * 9 7 3 36 36 H 1.00900 * 111.00037 * 298.75808 * 10 9 7 37 37 H 1.09000 * 109.47253 * 180.02562 * 13 11 10 38 38 H 1.09007 * 109.47187 * 300.00168 * 13 11 10 39 39 H 1.09000 * 109.47240 * 59.99835 * 13 11 10 40 40 H 1.08998 * 109.47325 * 184.99812 * 14 11 10 41 41 H 1.09002 * 109.47087 * 305.00012 * 14 11 10 42 42 H 0.97000 * 119.99756 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6188 2.0886 1.2369 5 6 2.7875 3.0605 1.5356 6 6 4.0157 2.2138 1.1099 7 6 3.4895 1.4257 -0.1079 8 1 3.7798 1.9276 -1.0310 9 6 4.0524 0.0031 -0.0900 10 7 5.5095 0.0506 -0.2708 11 6 6.1006 -1.2874 -0.1360 12 1 5.5514 -1.8531 0.6165 13 6 6.0239 -2.0164 -1.4789 14 6 7.5641 -1.1577 0.2909 15 6 7.6336 -0.5505 1.6685 16 1 6.7248 -0.2841 2.1876 17 6 8.8573 -0.3360 2.2664 18 7 8.9179 0.1934 3.4687 19 14 10.4291 -0.7974 1.3687 20 1 10.8979 0.3597 0.5647 21 1 11.4732 -1.1686 2.3574 22 1 10.1660 -1.9502 0.4703 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 0.6951 2.6443 1.0750 29 1 1.4972 1.3787 2.0550 30 1 2.7079 3.9643 0.9313 31 1 2.8301 3.3055 2.5968 32 1 4.3117 1.5349 1.9098 33 1 4.8469 2.8579 0.8225 34 1 3.6047 -0.5749 -0.8985 35 1 3.8200 -0.4676 0.8652 36 1 5.7504 0.4647 -1.1588 37 1 6.4621 -3.0094 -1.3788 38 1 4.9812 -2.1088 -1.7831 39 1 6.5731 -1.4506 -2.2314 40 1 8.0273 -2.1443 0.3050 41 1 8.0933 -0.5179 -0.4152 42 1 9.7789 0.3446 3.8892 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695834463.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:43 Heat of formation + Delta-G solvation = -2.021847 kcal Electronic energy + Delta-G solvation = -18148.589545 eV Core-core repulsion = 15549.113708 eV Total energy + Delta-G solvation = -2599.475837 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.50277 -36.54824 -33.23580 -32.74239 -31.41906 -28.85229 -28.15674 -27.51293 -23.98620 -23.10352 -22.42154 -20.79770 -19.85445 -18.91134 -16.54722 -16.16222 -15.65671 -15.13706 -14.55248 -14.30317 -14.14327 -13.59673 -13.30177 -12.86668 -12.75798 -12.38266 -12.27609 -12.12652 -11.77238 -11.65993 -11.41520 -11.16139 -11.04420 -10.91914 -10.78246 -10.73102 -10.58391 -10.35678 -10.11252 -9.76872 -9.55478 -9.02851 -8.40185 -8.16568 -7.57762 -5.88950 -3.82359 3.37870 3.45043 3.47571 4.00598 4.56526 4.72687 4.85958 4.98895 5.11379 5.17315 5.32844 5.34982 5.46089 5.48831 5.58986 5.63878 5.67003 5.74052 5.79267 5.84316 5.91227 5.94001 6.04246 6.05386 6.12403 6.16794 6.29176 6.36563 6.49025 6.55751 6.69439 6.81554 7.11037 7.15517 7.20174 7.34667 7.82365 7.93255 8.10771 8.74564 9.22023 9.74490 11.25208 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028121 B = 0.006012 C = 0.005266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.449045 B = 4656.594244 C = 5315.927937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.039 3.961 3 N -0.526 5.526 4 C 0.043 3.957 5 C -0.135 4.135 6 C -0.119 4.119 7 C 0.076 3.924 8 H 0.080 0.920 9 C 0.048 3.952 10 N -0.659 5.659 11 C 0.100 3.900 12 H 0.067 0.933 13 C -0.182 4.182 14 C -0.004 4.004 15 C -0.486 4.486 16 H 0.075 0.925 17 C 0.060 3.940 18 N -0.910 5.910 19 Si 0.875 3.125 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.269 1.269 23 H 0.055 0.945 24 H 0.052 0.948 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.038 0.962 28 H 0.073 0.927 29 H 0.044 0.956 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.024 0.976 35 H 0.068 0.932 36 H 0.330 0.670 37 H 0.056 0.944 38 H 0.040 0.960 39 H 0.051 0.949 40 H 0.015 0.985 41 H 0.011 0.989 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.211 1.006 -7.925 16.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.089 4.089 3 N -0.251 5.251 4 C -0.085 4.085 5 C -0.173 4.173 6 C -0.157 4.157 7 C -0.032 4.032 8 H 0.098 0.902 9 C -0.083 4.083 10 N -0.289 5.289 11 C -0.010 4.010 12 H 0.086 0.914 13 C -0.241 4.241 14 C -0.042 4.042 15 C -0.525 4.525 16 H 0.093 0.907 17 C -0.139 4.139 18 N -0.550 5.550 19 Si 0.703 3.297 20 H -0.206 1.206 21 H -0.217 1.217 22 H -0.194 1.194 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.056 0.944 28 H 0.092 0.908 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.042 0.958 35 H 0.086 0.914 36 H 0.148 0.852 37 H 0.075 0.925 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.033 0.967 41 H 0.030 0.970 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.193 1.466 -7.561 16.148 hybrid contribution 1.040 -1.063 -0.553 1.587 sum -13.153 0.403 -8.114 15.460 Atomic orbital electron populations 1.21802 0.95384 1.01240 1.02145 1.22320 0.95412 0.90036 1.01144 1.63823 1.10548 1.14445 1.36248 1.23032 0.98516 0.96277 0.90672 1.22757 0.95057 0.98267 1.01197 1.22658 0.96981 0.98483 0.97602 1.22365 0.85707 0.95715 0.99414 0.90193 1.22557 0.89728 0.95816 1.00173 1.60367 1.07432 1.22553 1.38537 1.21544 0.98521 0.87163 0.93764 0.91449 1.22594 1.00073 1.01580 0.99900 1.19608 0.90661 0.96205 0.97685 1.21012 0.94071 1.38706 0.98670 0.90681 1.25011 0.98741 0.95359 0.94808 1.69913 1.24836 1.45667 1.14622 0.86867 0.83940 0.79211 0.79671 1.20580 1.21745 1.19398 0.92600 0.92910 0.92153 0.90543 0.94380 0.90824 0.93751 0.91216 0.91083 0.90391 0.90463 0.95767 0.91363 0.85208 0.92525 0.94113 0.93014 0.96655 0.97038 0.93139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.88 37.16 0.37 -1.11 16 2 C 0.04 0.47 4.39 -3.82 -0.02 0.45 16 3 N -0.53 -6.93 5.20 -223.35 -1.16 -8.10 16 4 C 0.04 0.52 5.51 -2.29 -0.01 0.51 16 5 C -0.13 -1.72 7.08 -24.59 -0.17 -1.90 16 6 C -0.12 -1.84 6.23 -24.91 -0.16 -2.00 16 7 C 0.08 1.10 3.67 -66.73 -0.24 0.86 16 8 H 0.08 1.16 8.14 -51.92 -0.42 0.74 16 9 C 0.05 0.74 3.58 -3.82 -0.01 0.73 16 10 N -0.66 -11.88 5.69 -106.73 -0.61 -12.49 16 11 C 0.10 1.93 2.53 -67.72 -0.17 1.76 16 12 H 0.07 1.37 7.72 -51.93 -0.40 0.97 16 13 C -0.18 -2.87 9.16 37.16 0.34 -2.53 16 14 C 0.00 -0.09 3.72 -27.88 -0.10 -0.20 16 15 C -0.49 -13.81 9.39 -34.44 -0.32 -14.13 16 16 H 0.08 2.33 7.99 -52.49 -0.42 1.91 16 17 C 0.06 1.77 5.47 -17.82 -0.10 1.67 16 18 N -0.91 -28.46 13.96 55.43 0.77 -27.69 16 19 Si 0.87 22.09 27.47 -169.99 -4.67 17.42 16 20 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 22 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.52 7.30 -51.93 -0.38 0.14 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.08 0.92 6.34 -51.93 -0.33 0.59 16 27 H 0.04 0.49 6.75 -51.93 -0.35 0.14 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.04 0.55 7.71 -51.93 -0.40 0.15 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 1.42 7.80 -51.92 -0.40 1.02 16 33 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.02 0.35 5.69 -51.93 -0.30 0.06 16 35 H 0.07 1.16 6.74 -51.93 -0.35 0.81 16 36 H 0.33 5.51 8.53 -39.29 -0.34 5.17 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.04 0.57 7.56 -51.92 -0.39 0.18 16 39 H 0.05 0.78 8.13 -51.93 -0.42 0.36 16 40 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 41 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 42 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 320.15 15.07 4.82 4.82 Total: -1.00 -30.17 320.15 -9.24 -39.41 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -7.79 Total: 2.51 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: -0.61 Total: -15.89 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: -1.00 Total: -48.28 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.17 -9.24 -39.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695834463.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.388 kcal (2) G-P(sol) polarization free energy of solvation -30.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds