Wall clock time and date at job start Mon Mar 30 2020 03:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46895 * 109.46905 * 2 1 4 4 C 1.48562 * 111.00142 * 74.58056 * 3 2 1 5 5 C 1.54377 * 104.59407 * 159.03785 * 4 3 2 6 6 C 1.54266 * 105.06190 * 336.14868 * 5 4 3 7 7 H 1.08996 * 110.32023 * 118.89709 * 6 5 4 8 8 C 1.52993 * 110.32247 * 241.00140 * 6 5 4 9 9 N 1.46902 * 109.47513 * 293.54322 * 8 6 5 10 10 C 1.46901 * 111.00341 * 179.97438 * 9 8 6 11 11 H 1.09005 * 109.46570 * 35.00464 * 10 9 8 12 12 C 1.52994 * 109.47462 * 275.00551 * 10 9 8 13 13 C 1.53004 * 109.46952 * 155.00012 * 10 9 8 14 14 C 1.50702 * 109.47210 * 295.00340 * 13 10 9 15 15 H 1.07997 * 119.99929 * 0.02562 * 14 13 10 16 16 C 1.37882 * 119.99826 * 180.02562 * 14 13 10 17 17 N 1.31515 * 119.99947 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99710 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47328 * 60.00238 * 18 16 14 20 20 H 1.48504 * 109.46809 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47406 * 299.99646 * 18 16 14 22 22 C 1.48562 * 110.99842 * 190.00219 * 3 2 1 23 23 H 1.08997 * 109.47480 * 59.99952 * 1 2 3 24 24 H 1.09005 * 109.47204 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47120 * 299.99777 * 1 2 3 26 26 H 1.09001 * 109.46777 * 239.99867 * 2 1 3 27 27 H 1.09000 * 109.47051 * 119.99748 * 2 1 3 28 28 H 1.09000 * 110.41111 * 40.26361 * 4 3 2 29 29 H 1.08989 * 110.41482 * 277.81625 * 4 3 2 30 30 H 1.09005 * 110.32720 * 217.25400 * 5 4 3 31 31 H 1.09003 * 110.32570 * 95.04509 * 5 4 3 32 32 H 1.08994 * 109.47541 * 53.54978 * 8 6 5 33 33 H 1.09004 * 109.47209 * 173.54817 * 8 6 5 34 34 H 1.00900 * 111.00260 * 303.95890 * 9 8 6 35 35 H 1.08996 * 109.47394 * 180.02562 * 12 10 9 36 36 H 1.09008 * 109.46691 * 299.99754 * 12 10 9 37 37 H 1.09004 * 109.47374 * 59.99664 * 12 10 9 38 38 H 1.08997 * 109.46887 * 55.00658 * 13 10 9 39 39 H 1.08997 * 109.46975 * 175.00119 * 13 10 9 40 40 H 0.96994 * 120.00193 * 179.97438 * 17 16 14 41 41 H 1.08998 * 110.41528 * 82.17831 * 22 3 2 42 42 H 1.08997 * 110.50874 * 319.78619 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8494 2.0099 1.3370 5 6 2.8500 3.1854 1.3472 6 6 3.9260 2.8050 0.3092 7 1 3.9555 3.5424 -0.4930 8 6 5.2966 2.6959 0.9801 9 7 5.7189 4.0221 1.4500 10 6 7.0337 3.9557 2.1018 11 1 7.6510 3.2109 1.5994 12 6 6.8559 3.5645 3.5701 13 6 7.7144 5.3234 2.0171 14 6 8.0005 5.6537 0.5749 15 1 7.7241 4.9580 -0.2035 16 6 8.6153 6.8441 0.2491 17 7 8.9515 7.6915 1.1971 18 14 8.9705 7.2532 -1.5385 19 1 7.6968 7.2868 -2.3012 20 1 9.6311 8.5807 -1.6206 21 1 9.8655 6.2179 -2.1148 22 6 3.4848 1.4316 -0.2409 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.0933 1.2962 2.1240 29 1 0.8304 2.3770 1.4581 30 1 3.2982 3.2926 2.3350 31 1 2.3515 4.1095 1.0545 32 1 5.2330 2.0134 1.8276 33 1 6.0235 2.3165 0.2619 34 1 5.7233 4.6894 0.6932 35 1 7.8315 3.5157 4.0538 36 1 6.2386 4.3094 4.0724 37 1 6.3709 2.5901 3.6304 38 1 7.0574 6.0830 2.4405 39 1 8.6495 5.2990 2.5767 40 1 9.3842 8.5288 0.9680 41 1 3.6971 1.3634 -1.3078 42 1 3.9862 0.6276 0.2978 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695836457.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:49 Heat of formation + Delta-G solvation = -37.105004 kcal Electronic energy + Delta-G solvation = -17628.197446 eV Core-core repulsion = 15027.200289 eV Total energy + Delta-G solvation = -2600.997157 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.21801 -38.12575 -35.32461 -34.30863 -32.03552 -30.04353 -29.40306 -29.17030 -25.49291 -24.38538 -23.77969 -21.83906 -21.04572 -20.63963 -18.51084 -17.27870 -16.79375 -16.47858 -16.26307 -15.77629 -15.49879 -14.87815 -14.79657 -13.99880 -13.94148 -13.61135 -13.49552 -13.38644 -13.19736 -12.90625 -12.72278 -12.56406 -12.45496 -12.37849 -12.22645 -12.17931 -11.85972 -11.75329 -11.55533 -11.36501 -11.14309 -10.98198 -10.56893 -9.44172 -9.15743 -8.19230 -6.29919 1.40017 1.42013 1.49705 2.40461 3.01972 3.12922 3.39948 3.79640 3.90930 3.98952 4.24239 4.27849 4.34530 4.36906 4.54269 4.58869 4.63815 4.64851 4.70593 4.74743 4.77500 4.81075 4.97234 5.00131 5.01738 5.11531 5.15129 5.22179 5.32207 5.34195 5.35787 5.42725 5.50482 5.56825 5.84399 5.91583 6.13698 6.21140 6.43678 6.65863 6.85277 7.38919 8.92258 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.031262 B = 0.004702 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.444205 B = 5953.769724 C = 6505.290448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.036 3.964 3 N -0.524 5.524 4 C 0.037 3.963 5 C -0.106 4.106 6 C -0.085 4.085 7 H 0.065 0.935 8 C 0.073 3.927 9 N -0.681 5.681 10 C 0.095 3.905 11 H 0.022 0.978 12 C -0.126 4.126 13 C 0.029 3.971 14 C -0.535 4.535 15 H 0.057 0.943 16 C 0.005 3.995 17 N -0.931 5.931 18 Si 0.960 3.040 19 H -0.266 1.266 20 H -0.285 1.285 21 H -0.270 1.270 22 C 0.043 3.957 23 H 0.056 0.944 24 H 0.072 0.928 25 H 0.051 0.949 26 H 0.076 0.924 27 H 0.038 0.962 28 H 0.046 0.954 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.018 0.982 34 H 0.342 0.658 35 H 0.051 0.949 36 H 0.049 0.951 37 H 0.060 0.940 38 H -0.003 1.003 39 H -0.007 1.007 40 H 0.263 0.737 41 H 0.081 0.919 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.158 -15.032 -1.338 20.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.092 4.092 3 N -0.248 5.248 4 C -0.091 4.091 5 C -0.144 4.144 6 C -0.105 4.105 7 H 0.084 0.916 8 C -0.057 4.057 9 N -0.313 5.313 10 C -0.015 4.015 11 H 0.040 0.960 12 C -0.184 4.184 13 C -0.009 4.009 14 C -0.573 4.573 15 H 0.075 0.925 16 C -0.194 4.194 17 N -0.571 5.571 18 Si 0.785 3.215 19 H -0.191 1.191 20 H -0.210 1.210 21 H -0.195 1.195 22 C -0.085 4.085 23 H 0.075 0.925 24 H 0.091 0.909 25 H 0.071 0.929 26 H 0.095 0.905 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.036 0.964 34 H 0.161 0.839 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.016 0.984 39 H 0.012 0.988 40 H 0.072 0.928 41 H 0.100 0.900 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -14.740 -14.650 -1.130 20.812 hybrid contribution 1.632 0.122 -0.853 1.845 sum -13.108 -14.528 -1.983 19.667 Atomic orbital electron populations 1.21695 0.93872 1.02186 1.02095 1.22312 0.97162 0.88601 1.01111 1.65415 1.13733 1.17786 1.27902 1.23147 1.00194 0.95998 0.89759 1.22189 0.95114 0.97824 0.99321 1.21801 0.94024 0.97012 0.97658 0.91600 1.22002 0.94830 0.91277 0.97544 1.60571 1.27903 1.08307 1.34503 1.21423 0.88629 0.96650 0.94769 0.96001 1.21694 1.00773 1.00807 0.95118 1.19122 0.93939 0.92254 0.95562 1.21494 1.38943 1.03316 0.93585 0.92519 1.25892 0.95487 0.96294 1.01690 1.70085 1.42193 1.10311 1.34483 0.85576 0.78738 0.77297 0.79884 1.19095 1.21035 1.19536 1.23044 0.88252 0.96000 1.01204 0.92523 0.90943 0.92944 0.90522 0.94408 0.93598 0.89754 0.91034 0.91968 0.91126 0.96417 0.83929 0.93037 0.93164 0.92112 0.98439 0.98828 0.92815 0.90043 0.93254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 10.03 71.98 0.72 -1.35 16 2 C 0.04 0.63 5.55 86.31 0.48 1.11 16 3 N -0.52 -11.37 5.34 -881.51 -4.70 -16.08 16 4 C 0.04 0.78 5.91 86.45 0.51 1.29 16 5 C -0.11 -2.68 6.47 31.49 0.20 -2.48 16 6 C -0.09 -2.27 3.24 -9.90 -0.03 -2.31 16 7 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 8 C 0.07 2.21 4.57 86.30 0.39 2.61 16 9 N -0.68 -25.55 6.04 -491.57 -2.97 -28.52 16 10 C 0.10 3.95 2.59 44.91 0.12 4.06 16 11 H 0.02 0.93 7.80 -2.38 -0.02 0.91 16 12 C -0.13 -4.42 9.41 71.98 0.68 -3.75 16 13 C 0.03 1.50 4.57 29.85 0.14 1.64 16 14 C -0.54 -29.77 8.12 25.60 0.21 -29.57 16 15 H 0.06 3.02 7.49 -2.91 -0.02 3.00 16 16 C 0.00 0.26 5.46 84.66 0.46 0.72 16 17 N -0.93 -56.51 13.29 21.45 0.28 -56.23 16 18 Si 0.96 44.06 29.54 68.60 2.03 46.09 16 19 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 20 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 22 C 0.04 0.98 6.00 86.45 0.52 1.50 16 23 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 25 H 0.05 0.78 7.47 -2.39 -0.02 0.76 16 26 H 0.08 1.24 8.08 -2.39 -0.02 1.22 16 27 H 0.04 0.63 7.77 -2.39 -0.02 0.61 16 28 H 0.05 0.92 7.75 -2.39 -0.02 0.91 16 29 H 0.08 1.66 7.85 -2.39 -0.02 1.64 16 30 H 0.07 1.94 7.64 -2.38 -0.02 1.92 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.07 2.00 7.43 -2.39 -0.02 1.99 16 33 H 0.02 0.56 8.06 -2.38 -0.02 0.54 16 34 H 0.34 14.31 7.21 -89.69 -0.65 13.67 16 35 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.06 1.82 7.45 -2.39 -0.02 1.80 16 38 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 39 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 40 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 41 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.05 1.06 7.72 -2.39 -0.02 1.04 16 Total: -1.00 -60.82 328.75 -0.66 -61.48 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.30 Total: 19.78 kcal Atomic # 6 Polarization: -30.92 SS G_CDS: 4.40 Total: -26.52 kcal Atomic # 7 Polarization: -93.44 SS G_CDS: -7.39 Total: -100.82 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -60.82 -0.66 -61.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695836457.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.378 kcal (2) G-P(sol) polarization free energy of solvation -60.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds