Wall clock time and date at job start Mon Mar 30 2020 03:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46894 * 109.47515 * 2 1 4 4 C 1.48542 * 110.99968 * 52.60297 * 3 2 1 5 5 C 1.54931 * 103.22694 * 159.72119 * 4 3 2 6 6 C 1.54599 * 102.92476 * 322.58603 * 5 4 3 7 7 H 1.08997 * 110.30774 * 263.03983 * 6 5 4 8 8 C 1.53000 * 110.30548 * 140.87184 * 6 5 4 9 9 N 1.46900 * 109.47130 * 69.28951 * 8 6 5 10 10 C 1.46904 * 111.00153 * 179.97438 * 9 8 6 11 11 H 1.09001 * 109.46762 * 324.99744 * 10 9 8 12 12 C 1.52997 * 109.47202 * 84.99540 * 10 9 8 13 13 C 1.52998 * 109.47321 * 204.99880 * 10 9 8 14 14 C 1.50703 * 109.47051 * 64.99831 * 13 10 9 15 15 H 1.08001 * 120.00041 * 359.97438 * 14 13 10 16 16 C 1.37876 * 120.00200 * 180.02562 * 14 13 10 17 17 N 1.31507 * 120.00483 * 180.02562 * 16 14 13 18 18 Si 1.86807 * 119.99719 * 359.97438 * 16 14 13 19 19 H 1.48495 * 109.47034 * 89.99978 * 18 16 14 20 20 H 1.48498 * 109.46887 * 210.00276 * 18 16 14 21 21 H 1.48502 * 109.47161 * 330.00131 * 18 16 14 22 22 C 1.47903 * 111.00089 * 169.99840 * 3 2 1 23 23 H 1.09002 * 109.47153 * 59.99762 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99953 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47153 * 120.00238 * 2 1 3 27 27 H 1.08998 * 109.47533 * 239.99867 * 2 1 3 28 28 H 1.08999 * 110.66829 * 278.16218 * 4 3 2 29 29 H 1.09005 * 110.66356 * 41.28669 * 4 3 2 30 30 H 1.08997 * 110.72506 * 204.22832 * 5 4 3 31 31 H 1.09001 * 110.72265 * 80.94824 * 5 4 3 32 32 H 1.09007 * 109.46911 * 189.28392 * 8 6 5 33 33 H 1.09000 * 109.47667 * 309.28696 * 8 6 5 34 34 H 1.00895 * 110.99975 * 303.95043 * 9 8 6 35 35 H 1.09002 * 109.47404 * 300.00493 * 12 10 9 36 36 H 1.09003 * 109.46592 * 59.99846 * 12 10 9 37 37 H 1.08995 * 109.47474 * 179.97438 * 12 10 9 38 38 H 1.08998 * 109.47248 * 185.00067 * 13 10 9 39 39 H 1.09000 * 109.46855 * 305.00471 * 13 10 9 40 40 H 0.96997 * 120.00307 * 179.97438 * 17 16 14 41 41 H 1.08994 * 109.91868 * 333.51091 * 22 3 2 42 42 H 1.09000 * 109.91476 * 94.61275 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.4031 2.1676 1.1017 5 6 2.3782 3.3584 1.2793 6 6 3.7624 2.7089 1.0513 7 1 4.2236 2.4561 2.0060 8 6 4.6672 3.6527 0.2565 9 7 5.0235 4.8078 1.0911 10 6 5.8943 5.7375 0.3594 11 1 6.5569 5.1739 -0.2974 12 6 5.0362 6.6892 -0.4766 13 6 6.7293 6.5451 1.3551 14 6 7.6634 5.6210 2.0931 15 1 7.6614 4.5634 1.8742 16 6 8.5199 6.1255 3.0486 17 7 9.3354 5.3193 3.6923 18 14 8.5229 7.9547 3.4278 19 1 7.5468 8.2373 4.5106 20 1 9.8807 8.3673 3.8651 21 1 8.1435 8.7135 2.2089 22 6 3.4784 1.4313 0.2398 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 0.4126 2.5207 0.8152 29 1 1.3517 1.5730 2.0139 30 1 2.3060 3.7691 2.2864 31 1 2.1859 4.1290 0.5328 32 1 5.5739 3.1241 -0.0384 33 1 4.1411 3.9963 -0.6341 34 1 4.1974 5.2771 1.4306 35 1 4.4413 6.1138 -1.1860 36 1 4.3736 7.2527 0.1803 37 1 5.6823 7.3792 -1.0192 38 1 7.3096 7.2954 0.8182 39 1 6.0682 7.0383 2.0676 40 1 9.9381 5.6743 4.3642 41 1 3.7895 0.5542 0.8072 42 1 4.0101 1.4660 -0.7111 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695836460.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:51 Heat of formation + Delta-G solvation = -9.505174 kcal Electronic energy + Delta-G solvation = -17645.830513 eV Core-core repulsion = 15046.030174 eV Total energy + Delta-G solvation = -2599.800339 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.32102 -36.77109 -34.03076 -32.37757 -30.76066 -29.35111 -28.26917 -27.53562 -23.84146 -23.24560 -22.38555 -20.66957 -19.98390 -19.42519 -16.54206 -16.13438 -15.95588 -15.07183 -14.53013 -14.44283 -14.08108 -13.69897 -13.16140 -13.09848 -12.84920 -12.35676 -12.33976 -12.24762 -11.84479 -11.72808 -11.62571 -11.45649 -11.33986 -11.13494 -10.83265 -10.68263 -10.46873 -10.39715 -10.06916 -9.70002 -9.52765 -8.98576 -8.49218 -8.37998 -7.54228 -5.86502 -3.79877 3.39583 3.46557 3.49478 3.92091 4.52147 4.58762 4.71154 4.79936 4.97635 5.02937 5.21113 5.28367 5.32119 5.46356 5.48776 5.60943 5.63242 5.66408 5.68605 5.77346 5.82372 5.90339 5.92009 5.95452 6.00861 6.07151 6.09995 6.28628 6.39577 6.48187 6.54565 6.84807 6.88764 6.97355 7.22733 7.36912 7.87733 7.97196 8.16930 8.77624 9.25222 9.76914 11.27771 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.038932 B = 0.004500 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.036174 B = 6221.044297 C = 6515.295797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.041 3.959 3 N -0.519 5.519 4 C 0.035 3.965 5 C -0.120 4.120 6 C -0.096 4.096 7 H 0.087 0.913 8 C 0.073 3.927 9 N -0.663 5.663 10 C 0.098 3.902 11 H 0.069 0.931 12 C -0.182 4.182 13 C -0.004 4.004 14 C -0.487 4.487 15 H 0.076 0.924 16 C 0.059 3.941 17 N -0.911 5.911 18 Si 0.875 3.125 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.269 1.269 22 C 0.041 3.959 23 H 0.062 0.938 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.033 0.967 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.022 0.978 34 H 0.329 0.671 35 H 0.041 0.959 36 H 0.049 0.951 37 H 0.055 0.945 38 H 0.016 0.984 39 H 0.011 0.989 40 H 0.259 0.741 41 H 0.044 0.956 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.891 -6.766 -7.514 19.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.088 4.088 3 N -0.244 5.244 4 C -0.093 4.093 5 C -0.158 4.158 6 C -0.115 4.115 7 H 0.105 0.895 8 C -0.057 4.057 9 N -0.293 5.293 10 C -0.012 4.012 11 H 0.087 0.913 12 C -0.242 4.242 13 C -0.042 4.042 14 C -0.525 4.525 15 H 0.094 0.906 16 C -0.140 4.140 17 N -0.551 5.551 18 Si 0.703 3.297 19 H -0.206 1.206 20 H -0.217 1.217 21 H -0.193 1.193 22 C -0.087 4.087 23 H 0.081 0.919 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.052 0.948 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.040 0.960 34 H 0.146 0.854 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.034 0.966 39 H 0.029 0.971 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.352 -6.892 -7.586 19.299 hybrid contribution -0.339 0.942 0.511 1.124 sum -16.691 -5.950 -7.076 19.080 Atomic orbital electron populations 1.21845 0.95039 1.01614 1.02441 1.22259 0.95865 0.89856 1.00791 1.64838 1.04805 1.11421 1.43326 1.23222 0.98636 0.94861 0.92532 1.22574 0.93999 0.97243 1.01981 1.22035 0.95487 0.94238 0.99753 0.89471 1.21967 0.97686 0.92472 0.93542 1.60472 1.20601 1.09657 1.38546 1.21546 0.93358 0.92009 0.94239 0.91268 1.22590 1.00590 1.00611 1.00360 1.19608 0.94812 0.95433 0.94317 1.21050 1.16814 0.95875 1.18761 0.90594 1.25020 0.95674 0.97098 0.96202 1.69912 1.24288 1.34649 1.26295 0.86861 0.76909 0.87063 0.78826 1.20614 1.21749 1.19344 1.22917 0.88462 0.97293 1.00056 0.91910 0.92600 0.92393 0.94827 0.90796 0.90374 0.93892 0.90760 0.91089 0.91311 0.95990 0.85365 0.93960 0.93150 0.92552 0.96634 0.97120 0.93148 0.93741 0.90247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.57 37.16 0.36 -0.88 16 2 C 0.04 0.40 5.75 -3.83 -0.02 0.37 16 3 N -0.52 -6.00 5.40 -230.45 -1.24 -7.25 16 4 C 0.04 0.38 5.10 -1.90 -0.01 0.37 16 5 C -0.12 -1.44 5.89 -24.87 -0.15 -1.58 16 6 C -0.10 -1.31 3.23 -89.26 -0.29 -1.59 16 7 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 8 C 0.07 1.14 4.64 -3.82 -0.02 1.12 16 9 N -0.66 -12.20 5.96 -106.72 -0.64 -12.83 16 10 C 0.10 1.93 2.53 -67.71 -0.17 1.76 16 11 H 0.07 1.42 7.80 -51.93 -0.40 1.02 16 12 C -0.18 -2.93 9.16 37.16 0.34 -2.59 16 13 C 0.00 -0.10 3.72 -27.88 -0.10 -0.20 16 14 C -0.49 -14.03 9.39 -34.44 -0.32 -14.36 16 15 H 0.08 2.39 7.99 -52.49 -0.42 1.97 16 16 C 0.06 1.76 5.47 -17.82 -0.10 1.66 16 17 N -0.91 -28.80 13.96 55.43 0.77 -28.03 16 18 Si 0.88 22.25 27.47 -169.99 -4.67 17.58 16 19 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 21 H -0.27 -6.54 6.54 56.52 0.37 -6.17 16 22 C 0.04 0.50 6.35 -2.75 -0.02 0.49 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.45 6.79 -51.93 -0.35 0.10 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.03 0.33 7.81 -51.93 -0.41 -0.08 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.08 0.78 7.66 -51.93 -0.40 0.38 16 29 H 0.04 0.46 8.00 -51.93 -0.42 0.04 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.86 7.76 -51.93 -0.40 0.46 16 32 H 0.07 1.15 8.06 -51.93 -0.42 0.73 16 33 H 0.02 0.33 7.29 -51.93 -0.38 -0.05 16 34 H 0.33 5.56 7.79 -39.29 -0.31 5.26 16 35 H 0.04 0.61 7.45 -51.93 -0.39 0.22 16 36 H 0.05 0.77 8.13 -51.93 -0.42 0.35 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 39 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 40 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 41 H 0.04 0.53 7.57 -51.93 -0.39 0.14 16 42 H 0.08 0.98 7.69 -51.93 -0.40 0.58 16 LS Contribution 324.06 15.07 4.88 4.88 Total: -1.00 -30.97 324.06 -9.37 -40.34 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -7.97 Total: 0.73 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -0.50 Total: -15.43 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: -1.11 Total: -48.11 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.67 Total: 17.58 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.97 -9.37 -40.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695836460.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.831 kcal (2) G-P(sol) polarization free energy of solvation -30.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds