Wall clock time and date at job start Mon Mar 30 2020 03:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46908 * 109.46950 * 2 1 4 4 C 1.47447 * 110.99586 * 53.97809 * 3 2 1 5 5 C 1.54361 * 107.25125 * 123.29319 * 4 3 2 6 6 C 1.55142 * 102.99799 * 22.22182 * 5 4 3 7 7 C 1.47847 * 110.99878 * 174.81613 * 3 2 1 8 8 H 1.09000 * 110.37425 * 332.46691 * 7 3 2 9 9 C 1.53003 * 110.46437 * 94.76344 * 7 3 2 10 10 N 1.46893 * 109.47048 * 301.87888 * 9 7 3 11 11 C 1.46897 * 110.99979 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.47159 * 35.00460 * 11 10 9 13 13 C 1.52997 * 109.47330 * 275.00076 * 11 10 9 14 14 C 1.53007 * 109.47210 * 154.99815 * 11 10 9 15 15 C 1.50698 * 109.47242 * 294.99968 * 14 11 10 16 16 H 1.08001 * 119.99798 * 0.02562 * 15 14 11 17 17 C 1.37878 * 119.99962 * 179.97438 * 15 14 11 18 18 N 1.31509 * 119.99953 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99933 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47310 * 60.00101 * 19 17 15 21 21 H 1.48494 * 109.47085 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47164 * 300.00074 * 19 17 15 23 23 H 1.08996 * 109.47492 * 53.73089 * 1 2 3 24 24 H 1.09005 * 109.46510 * 173.72827 * 1 2 3 25 25 H 1.08997 * 109.47550 * 293.72299 * 1 2 3 26 26 H 1.09004 * 109.47431 * 240.00277 * 2 1 3 27 27 H 1.09004 * 109.47759 * 120.00126 * 2 1 3 28 28 H 1.09006 * 109.88457 * 242.66467 * 4 3 2 29 29 H 1.09000 * 109.88897 * 3.84557 * 4 3 2 30 30 H 1.09002 * 110.68691 * 263.86214 * 5 4 3 31 31 H 1.08994 * 110.74379 * 140.61853 * 5 4 3 32 32 H 1.09000 * 110.98853 * 206.28193 * 6 5 4 33 33 H 1.09005 * 110.98718 * 82.51094 * 6 5 4 34 34 H 1.09003 * 109.46948 * 61.88098 * 9 7 3 35 35 H 1.08997 * 109.46734 * 181.88152 * 9 7 3 36 36 H 1.00905 * 110.99988 * 303.95478 * 10 9 7 37 37 H 1.08994 * 109.47314 * 59.99821 * 13 11 10 38 38 H 1.09002 * 109.47458 * 179.97438 * 13 11 10 39 39 H 1.09007 * 109.46945 * 299.99652 * 13 11 10 40 40 H 1.09000 * 109.46909 * 55.00309 * 14 11 10 41 41 H 1.09000 * 109.46924 * 174.99667 * 14 11 10 42 42 H 0.97000 * 120.00150 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.4324 2.1530 1.1134 5 6 2.6023 2.7147 1.9492 6 6 3.7840 2.7083 0.9439 7 6 3.4922 1.4264 0.1247 8 1 3.8529 0.5459 0.6565 9 6 4.1437 1.5173 -1.2567 10 7 3.7288 0.3668 -2.0704 11 6 4.3369 0.4203 -3.4065 12 1 5.3384 0.8445 -3.3332 13 6 3.4786 1.2945 -4.3229 14 6 4.4232 -0.9937 -3.9846 15 6 5.3666 -1.8209 -3.1501 16 1 5.8555 -1.3822 -2.2928 17 6 5.6049 -3.1382 -3.4803 18 7 5.0092 -3.6725 -4.5239 19 14 6.7738 -4.1638 -2.4454 20 1 6.2717 -4.2292 -1.0495 21 1 6.8576 -5.5361 -3.0066 22 1 8.1220 -3.5414 -2.4578 23 1 -0.3634 0.6079 -0.8285 24 1 -0.3632 -1.0216 -0.1123 25 1 -0.3634 0.4134 0.9408 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 0.8304 2.9728 0.7214 29 1 0.8158 1.4992 1.7302 30 1 2.8153 2.0655 2.7985 31 1 2.3859 3.7293 2.2832 32 1 4.7387 2.6305 1.4641 33 1 3.7596 3.5927 0.3072 34 1 3.8312 2.4399 -1.7458 35 1 5.2282 1.5131 -1.1478 36 1 3.9498 -0.5020 -1.6073 37 1 3.4171 2.3018 -3.9111 38 1 3.9300 1.3346 -5.3142 39 1 2.4772 0.8703 -4.3962 40 1 3.4337 -1.4509 -3.9754 41 1 4.7915 -0.9453 -5.0093 42 1 5.1771 -4.5991 -4.7565 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695834485.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:45 Heat of formation + Delta-G solvation = -12.268225 kcal Electronic energy + Delta-G solvation = -18196.601657 eV Core-core repulsion = 15596.681504 eV Total energy + Delta-G solvation = -2599.920154 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.19657 -36.27975 -33.26972 -32.76196 -31.22344 -28.48885 -28.04347 -27.31704 -24.26267 -22.97915 -22.07323 -20.53122 -19.69608 -19.15567 -16.41838 -16.26254 -15.58456 -14.75077 -14.56385 -14.32055 -13.94460 -13.61559 -13.10603 -12.98893 -12.78344 -12.11152 -11.80148 -11.59278 -11.52363 -11.43907 -11.30933 -11.20487 -11.06400 -10.89396 -10.73878 -10.63644 -10.50903 -10.44981 -10.28855 -10.09764 -9.16075 -9.01583 -8.37222 -7.96105 -7.44103 -6.00493 -4.03331 3.30831 3.36175 3.37731 4.16807 4.44194 4.63668 4.72710 4.99919 5.14781 5.32296 5.37782 5.43501 5.51521 5.59497 5.65321 5.74540 5.80056 5.85480 5.89109 6.00128 6.04743 6.11485 6.14284 6.23457 6.33670 6.37559 6.42455 6.48474 6.61542 6.66463 7.03568 7.05436 7.32504 7.44875 7.61298 7.68279 8.00751 8.18232 8.36450 8.43629 9.02892 9.60383 11.10356 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022998 B = 0.006129 C = 0.005906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.196921 B = 4567.698785 C = 4740.184470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.046 3.954 3 N -0.505 5.505 4 C 0.036 3.964 5 C -0.142 4.142 6 C -0.124 4.124 7 C 0.075 3.925 8 H 0.050 0.950 9 C 0.077 3.923 10 N -0.672 5.672 11 C 0.088 3.912 12 H 0.025 0.975 13 C -0.131 4.131 14 C 0.021 3.979 15 C -0.522 4.522 16 H 0.050 0.950 17 C 0.061 3.939 18 N -0.891 5.891 19 Si 0.888 3.112 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.278 1.278 23 H 0.063 0.937 24 H 0.056 0.944 25 H 0.045 0.955 26 H 0.102 0.898 27 H 0.020 0.980 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.021 0.979 36 H 0.347 0.653 37 H 0.036 0.964 38 H 0.044 0.956 39 H 0.054 0.946 40 H 0.025 0.975 41 H 0.019 0.981 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.616 11.016 10.911 16.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.082 4.082 3 N -0.230 5.230 4 C -0.092 4.092 5 C -0.181 4.181 6 C -0.162 4.162 7 C -0.033 4.033 8 H 0.068 0.932 9 C -0.053 4.053 10 N -0.305 5.305 11 C -0.021 4.021 12 H 0.043 0.957 13 C -0.189 4.189 14 C -0.016 4.016 15 C -0.561 4.561 16 H 0.068 0.932 17 C -0.141 4.141 18 N -0.530 5.530 19 Si 0.716 3.284 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.204 1.204 23 H 0.082 0.918 24 H 0.075 0.925 25 H 0.064 0.936 26 H 0.120 0.880 27 H 0.038 0.962 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.039 0.961 36 H 0.168 0.832 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.044 0.956 41 H 0.038 0.962 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.381 11.331 10.113 16.473 hybrid contribution 1.856 -1.302 1.556 2.749 sum -4.525 10.029 11.668 16.038 Atomic orbital electron populations 1.21861 0.95739 1.01606 1.01410 1.22359 0.95065 0.89046 1.01738 1.63488 1.04983 1.12811 1.41684 1.22913 0.96624 0.97966 0.91684 1.22781 0.96037 1.01197 0.98059 1.22708 0.97884 0.98367 0.97283 1.22620 0.88289 0.96594 0.95821 0.93222 1.21879 0.95072 0.96271 0.92092 1.60539 1.61971 1.04632 1.03339 1.21590 0.93453 0.98591 0.88500 0.95699 1.21748 1.00612 0.98425 0.98145 1.19267 0.97432 0.88912 0.95991 1.21138 1.26443 0.95986 1.12506 0.93216 1.24977 0.96014 0.97920 0.95152 1.69948 1.42916 1.13831 1.26279 0.86723 0.81549 0.79483 0.80608 1.20305 1.21276 1.20412 0.91791 0.92496 0.93608 0.87953 0.96181 0.91095 0.92844 0.91940 0.91179 0.91231 0.90613 0.91376 0.96059 0.83238 0.94491 0.93732 0.92698 0.95635 0.96230 0.92934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.53 37.16 0.35 -1.53 16 2 C 0.05 0.67 5.39 -3.82 -0.02 0.65 16 3 N -0.51 -7.25 4.84 -223.34 -1.08 -8.33 16 4 C 0.04 0.43 6.20 -2.81 -0.02 0.41 16 5 C -0.14 -1.48 6.95 -24.89 -0.17 -1.65 16 6 C -0.12 -1.44 6.49 -24.59 -0.16 -1.59 16 7 C 0.08 1.08 2.73 -66.19 -0.18 0.90 16 8 H 0.05 0.76 7.69 -51.93 -0.40 0.36 16 9 C 0.08 1.27 5.23 -3.83 -0.02 1.25 16 10 N -0.67 -12.97 4.69 -106.73 -0.50 -13.47 16 11 C 0.09 1.86 2.59 -67.71 -0.18 1.69 16 12 H 0.02 0.55 7.80 -51.93 -0.40 0.14 16 13 C -0.13 -2.46 9.41 37.16 0.35 -2.12 16 14 C 0.02 0.55 4.57 -27.88 -0.13 0.42 16 15 C -0.52 -14.38 8.12 -34.44 -0.28 -14.66 16 16 H 0.05 1.33 7.49 -52.49 -0.39 0.94 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 19 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.04 0.51 6.39 -51.93 -0.33 0.18 16 26 H 0.10 1.77 6.38 -51.93 -0.33 1.44 16 27 H 0.02 0.29 7.96 -51.93 -0.41 -0.12 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.60 5.94 -51.93 -0.31 0.29 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.87 8.02 -51.93 -0.42 0.45 16 34 H 0.07 1.12 7.39 -51.93 -0.38 0.74 16 35 H 0.02 0.36 8.05 -51.93 -0.42 -0.06 16 36 H 0.35 7.31 6.82 -39.29 -0.27 7.04 16 37 H 0.04 0.63 7.45 -51.93 -0.39 0.24 16 38 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 323.46 15.07 4.87 4.87 Total: -1.00 -28.57 323.46 -9.36 -37.92 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -7.82 Total: 2.97 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: -0.55 Total: -14.60 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: -0.85 Total: -47.62 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.57 -9.36 -37.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695834485.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.656 kcal (2) G-P(sol) polarization free energy of solvation -28.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds