Wall clock time and date at job start Mon Mar 30 2020 03:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46895 * 109.46905 * 2 1 4 4 C 1.48562 * 111.00142 * 74.58056 * 3 2 1 5 5 C 1.54377 * 104.59407 * 159.03785 * 4 3 2 6 6 C 1.54266 * 105.06190 * 336.14868 * 5 4 3 7 7 H 1.08996 * 110.32023 * 118.89709 * 6 5 4 8 8 C 1.52993 * 110.32247 * 241.00140 * 6 5 4 9 9 N 1.46902 * 109.47513 * 293.54322 * 8 6 5 10 10 C 1.46901 * 111.00341 * 179.97438 * 9 8 6 11 11 H 1.09005 * 109.46570 * 35.00464 * 10 9 8 12 12 C 1.52994 * 109.47462 * 275.00551 * 10 9 8 13 13 C 1.53004 * 109.46952 * 155.00012 * 10 9 8 14 14 C 1.50702 * 109.47210 * 295.00340 * 13 10 9 15 15 H 1.07997 * 119.99929 * 0.02562 * 14 13 10 16 16 C 1.37882 * 119.99826 * 180.02562 * 14 13 10 17 17 N 1.31515 * 119.99947 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99710 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47328 * 60.00238 * 18 16 14 20 20 H 1.48504 * 109.46809 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47406 * 299.99646 * 18 16 14 22 22 C 1.48562 * 110.99842 * 190.00219 * 3 2 1 23 23 H 1.08997 * 109.47480 * 59.99952 * 1 2 3 24 24 H 1.09005 * 109.47204 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47120 * 299.99777 * 1 2 3 26 26 H 1.09001 * 109.46777 * 239.99867 * 2 1 3 27 27 H 1.09000 * 109.47051 * 119.99748 * 2 1 3 28 28 H 1.09000 * 110.41111 * 40.26361 * 4 3 2 29 29 H 1.08989 * 110.41482 * 277.81625 * 4 3 2 30 30 H 1.09005 * 110.32720 * 217.25400 * 5 4 3 31 31 H 1.09003 * 110.32570 * 95.04509 * 5 4 3 32 32 H 1.08994 * 109.47541 * 53.54978 * 8 6 5 33 33 H 1.09004 * 109.47209 * 173.54817 * 8 6 5 34 34 H 1.00900 * 111.00260 * 303.95890 * 9 8 6 35 35 H 1.08996 * 109.47394 * 180.02562 * 12 10 9 36 36 H 1.09008 * 109.46691 * 299.99754 * 12 10 9 37 37 H 1.09004 * 109.47374 * 59.99664 * 12 10 9 38 38 H 1.08997 * 109.46887 * 55.00658 * 13 10 9 39 39 H 1.08997 * 109.46975 * 175.00119 * 13 10 9 40 40 H 0.96994 * 120.00193 * 179.97438 * 17 16 14 41 41 H 1.08998 * 110.41528 * 82.17831 * 22 3 2 42 42 H 1.08997 * 110.50874 * 319.78619 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8494 2.0099 1.3370 5 6 2.8500 3.1854 1.3472 6 6 3.9260 2.8050 0.3092 7 1 3.9555 3.5424 -0.4930 8 6 5.2966 2.6959 0.9801 9 7 5.7189 4.0221 1.4500 10 6 7.0337 3.9557 2.1018 11 1 7.6510 3.2109 1.5994 12 6 6.8559 3.5645 3.5701 13 6 7.7144 5.3234 2.0171 14 6 8.0005 5.6537 0.5749 15 1 7.7241 4.9580 -0.2035 16 6 8.6153 6.8441 0.2491 17 7 8.9515 7.6915 1.1971 18 14 8.9705 7.2532 -1.5385 19 1 7.6968 7.2868 -2.3012 20 1 9.6311 8.5807 -1.6206 21 1 9.8655 6.2179 -2.1148 22 6 3.4848 1.4316 -0.2409 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.0933 1.2962 2.1240 29 1 0.8304 2.3770 1.4581 30 1 3.2982 3.2926 2.3350 31 1 2.3515 4.1095 1.0545 32 1 5.2330 2.0134 1.8276 33 1 6.0235 2.3165 0.2619 34 1 5.7233 4.6894 0.6932 35 1 7.8315 3.5157 4.0538 36 1 6.2386 4.3094 4.0724 37 1 6.3709 2.5901 3.6304 38 1 7.0574 6.0830 2.4405 39 1 8.6495 5.2990 2.5767 40 1 9.3842 8.5288 0.9680 41 1 3.6971 1.3634 -1.3078 42 1 3.9862 0.6276 0.2978 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695836457.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:49 Heat of formation + Delta-G solvation = -18.675147 kcal Electronic energy + Delta-G solvation = -17627.398268 eV Core-core repulsion = 15027.200289 eV Total energy + Delta-G solvation = -2600.197979 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.20005 -36.58686 -33.97184 -32.51447 -30.71428 -29.10412 -28.08316 -27.38071 -23.94879 -22.96167 -22.61357 -20.89633 -19.68093 -19.22432 -16.37282 -16.22879 -15.61613 -14.95496 -14.70287 -14.60598 -14.19445 -13.78164 -13.22472 -13.00714 -12.64182 -12.57195 -11.88573 -11.83909 -11.67536 -11.53088 -11.46995 -11.25321 -11.17318 -11.03089 -10.80271 -10.73302 -10.51906 -10.38445 -10.20323 -10.11001 -9.20821 -9.06345 -8.55531 -8.38668 -7.61081 -6.01997 -4.05227 3.31632 3.36630 3.38528 3.92823 4.43824 4.59649 4.75318 4.95731 5.02059 5.17068 5.22097 5.32117 5.33587 5.39674 5.54605 5.64365 5.70274 5.75178 5.79342 5.81595 5.91714 6.00019 6.04327 6.15836 6.17678 6.26734 6.31266 6.45092 6.49767 6.57412 6.85335 6.93766 6.96495 6.99097 7.54566 7.64547 7.97591 8.08472 8.30439 8.38809 9.00788 9.58926 11.08905 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.031262 B = 0.004702 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.444205 B = 5953.769724 C = 6505.290448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.038 3.962 3 N -0.513 5.513 4 C 0.031 3.969 5 C -0.108 4.108 6 C -0.088 4.088 7 H 0.078 0.922 8 C 0.068 3.932 9 N -0.681 5.681 10 C 0.087 3.913 11 H 0.027 0.973 12 C -0.134 4.134 13 C 0.021 3.979 14 C -0.524 4.524 15 H 0.051 0.949 16 C 0.061 3.939 17 N -0.892 5.892 18 Si 0.890 3.110 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.278 1.278 22 C 0.038 3.962 23 H 0.062 0.938 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.071 0.929 27 H 0.034 0.966 28 H 0.039 0.961 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.022 0.978 34 H 0.354 0.646 35 H 0.047 0.953 36 H 0.054 0.946 37 H 0.034 0.966 38 H 0.026 0.974 39 H 0.020 0.980 40 H 0.261 0.739 41 H 0.078 0.922 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.137 -13.428 -0.436 18.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.090 4.090 3 N -0.237 5.237 4 C -0.097 4.097 5 C -0.146 4.146 6 C -0.108 4.108 7 H 0.097 0.903 8 C -0.063 4.063 9 N -0.315 5.315 10 C -0.022 4.022 11 H 0.045 0.955 12 C -0.192 4.192 13 C -0.016 4.016 14 C -0.563 4.563 15 H 0.069 0.931 16 C -0.141 4.141 17 N -0.530 5.530 18 Si 0.718 3.282 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.204 1.204 22 C -0.091 4.091 23 H 0.081 0.919 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.040 0.960 34 H 0.175 0.825 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.053 0.947 38 H 0.044 0.956 39 H 0.038 0.962 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -13.704 -13.018 -0.232 18.902 hybrid contribution 1.329 -0.363 -1.162 1.802 sum -12.375 -13.380 -1.394 18.279 Atomic orbital electron populations 1.21720 0.94865 1.01174 1.02482 1.22227 0.96354 0.89775 1.00645 1.65399 1.14198 1.16313 1.27799 1.23197 1.00314 0.96648 0.89565 1.22247 0.94951 0.97233 1.00216 1.21877 0.94888 0.96054 0.97967 0.90311 1.21974 0.94025 0.93066 0.97198 1.60532 1.29352 1.06782 1.34800 1.21603 0.88119 0.99884 0.92612 0.95474 1.21787 1.00291 0.99709 0.97427 1.19266 0.95355 0.90132 0.96849 1.21137 1.39377 1.03131 0.92619 0.93096 1.24987 0.95658 0.96352 0.97088 1.69948 1.41191 1.09781 1.32113 0.86694 0.78560 0.77508 0.85455 1.20167 1.21272 1.20395 1.23119 0.87745 0.97158 1.01030 0.91924 0.92608 0.92803 0.91089 0.94808 0.94223 0.90579 0.90085 0.91326 0.92162 0.95993 0.82480 0.93415 0.92668 0.94671 0.95603 0.96163 0.92891 0.90372 0.93899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 10.03 37.16 0.37 -0.86 16 2 C 0.04 0.38 5.55 -3.83 -0.02 0.36 16 3 N -0.51 -6.10 5.34 -229.98 -1.23 -7.33 16 4 C 0.03 0.35 5.91 -2.18 -0.01 0.34 16 5 C -0.11 -1.43 6.47 -25.35 -0.16 -1.59 16 6 C -0.09 -1.23 3.24 -89.24 -0.29 -1.51 16 7 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 8 C 0.07 1.06 4.57 -3.83 -0.02 1.05 16 9 N -0.68 -12.87 6.04 -106.73 -0.64 -13.51 16 10 C 0.09 1.81 2.59 -67.71 -0.18 1.64 16 11 H 0.03 0.58 7.80 -51.93 -0.41 0.18 16 12 C -0.13 -2.42 9.41 37.15 0.35 -2.07 16 13 C 0.02 0.54 4.57 -27.88 -0.13 0.42 16 14 C -0.52 -14.41 8.12 -34.44 -0.28 -14.69 16 15 H 0.05 1.36 7.49 -52.49 -0.39 0.97 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -26.55 13.29 55.43 0.74 -25.82 16 18 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 C 0.04 0.46 6.00 -2.18 -0.01 0.45 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.46 7.47 -51.93 -0.39 0.08 16 26 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 27 H 0.03 0.33 7.77 -51.93 -0.40 -0.07 16 28 H 0.04 0.45 7.75 -51.93 -0.40 0.05 16 29 H 0.08 0.83 7.85 -51.93 -0.41 0.42 16 30 H 0.08 1.14 7.64 -51.93 -0.40 0.75 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.92 7.43 -51.93 -0.39 0.54 16 33 H 0.02 0.36 8.06 -51.93 -0.42 -0.06 16 34 H 0.35 7.36 7.21 -39.29 -0.28 7.08 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.05 1.01 8.14 -51.92 -0.42 0.58 16 37 H 0.03 0.56 7.45 -51.93 -0.39 0.18 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.04 0.51 7.72 -51.93 -0.40 0.11 16 LS Contribution 328.75 15.07 4.95 4.95 Total: -1.00 -28.51 328.75 -9.71 -38.22 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -8.03 Total: 1.92 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: -0.48 Total: -14.85 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: -1.14 Total: -46.66 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.51 -9.71 -38.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695836457.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.540 kcal (2) G-P(sol) polarization free energy of solvation -28.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds