Wall clock time and date at job start Mon Mar 30 2020 03:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46901 * 109.47008 * 2 1 4 4 C 1.47847 * 110.99660 * 63.65528 * 3 2 1 5 5 C 1.54910 * 104.78924 * 146.36301 * 4 3 2 6 6 C 1.55135 * 101.65479 * 322.93002 * 5 4 3 7 7 C 1.47437 * 110.99557 * 184.49745 * 3 2 1 8 8 H 1.09008 * 109.88712 * 117.17467 * 7 3 2 9 9 C 1.52998 * 109.89309 * 356.14848 * 7 3 2 10 10 N 1.46901 * 109.47384 * 176.97185 * 9 7 3 11 11 C 1.46897 * 111.00205 * 174.79976 * 10 9 7 12 12 H 1.09000 * 109.47184 * 325.00042 * 11 10 9 13 13 C 1.52997 * 109.47150 * 85.00241 * 11 10 9 14 14 C 1.52996 * 109.47341 * 205.00089 * 11 10 9 15 15 C 1.50703 * 109.46954 * 64.99568 * 14 11 10 16 16 H 1.07997 * 120.00041 * 0.02562 * 15 14 11 17 17 C 1.37880 * 119.99773 * 179.97438 * 15 14 11 18 18 N 1.31514 * 119.99664 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 120.00092 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47243 * 89.99652 * 19 17 15 21 21 H 1.48505 * 109.47300 * 209.99418 * 19 17 15 22 22 H 1.48495 * 109.47360 * 329.99663 * 19 17 15 23 23 H 1.09001 * 109.47236 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47667 * 299.99818 * 1 2 3 25 25 H 1.09002 * 109.46752 * 60.00583 * 1 2 3 26 26 H 1.08997 * 109.46999 * 239.99527 * 2 1 3 27 27 H 1.09002 * 109.46707 * 119.99972 * 2 1 3 28 28 H 1.09001 * 110.37296 * 265.18567 * 4 3 2 29 29 H 1.08993 * 110.37769 * 27.53535 * 4 3 2 30 30 H 1.09006 * 110.98937 * 81.02292 * 5 4 3 31 31 H 1.09001 * 110.99081 * 204.79506 * 5 4 3 32 32 H 1.09009 * 110.70491 * 277.26702 * 6 5 4 33 33 H 1.09007 * 110.70681 * 154.04025 * 6 5 4 34 34 H 1.09004 * 109.46699 * 56.97419 * 9 7 3 35 35 H 1.08998 * 109.47266 * 296.97301 * 9 7 3 36 36 H 1.00900 * 111.00037 * 298.75808 * 10 9 7 37 37 H 1.09000 * 109.47253 * 180.02562 * 13 11 10 38 38 H 1.09007 * 109.47187 * 300.00168 * 13 11 10 39 39 H 1.09000 * 109.47240 * 59.99835 * 13 11 10 40 40 H 1.08998 * 109.47325 * 184.99812 * 14 11 10 41 41 H 1.09002 * 109.47087 * 305.00012 * 14 11 10 42 42 H 0.97000 * 119.99756 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6188 2.0886 1.2369 5 6 2.7875 3.0605 1.5356 6 6 4.0157 2.2138 1.1099 7 6 3.4895 1.4257 -0.1079 8 1 3.7798 1.9276 -1.0310 9 6 4.0524 0.0031 -0.0900 10 7 5.5095 0.0506 -0.2708 11 6 6.1006 -1.2874 -0.1360 12 1 5.5514 -1.8531 0.6165 13 6 6.0239 -2.0164 -1.4789 14 6 7.5641 -1.1577 0.2909 15 6 7.6336 -0.5505 1.6685 16 1 6.7248 -0.2841 2.1876 17 6 8.8573 -0.3360 2.2664 18 7 8.9179 0.1934 3.4687 19 14 10.4291 -0.7974 1.3687 20 1 10.8979 0.3597 0.5647 21 1 11.4732 -1.1686 2.3574 22 1 10.1660 -1.9502 0.4703 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 0.6951 2.6443 1.0750 29 1 1.4972 1.3787 2.0550 30 1 2.7079 3.9643 0.9313 31 1 2.8301 3.3055 2.5968 32 1 4.3117 1.5349 1.9098 33 1 4.8469 2.8579 0.8225 34 1 3.6047 -0.5749 -0.8985 35 1 3.8200 -0.4676 0.8652 36 1 5.7504 0.4647 -1.1588 37 1 6.4621 -3.0094 -1.3788 38 1 4.9812 -2.1088 -1.7831 39 1 6.5731 -1.4506 -2.2314 40 1 8.0273 -2.1443 0.3050 41 1 8.0933 -0.5179 -0.4152 42 1 9.7789 0.3446 3.8892 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695834463.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:43 Heat of formation + Delta-G solvation = -23.190071 kcal Electronic energy + Delta-G solvation = -18149.507468 eV Core-core repulsion = 15549.113708 eV Total energy + Delta-G solvation = -2600.393761 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.64578 -38.03857 -34.79425 -34.24384 -33.00272 -30.18999 -29.56881 -28.88092 -25.37428 -24.36287 -23.99404 -21.94380 -21.44923 -20.12059 -18.76051 -17.31359 -16.86276 -16.37734 -16.27299 -15.63242 -15.48659 -15.12570 -14.62881 -14.37710 -13.93848 -13.91762 -13.71520 -13.39965 -13.27305 -13.02168 -12.64467 -12.53943 -12.39500 -12.10400 -12.01491 -11.97240 -11.84409 -11.72334 -11.68856 -11.55532 -11.33080 -11.15864 -10.66723 -9.26484 -8.97719 -8.16619 -6.15188 1.38268 1.39572 1.50597 2.43108 2.90552 3.17975 3.48194 3.74652 3.84149 3.90807 4.14938 4.20279 4.29080 4.31805 4.40589 4.45298 4.53358 4.58423 4.62017 4.64859 4.76416 4.92520 4.96495 4.99223 5.04169 5.06618 5.13607 5.16268 5.20493 5.25202 5.30979 5.33105 5.43469 5.52219 5.76925 6.00288 6.12066 6.34074 6.50860 6.74387 6.92411 7.45237 9.00990 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028121 B = 0.006012 C = 0.005266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.449045 B = 4656.594244 C = 5315.927937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.037 3.963 3 N -0.524 5.524 4 C 0.044 3.956 5 C -0.128 4.128 6 C -0.121 4.121 7 C 0.082 3.918 8 H 0.086 0.914 9 C 0.060 3.940 10 N -0.680 5.680 11 C 0.104 3.896 12 H 0.048 0.952 13 C -0.170 4.170 14 C -0.002 4.002 15 C -0.486 4.486 16 H 0.030 0.970 17 C -0.006 4.006 18 N -0.960 5.960 19 Si 0.947 3.053 20 H -0.272 1.272 21 H -0.290 1.290 22 H -0.247 1.247 23 H 0.068 0.932 24 H 0.054 0.946 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.023 0.977 28 H 0.095 0.905 29 H 0.039 0.961 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.039 0.961 33 H 0.063 0.937 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.340 0.660 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.019 0.981 41 H 0.016 0.984 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.861 0.543 -10.401 18.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.091 4.091 3 N -0.249 5.249 4 C -0.083 4.083 5 C -0.166 4.166 6 C -0.159 4.159 7 C -0.026 4.026 8 H 0.104 0.896 9 C -0.070 4.070 10 N -0.311 5.311 11 C -0.006 4.006 12 H 0.067 0.933 13 C -0.229 4.229 14 C -0.040 4.040 15 C -0.525 4.525 16 H 0.048 0.952 17 C -0.200 4.200 18 N -0.603 5.603 19 Si 0.772 3.228 20 H -0.197 1.197 21 H -0.217 1.217 22 H -0.171 1.171 23 H 0.087 0.913 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.097 0.903 27 H 0.041 0.959 28 H 0.113 0.887 29 H 0.057 0.943 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.159 0.841 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.037 0.963 41 H 0.035 0.965 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.869 0.995 -10.060 17.980 hybrid contribution 1.167 -0.887 0.299 1.496 sum -13.702 0.108 -9.761 16.823 Atomic orbital electron populations 1.21752 0.93441 1.02275 1.02427 1.22381 0.97025 0.89190 1.00534 1.63921 1.09169 1.15222 1.36571 1.23088 0.98982 0.96062 0.90211 1.22743 0.93673 0.98452 1.01711 1.22560 0.97986 0.98242 0.97155 1.22284 0.86788 0.94718 0.98833 0.89580 1.22437 0.88329 0.96699 0.99530 1.60208 1.09143 1.22337 1.39457 1.21316 0.95549 0.88137 0.95595 0.93344 1.22426 1.01765 1.01315 0.97365 1.19573 0.93976 0.95655 0.94789 1.21269 0.92422 1.38107 1.00699 0.95207 1.25970 1.02881 0.95519 0.95634 1.70092 1.25811 1.47670 1.16726 0.85703 0.78805 0.79734 0.78553 1.19714 1.21662 1.17085 0.91272 0.92720 0.91694 0.90293 0.95858 0.88667 0.94298 0.89775 0.90723 0.94255 0.91810 0.93789 0.93717 0.84121 0.91913 0.92064 0.91892 0.96285 0.96521 0.93145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.88 71.98 0.71 -1.80 16 2 C 0.04 0.83 4.39 86.30 0.38 1.21 16 3 N -0.52 -13.12 5.20 -860.54 -4.48 -17.60 16 4 C 0.04 1.03 5.51 86.77 0.48 1.51 16 5 C -0.13 -3.22 7.08 31.98 0.23 -2.99 16 6 C -0.12 -3.90 6.23 31.77 0.20 -3.70 16 7 C 0.08 2.35 3.67 45.26 0.17 2.52 16 8 H 0.09 2.39 8.14 -2.38 -0.02 2.38 16 9 C 0.06 1.86 3.58 86.30 0.31 2.17 16 10 N -0.68 -24.53 5.69 -491.59 -2.80 -27.33 16 11 C 0.10 3.96 2.53 44.91 0.11 4.08 16 12 H 0.05 2.00 7.72 -2.39 -0.02 1.99 16 13 C -0.17 -4.87 9.16 71.98 0.66 -4.21 16 14 C 0.00 -0.10 3.72 29.85 0.11 0.01 16 15 C -0.49 -28.45 9.39 25.60 0.24 -28.20 16 16 H 0.03 1.96 7.99 -2.91 -0.02 1.93 16 17 C -0.01 -0.33 5.47 84.66 0.46 0.13 16 18 N -0.96 -62.14 13.96 21.45 0.30 -61.84 16 19 Si 0.95 45.56 27.47 68.60 1.88 47.44 16 20 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 21 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 22 H -0.25 -10.93 6.54 99.48 0.65 -10.28 16 23 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.05 0.95 7.30 -2.39 -0.02 0.93 16 25 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.08 1.74 6.34 -2.39 -0.02 1.73 16 27 H 0.02 0.60 6.75 -2.39 -0.02 0.58 16 28 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.04 0.95 7.71 -2.39 -0.02 0.93 16 30 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 31 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.04 1.55 7.80 -2.38 -0.02 1.53 16 33 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 34 H 0.04 1.20 5.69 -2.39 -0.01 1.18 16 35 H 0.04 1.59 6.74 -2.39 -0.02 1.57 16 36 H 0.34 10.95 8.53 -89.69 -0.76 10.19 16 37 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.06 1.52 7.56 -2.38 -0.02 1.50 16 39 H 0.06 1.68 8.13 -2.39 -0.02 1.66 16 40 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 41 H 0.02 0.76 7.57 -2.39 -0.02 0.74 16 42 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -66.84 320.15 -0.89 -67.73 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: 0.14 Total: 20.87 kcal Atomic # 6 Polarization: -33.33 SS G_CDS: 4.06 Total: -29.28 kcal Atomic # 7 Polarization: -99.79 SS G_CDS: -6.98 Total: -106.77 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.88 Total: 47.44 kcal Total: -66.84 -0.89 -67.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695834463.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.540 kcal (2) G-P(sol) polarization free energy of solvation -66.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds