Wall clock time and date at job start Mon Mar 30 2020 03:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46908 * 109.46950 * 2 1 4 4 C 1.47447 * 110.99586 * 53.97809 * 3 2 1 5 5 C 1.54361 * 107.25125 * 123.29319 * 4 3 2 6 6 C 1.55142 * 102.99799 * 22.22182 * 5 4 3 7 7 C 1.47847 * 110.99878 * 174.81613 * 3 2 1 8 8 H 1.09000 * 110.37425 * 332.46691 * 7 3 2 9 9 C 1.53003 * 110.46437 * 94.76344 * 7 3 2 10 10 N 1.46893 * 109.47048 * 301.87888 * 9 7 3 11 11 C 1.46897 * 110.99979 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.47159 * 35.00460 * 11 10 9 13 13 C 1.52997 * 109.47330 * 275.00076 * 11 10 9 14 14 C 1.53007 * 109.47210 * 154.99815 * 11 10 9 15 15 C 1.50698 * 109.47242 * 294.99968 * 14 11 10 16 16 H 1.08001 * 119.99798 * 0.02562 * 15 14 11 17 17 C 1.37878 * 119.99962 * 179.97438 * 15 14 11 18 18 N 1.31509 * 119.99953 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99933 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47310 * 60.00101 * 19 17 15 21 21 H 1.48494 * 109.47085 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47164 * 300.00074 * 19 17 15 23 23 H 1.08996 * 109.47492 * 53.73089 * 1 2 3 24 24 H 1.09005 * 109.46510 * 173.72827 * 1 2 3 25 25 H 1.08997 * 109.47550 * 293.72299 * 1 2 3 26 26 H 1.09004 * 109.47431 * 240.00277 * 2 1 3 27 27 H 1.09004 * 109.47759 * 120.00126 * 2 1 3 28 28 H 1.09006 * 109.88457 * 242.66467 * 4 3 2 29 29 H 1.09000 * 109.88897 * 3.84557 * 4 3 2 30 30 H 1.09002 * 110.68691 * 263.86214 * 5 4 3 31 31 H 1.08994 * 110.74379 * 140.61853 * 5 4 3 32 32 H 1.09000 * 110.98853 * 206.28193 * 6 5 4 33 33 H 1.09005 * 110.98718 * 82.51094 * 6 5 4 34 34 H 1.09003 * 109.46948 * 61.88098 * 9 7 3 35 35 H 1.08997 * 109.46734 * 181.88152 * 9 7 3 36 36 H 1.00905 * 110.99988 * 303.95478 * 10 9 7 37 37 H 1.08994 * 109.47314 * 59.99821 * 13 11 10 38 38 H 1.09002 * 109.47458 * 179.97438 * 13 11 10 39 39 H 1.09007 * 109.46945 * 299.99652 * 13 11 10 40 40 H 1.09000 * 109.46909 * 55.00309 * 14 11 10 41 41 H 1.09000 * 109.46924 * 174.99667 * 14 11 10 42 42 H 0.97000 * 120.00150 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.4324 2.1530 1.1134 5 6 2.6023 2.7147 1.9492 6 6 3.7840 2.7083 0.9439 7 6 3.4922 1.4264 0.1247 8 1 3.8529 0.5459 0.6565 9 6 4.1437 1.5173 -1.2567 10 7 3.7288 0.3668 -2.0704 11 6 4.3369 0.4203 -3.4065 12 1 5.3384 0.8445 -3.3332 13 6 3.4786 1.2945 -4.3229 14 6 4.4232 -0.9937 -3.9846 15 6 5.3666 -1.8209 -3.1501 16 1 5.8555 -1.3822 -2.2928 17 6 5.6049 -3.1382 -3.4803 18 7 5.0092 -3.6725 -4.5239 19 14 6.7738 -4.1638 -2.4454 20 1 6.2717 -4.2292 -1.0495 21 1 6.8576 -5.5361 -3.0066 22 1 8.1220 -3.5414 -2.4578 23 1 -0.3634 0.6079 -0.8285 24 1 -0.3632 -1.0216 -0.1123 25 1 -0.3634 0.4134 0.9408 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 0.8304 2.9728 0.7214 29 1 0.8158 1.4992 1.7302 30 1 2.8153 2.0655 2.7985 31 1 2.3859 3.7293 2.2832 32 1 4.7387 2.6305 1.4641 33 1 3.7596 3.5927 0.3072 34 1 3.8312 2.4399 -1.7458 35 1 5.2282 1.5131 -1.1478 36 1 3.9498 -0.5020 -1.6073 37 1 3.4171 2.3018 -3.9111 38 1 3.9300 1.3346 -5.3142 39 1 2.4772 0.8703 -4.3962 40 1 3.4337 -1.4509 -3.9754 41 1 4.7915 -0.9453 -5.0093 42 1 5.1771 -4.5991 -4.7565 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695834485.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:45 Heat of formation + Delta-G solvation = -30.134514 kcal Electronic energy + Delta-G solvation = -18197.376398 eV Core-core repulsion = 15596.681504 eV Total energy + Delta-G solvation = -2600.694894 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.28207 -37.93064 -34.88332 -34.22492 -32.73952 -29.66644 -29.31318 -29.14960 -25.66104 -24.74641 -23.29174 -21.61736 -20.96128 -20.67602 -18.50380 -17.41649 -16.91697 -16.41478 -16.18058 -15.77121 -15.13511 -14.78114 -14.65344 -14.14977 -13.97997 -13.59322 -13.50700 -13.21980 -13.05294 -12.89679 -12.73681 -12.56608 -12.41393 -12.38959 -12.03942 -11.95914 -11.93649 -11.70001 -11.61934 -11.48762 -11.15906 -10.94024 -10.56845 -9.12021 -8.95615 -8.18813 -6.29331 1.38412 1.40336 1.48189 2.39671 3.08141 3.13765 3.44367 3.78487 3.95204 4.11434 4.24488 4.32437 4.36886 4.44554 4.48039 4.62778 4.66440 4.69971 4.75873 4.80206 4.85211 4.92066 4.98969 5.04054 5.07205 5.13277 5.20192 5.25609 5.34657 5.36440 5.39044 5.44537 5.52100 5.57719 5.85578 6.21897 6.23934 6.36171 6.52614 6.72399 6.85589 7.39068 8.92642 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022998 B = 0.006129 C = 0.005906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.196921 B = 4567.698785 C = 4740.184470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.048 3.952 3 N -0.519 5.519 4 C 0.034 3.966 5 C -0.134 4.134 6 C -0.118 4.118 7 C 0.075 3.925 8 H 0.037 0.963 9 C 0.080 3.920 10 N -0.670 5.670 11 C 0.096 3.904 12 H 0.020 0.980 13 C -0.122 4.122 14 C 0.030 3.970 15 C -0.533 4.533 16 H 0.055 0.945 17 C 0.005 3.995 18 N -0.930 5.930 19 Si 0.959 3.041 20 H -0.267 1.267 21 H -0.284 1.284 22 H -0.270 1.270 23 H 0.055 0.945 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.019 0.981 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.019 0.981 36 H 0.335 0.665 37 H 0.058 0.942 38 H 0.049 0.951 39 H 0.046 0.954 40 H -0.004 1.004 41 H -0.008 1.008 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.422 12.259 12.965 18.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.080 4.080 3 N -0.244 5.244 4 C -0.093 4.093 5 C -0.172 4.172 6 C -0.157 4.157 7 C -0.034 4.034 8 H 0.055 0.945 9 C -0.050 4.050 10 N -0.302 5.302 11 C -0.014 4.014 12 H 0.038 0.962 13 C -0.180 4.180 14 C -0.007 4.007 15 C -0.571 4.571 16 H 0.073 0.927 17 C -0.193 4.193 18 N -0.570 5.570 19 Si 0.784 3.216 20 H -0.192 1.192 21 H -0.210 1.210 22 H -0.196 1.196 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.038 0.962 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.110 0.890 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.037 0.963 36 H 0.154 0.846 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.014 0.986 41 H 0.011 0.989 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.192 12.603 12.177 18.587 hybrid contribution 1.767 -1.665 0.888 2.586 sum -4.424 10.938 13.065 17.604 Atomic orbital electron populations 1.21794 0.94153 1.01850 1.02060 1.22243 0.96369 0.89320 1.00104 1.63422 1.04963 1.12552 1.43426 1.22976 0.97256 0.97878 0.91219 1.22760 0.94509 1.02472 0.97504 1.22695 0.99074 0.96676 0.97247 1.22576 0.88413 0.97798 0.94608 0.94453 1.21940 0.95194 0.94884 0.92989 1.60592 1.61687 1.05080 1.02811 1.21411 0.94034 0.95970 0.89948 0.96205 1.21642 0.99508 0.98860 0.97955 1.19110 0.95271 0.91629 0.94731 1.21460 1.26475 0.96513 1.12646 0.92701 1.25874 0.97751 0.99324 0.96340 1.70088 1.44548 1.14264 1.28065 0.85596 0.79332 0.77571 0.79102 1.19193 1.20980 1.19551 0.92599 0.92187 0.91703 0.91212 0.96236 0.90563 0.92170 0.91470 0.89043 0.90086 0.90222 0.91024 0.96262 0.84627 0.92322 0.93224 0.93510 0.98559 0.98938 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 9.53 71.98 0.69 -2.75 16 2 C 0.05 1.39 5.39 86.30 0.47 1.86 16 3 N -0.52 -14.24 4.84 -860.51 -4.17 -18.41 16 4 C 0.03 0.72 6.20 86.66 0.54 1.26 16 5 C -0.13 -2.35 6.95 31.79 0.22 -2.13 16 6 C -0.12 -2.43 6.49 31.98 0.21 -2.22 16 7 C 0.07 2.06 2.73 45.38 0.12 2.18 16 8 H 0.04 1.12 7.69 -2.39 -0.02 1.10 16 9 C 0.08 2.56 5.23 86.31 0.45 3.01 16 10 N -0.67 -26.16 4.69 -491.58 -2.30 -28.46 16 11 C 0.10 4.12 2.59 44.92 0.12 4.24 16 12 H 0.02 0.87 7.80 -2.39 -0.02 0.85 16 13 C -0.12 -4.53 9.41 71.98 0.68 -3.85 16 14 C 0.03 1.60 4.57 29.85 0.14 1.74 16 15 C -0.53 -29.88 8.12 25.60 0.21 -29.68 16 16 H 0.05 2.96 7.49 -2.91 -0.02 2.94 16 17 C 0.01 0.30 5.46 84.66 0.46 0.77 16 18 N -0.93 -56.67 13.29 21.45 0.28 -56.39 16 19 Si 0.96 44.22 29.54 68.60 2.03 46.24 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 21 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 23 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 25 H 0.06 1.32 6.39 -2.39 -0.02 1.30 16 26 H 0.07 2.49 6.38 -2.38 -0.02 2.48 16 27 H 0.02 0.56 7.96 -2.38 -0.02 0.54 16 28 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 29 H 0.06 1.19 5.94 -2.39 -0.01 1.17 16 30 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.08 1.59 8.02 -2.38 -0.02 1.57 16 34 H 0.07 2.25 7.39 -2.39 -0.02 2.23 16 35 H 0.02 0.63 8.05 -2.39 -0.02 0.61 16 36 H 0.33 14.47 6.82 -89.69 -0.61 13.86 16 37 H 0.06 1.92 7.45 -2.39 -0.02 1.90 16 38 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 40 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 41 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 42 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -61.84 323.46 0.48 -61.36 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.35 Total: 21.23 kcal Atomic # 6 Polarization: -29.87 SS G_CDS: 4.29 Total: -25.58 kcal Atomic # 7 Polarization: -97.07 SS G_CDS: -6.19 Total: -103.25 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -61.84 0.48 -61.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695834485.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.226 kcal (2) G-P(sol) polarization free energy of solvation -61.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds