Wall clock time and date at job start Mon Mar 30 2020 03:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46893 * 109.47198 * 2 1 4 4 C 1.46900 * 111.00322 * 164.39831 * 3 2 1 5 5 C 1.53004 * 109.47020 * 283.83369 * 4 3 2 6 6 C 1.53932 * 113.73558 * 273.00162 * 5 4 3 7 7 N 1.48186 * 86.10176 * 221.95647 * 6 5 4 8 8 C 1.46894 * 111.06964 * 137.52339 * 7 6 5 9 9 C 1.47962 * 90.80027 * 24.59940 * 7 6 5 10 10 C 1.46898 * 111.00206 * 288.35005 * 3 2 1 11 11 H 1.09002 * 109.47348 * 48.50725 * 10 3 2 12 12 C 1.53005 * 109.47322 * 288.50870 * 10 3 2 13 13 C 1.52998 * 109.47552 * 168.50715 * 10 3 2 14 14 C 1.50702 * 109.46982 * 297.33595 * 13 10 3 15 15 H 1.08001 * 120.00233 * 4.30672 * 14 13 10 16 16 C 1.37879 * 119.99853 * 184.30884 * 14 13 10 17 17 N 1.31514 * 120.00090 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99858 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47085 * 89.99700 * 18 16 14 20 20 H 1.48498 * 109.47491 * 209.99908 * 18 16 14 21 21 H 1.48499 * 109.47275 * 330.00007 * 18 16 14 22 22 H 1.09002 * 109.46942 * 64.38756 * 1 2 3 23 23 H 1.08997 * 109.47106 * 184.38367 * 1 2 3 24 24 H 1.08996 * 109.47552 * 304.39102 * 1 2 3 25 25 H 1.08999 * 109.47205 * 119.99594 * 2 1 3 26 26 H 1.09001 * 109.47584 * 239.99818 * 2 1 3 27 27 H 1.08999 * 109.47305 * 43.83044 * 4 3 2 28 28 H 1.09001 * 109.47409 * 163.83487 * 4 3 2 29 29 H 1.08999 * 112.93641 * 44.56839 * 5 4 3 30 30 H 1.08997 * 113.76099 * 336.24240 * 6 5 4 31 31 H 1.09006 * 113.75579 * 107.60191 * 6 5 4 32 32 H 1.08998 * 109.47259 * 320.56118 * 8 7 6 33 33 H 1.08993 * 109.47456 * 80.56955 * 8 7 6 34 34 H 1.09004 * 109.47075 * 200.56465 * 8 7 6 35 35 H 1.08995 * 113.76049 * 221.08409 * 9 7 6 36 36 H 1.08996 * 113.85480 * 89.72905 * 9 7 6 37 37 H 1.09002 * 109.46729 * 59.99270 * 12 10 3 38 38 H 1.08995 * 109.47146 * 179.97438 * 12 10 3 39 39 H 1.08999 * 109.46441 * 299.99807 * 12 10 3 40 40 H 1.08999 * 109.47326 * 57.33795 * 13 10 3 41 41 H 1.09004 * 109.47630 * 177.33789 * 13 10 3 42 42 H 0.96998 * 119.99657 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 3.4405 1.4410 0.3688 5 6 3.5835 1.2428 1.8792 6 6 3.4633 2.5462 2.6893 7 7 4.5973 2.0323 3.4930 8 6 5.5705 3.0962 3.7739 9 6 5.0444 1.1900 2.3616 10 6 1.7881 2.0252 -1.3017 11 1 0.7577 1.8535 -1.6129 12 6 2.7406 1.4289 -2.3400 13 6 2.0408 3.5295 -1.1823 14 6 1.0591 4.1280 -0.2081 15 1 0.3742 3.4891 0.3296 16 6 1.0352 5.4912 -0.0032 17 7 1.8689 6.2693 -0.6584 18 14 -0.1821 6.2332 1.2038 19 1 0.4328 6.2913 2.5543 20 1 -0.5415 7.6053 0.7642 21 1 -1.4054 5.3928 1.2528 22 1 -0.3633 0.4443 -0.9267 23 1 -0.3633 -1.0246 0.0785 24 1 -0.3634 0.5804 0.8480 25 1 1.8933 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 3.9830 0.6533 -0.1539 28 1 3.8504 2.4116 0.0894 29 1 2.9657 0.4302 2.2614 30 1 3.7014 3.4426 2.1168 31 1 2.5311 2.6318 3.2477 32 1 5.6840 3.7268 2.8922 33 1 5.2173 3.7001 4.6097 34 1 6.5323 2.6509 4.0284 35 1 5.3731 0.1941 2.6586 36 1 5.7461 1.6873 1.6921 37 1 2.5605 0.3572 -2.4250 38 1 2.5684 1.9037 -3.3059 39 1 3.7709 1.6007 -2.0288 40 1 3.0565 3.7001 -0.8257 41 1 1.9150 3.9977 -2.1586 42 1 1.8523 7.2283 -0.5140 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695834961.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:15 Heat of formation + Delta-G solvation = 12.002382 kcal Electronic energy + Delta-G solvation = -18637.080446 eV Core-core repulsion = 16038.212745 eV Total energy + Delta-G solvation = -2598.867701 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.98720 -39.15745 -35.08500 -33.07764 -32.58965 -30.01507 -29.11729 -27.01136 -26.68238 -25.20942 -23.37000 -23.02973 -20.57119 -19.86020 -18.30565 -16.97757 -16.92434 -16.61044 -16.08880 -15.71280 -15.49954 -15.09133 -14.60894 -14.39389 -13.92085 -13.68526 -13.52872 -13.46830 -13.19770 -13.02835 -12.64666 -12.46342 -12.38054 -12.32391 -12.25663 -12.17339 -11.92162 -11.55838 -11.37228 -11.14799 -11.04046 -10.93401 -10.43451 -9.78642 -8.79591 -8.06999 -6.09642 1.40982 1.41931 1.52034 2.48373 3.06121 3.08720 3.29263 3.72371 3.91509 4.15506 4.19877 4.35029 4.39194 4.43789 4.48045 4.54790 4.60067 4.61999 4.65477 4.74244 4.77459 4.80832 4.88838 4.93706 5.01611 5.02082 5.14777 5.18405 5.24937 5.28414 5.36397 5.43785 5.51477 5.60396 5.76812 5.94215 6.10990 6.38795 6.56084 6.63179 7.04766 7.55748 9.05014 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.014416 B = 0.010206 C = 0.007396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.829586 B = 2742.784606 C = 3784.693448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.048 3.952 3 N -0.528 5.528 4 C 0.073 3.927 5 C -0.093 4.093 6 C 0.017 3.983 7 N -0.497 5.497 8 C -0.010 4.010 9 C 0.012 3.988 10 C 0.093 3.907 11 H 0.065 0.935 12 C -0.174 4.174 13 C 0.039 3.961 14 C -0.485 4.485 15 H 0.059 0.941 16 C -0.002 4.002 17 N -0.941 5.941 18 Si 0.946 3.054 19 H -0.280 1.280 20 H -0.289 1.289 21 H -0.266 1.266 22 H 0.041 0.959 23 H 0.075 0.925 24 H 0.045 0.955 25 H 0.080 0.920 26 H 0.038 0.962 27 H 0.045 0.955 28 H 0.050 0.950 29 H 0.102 0.898 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.024 0.976 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.052 0.948 39 H 0.050 0.950 40 H -0.008 1.008 41 H -0.011 1.011 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.513 -13.146 3.630 14.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.080 4.080 3 N -0.251 5.251 4 C -0.055 4.055 5 C -0.112 4.112 6 C -0.112 4.112 7 N -0.219 5.219 8 C -0.159 4.159 9 C -0.117 4.117 10 C -0.015 4.015 11 H 0.083 0.917 12 C -0.233 4.233 13 C 0.002 3.998 14 C -0.523 4.523 15 H 0.077 0.923 16 C -0.198 4.198 17 N -0.584 5.584 18 Si 0.773 3.227 19 H -0.206 1.206 20 H -0.215 1.215 21 H -0.191 1.191 22 H 0.060 0.940 23 H 0.094 0.906 24 H 0.064 0.936 25 H 0.098 0.902 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.120 0.880 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.043 0.957 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.125 0.875 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.010 0.990 41 H 0.007 0.993 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.169 -12.993 4.629 14.409 hybrid contribution 0.115 1.307 -0.925 1.605 sum 4.283 -11.686 3.704 12.986 Atomic orbital electron populations 1.21717 0.95218 1.01548 1.01339 1.22172 0.96130 0.88799 1.00851 1.61995 1.17130 1.16508 1.29489 1.21983 0.89034 0.99961 0.94557 1.22863 0.96558 0.97653 0.94130 1.23807 0.95616 0.97104 0.94632 1.68476 1.06596 1.15588 1.31233 1.22853 0.97395 0.94966 1.00709 1.23987 0.95935 0.99930 0.91829 1.21618 0.98043 0.94715 0.87150 0.91665 1.22394 1.00057 1.00978 0.99835 1.19030 0.95263 0.90832 0.94668 1.21442 1.17521 0.91293 1.22080 0.92251 1.25750 0.97746 0.98209 0.98085 1.70090 1.39647 1.04270 1.44356 0.85727 0.80053 0.77460 0.79478 1.20594 1.21531 1.19071 0.93966 0.90601 0.93566 0.90174 0.94359 0.93677 0.93113 0.87971 0.93429 0.91017 0.95728 0.91426 0.89671 0.87534 0.91306 0.91486 0.92851 0.93120 0.98966 0.99301 0.93546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.84 9.88 71.98 0.71 -3.13 16 2 C 0.05 1.33 5.40 86.30 0.47 1.79 16 3 N -0.53 -18.62 3.94 -871.00 -3.43 -22.05 16 4 C 0.07 2.38 3.37 86.30 0.29 2.67 16 5 C -0.09 -2.75 3.91 -10.15 -0.04 -2.79 16 6 C 0.02 0.60 7.54 86.37 0.65 1.25 16 7 N -0.50 -14.69 6.55 -933.49 -6.12 -20.81 16 8 C -0.01 -0.27 9.65 127.69 1.23 0.96 16 9 C 0.01 0.31 7.55 86.41 0.65 0.96 16 10 C 0.09 3.68 2.17 44.92 0.10 3.78 16 11 H 0.07 2.65 6.43 -2.39 -0.02 2.64 16 12 C -0.17 -5.67 8.52 71.98 0.61 -5.06 16 13 C 0.04 2.01 4.39 29.85 0.13 2.14 16 14 C -0.48 -27.05 8.80 25.60 0.23 -26.83 16 15 H 0.06 3.30 7.69 -2.91 -0.02 3.28 16 16 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 17 N -0.94 -57.60 13.29 21.45 0.28 -57.31 16 18 Si 0.95 45.71 29.54 68.60 2.03 47.73 16 19 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 20 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 21 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 22 H 0.04 1.24 6.73 -2.39 -0.02 1.22 16 23 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.05 1.41 8.14 -2.39 -0.02 1.40 16 25 H 0.08 1.97 6.60 -2.39 -0.02 1.95 16 26 H 0.04 0.98 6.34 -2.39 -0.02 0.96 16 27 H 0.05 1.28 7.35 -2.39 -0.02 1.26 16 28 H 0.05 2.01 5.57 -2.39 -0.01 1.99 16 29 H 0.10 2.86 6.83 -2.39 -0.02 2.84 16 30 H 0.05 1.97 7.39 -2.39 -0.02 1.95 16 31 H 0.07 2.67 8.14 -2.38 -0.02 2.65 16 32 H 0.02 0.71 7.63 -2.39 -0.02 0.69 16 33 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.08 1.85 8.14 -2.38 -0.02 1.84 16 35 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.07 1.72 7.88 -2.39 -0.02 1.71 16 37 H 0.07 1.84 6.56 -2.39 -0.02 1.82 16 38 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.05 1.64 6.72 -2.39 -0.02 1.63 16 40 H -0.01 -0.43 6.23 -2.39 -0.01 -0.45 16 41 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 42 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -62.80 320.68 -0.78 -63.57 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 0.96 Total: 12.77 kcal Atomic # 6 Polarization: -29.41 SS G_CDS: 5.50 Total: -23.91 kcal Atomic # 7 Polarization: -90.90 SS G_CDS: -9.26 Total: -100.17 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.73 kcal Total: -62.80 -0.78 -63.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695834961.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.577 kcal (2) G-P(sol) polarization free energy of solvation -62.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds