Wall clock time and date at job start Mon Mar 30 2020 03:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46894 * 109.47515 * 2 1 4 4 C 1.48542 * 110.99968 * 52.60297 * 3 2 1 5 5 C 1.54931 * 103.22694 * 159.72119 * 4 3 2 6 6 C 1.54599 * 102.92476 * 322.58603 * 5 4 3 7 7 H 1.08997 * 110.30774 * 263.03983 * 6 5 4 8 8 C 1.53000 * 110.30548 * 140.87184 * 6 5 4 9 9 N 1.46900 * 109.47130 * 69.28951 * 8 6 5 10 10 C 1.46904 * 111.00153 * 179.97438 * 9 8 6 11 11 H 1.09001 * 109.46762 * 324.99744 * 10 9 8 12 12 C 1.52997 * 109.47202 * 84.99540 * 10 9 8 13 13 C 1.52998 * 109.47321 * 204.99880 * 10 9 8 14 14 C 1.50703 * 109.47051 * 64.99831 * 13 10 9 15 15 H 1.08001 * 120.00041 * 359.97438 * 14 13 10 16 16 C 1.37876 * 120.00200 * 180.02562 * 14 13 10 17 17 N 1.31507 * 120.00483 * 180.02562 * 16 14 13 18 18 Si 1.86807 * 119.99719 * 359.97438 * 16 14 13 19 19 H 1.48495 * 109.47034 * 89.99978 * 18 16 14 20 20 H 1.48498 * 109.46887 * 210.00276 * 18 16 14 21 21 H 1.48502 * 109.47161 * 330.00131 * 18 16 14 22 22 C 1.47903 * 111.00089 * 169.99840 * 3 2 1 23 23 H 1.09002 * 109.47153 * 59.99762 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99953 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47153 * 120.00238 * 2 1 3 27 27 H 1.08998 * 109.47533 * 239.99867 * 2 1 3 28 28 H 1.08999 * 110.66829 * 278.16218 * 4 3 2 29 29 H 1.09005 * 110.66356 * 41.28669 * 4 3 2 30 30 H 1.08997 * 110.72506 * 204.22832 * 5 4 3 31 31 H 1.09001 * 110.72265 * 80.94824 * 5 4 3 32 32 H 1.09007 * 109.46911 * 189.28392 * 8 6 5 33 33 H 1.09000 * 109.47667 * 309.28696 * 8 6 5 34 34 H 1.00895 * 110.99975 * 303.95043 * 9 8 6 35 35 H 1.09002 * 109.47404 * 300.00493 * 12 10 9 36 36 H 1.09003 * 109.46592 * 59.99846 * 12 10 9 37 37 H 1.08995 * 109.47474 * 179.97438 * 12 10 9 38 38 H 1.08998 * 109.47248 * 185.00067 * 13 10 9 39 39 H 1.09000 * 109.46855 * 305.00471 * 13 10 9 40 40 H 0.96997 * 120.00307 * 179.97438 * 17 16 14 41 41 H 1.08994 * 109.91868 * 333.51091 * 22 3 2 42 42 H 1.09000 * 109.91476 * 94.61275 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.4031 2.1676 1.1017 5 6 2.3782 3.3584 1.2793 6 6 3.7624 2.7089 1.0513 7 1 4.2236 2.4561 2.0060 8 6 4.6672 3.6527 0.2565 9 7 5.0235 4.8078 1.0911 10 6 5.8943 5.7375 0.3594 11 1 6.5569 5.1739 -0.2974 12 6 5.0362 6.6892 -0.4766 13 6 6.7293 6.5451 1.3551 14 6 7.6634 5.6210 2.0931 15 1 7.6614 4.5634 1.8742 16 6 8.5199 6.1255 3.0486 17 7 9.3354 5.3193 3.6923 18 14 8.5229 7.9547 3.4278 19 1 7.5468 8.2373 4.5106 20 1 9.8807 8.3673 3.8651 21 1 8.1435 8.7135 2.2089 22 6 3.4784 1.4313 0.2398 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 0.4126 2.5207 0.8152 29 1 1.3517 1.5730 2.0139 30 1 2.3060 3.7691 2.2864 31 1 2.1859 4.1290 0.5328 32 1 5.5739 3.1241 -0.0384 33 1 4.1411 3.9963 -0.6341 34 1 4.1974 5.2771 1.4306 35 1 4.4413 6.1138 -1.1860 36 1 4.3736 7.2527 0.1803 37 1 5.6823 7.3792 -1.0192 38 1 7.3096 7.2954 0.8182 39 1 6.0682 7.0383 2.0676 40 1 9.9381 5.6743 4.3642 41 1 3.7895 0.5542 0.8072 42 1 4.0101 1.4660 -0.7111 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695836460.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:51 Heat of formation + Delta-G solvation = -31.255756 kcal Electronic energy + Delta-G solvation = -17646.773689 eV Core-core repulsion = 15046.030174 eV Total energy + Delta-G solvation = -2600.743515 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.31639 -38.20260 -35.31050 -34.31606 -32.11298 -30.27077 -29.82360 -28.89100 -25.21935 -24.18864 -24.07989 -21.66426 -21.26300 -20.79877 -18.75765 -17.23275 -16.95399 -16.34020 -16.00191 -15.85752 -15.32969 -15.07713 -14.50786 -14.27661 -14.07239 -13.86727 -13.71832 -13.45417 -13.33262 -13.03366 -12.85048 -12.53885 -12.38877 -12.25719 -12.04408 -11.91235 -11.80188 -11.67923 -11.58607 -11.50982 -11.32523 -11.06083 -10.66075 -9.38647 -8.97003 -8.15884 -6.14695 1.39120 1.40798 1.52036 2.44185 3.05141 3.16730 3.35356 3.73930 3.75193 4.06299 4.18846 4.22124 4.31258 4.34757 4.43397 4.47698 4.55533 4.58802 4.62084 4.67482 4.82079 4.89856 4.93463 4.94598 4.99908 5.06118 5.12304 5.16106 5.19912 5.23982 5.28120 5.33122 5.37587 5.55260 5.78284 5.93228 6.11851 6.37000 6.53216 6.79081 6.93630 7.45884 9.01859 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.038932 B = 0.004500 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.036174 B = 6221.044297 C = 6515.295797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.037 3.963 3 N -0.526 5.526 4 C 0.039 3.961 5 C -0.115 4.115 6 C -0.093 4.093 7 H 0.063 0.937 8 C 0.082 3.918 9 N -0.685 5.685 10 C 0.101 3.899 11 H 0.051 0.949 12 C -0.170 4.170 13 C -0.002 4.002 14 C -0.489 4.489 15 H 0.031 0.969 16 C -0.007 4.007 17 N -0.961 5.961 18 Si 0.949 3.051 19 H -0.271 1.271 20 H -0.290 1.290 21 H -0.246 1.246 22 C 0.045 3.955 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.072 0.928 26 H 0.032 0.968 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.045 0.955 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.048 0.952 33 H 0.037 0.963 34 H 0.339 0.661 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.020 0.980 39 H 0.016 0.984 40 H 0.260 0.740 41 H 0.044 0.956 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.053 -5.370 -8.315 21.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.091 4.091 3 N -0.251 5.251 4 C -0.088 4.088 5 C -0.153 4.153 6 C -0.113 4.113 7 H 0.082 0.918 8 C -0.047 4.047 9 N -0.316 5.316 10 C -0.009 4.009 11 H 0.070 0.930 12 C -0.229 4.229 13 C -0.040 4.040 14 C -0.528 4.528 15 H 0.049 0.951 16 C -0.201 4.201 17 N -0.604 5.604 18 Si 0.773 3.227 19 H -0.197 1.197 20 H -0.216 1.216 21 H -0.170 1.170 22 C -0.083 4.083 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.090 0.910 26 H 0.050 0.950 27 H 0.095 0.905 28 H 0.111 0.889 29 H 0.063 0.937 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.157 0.843 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.038 0.962 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -18.543 -5.499 -8.408 21.090 hybrid contribution 0.356 0.379 0.750 0.912 sum -18.187 -5.120 -7.658 20.387 Atomic orbital electron populations 1.21808 0.93593 1.02612 1.02391 1.22343 0.97061 0.88807 1.00867 1.64864 1.03989 1.12668 1.43595 1.23229 0.98858 0.94215 0.92507 1.22536 0.92903 0.97697 1.02152 1.21935 0.96082 0.94745 0.98505 0.91819 1.21881 0.97269 0.91637 0.93950 1.60331 1.21251 1.10300 1.39706 1.21341 0.93742 0.92447 0.93389 0.93030 1.22420 1.00257 0.99963 1.00223 1.19572 0.94477 0.95015 0.94903 1.21321 1.17692 0.94750 1.19019 0.95106 1.25997 0.95292 1.02702 0.96155 1.70089 1.25616 1.37281 1.27439 0.85681 0.77058 0.80436 0.79491 1.19686 1.21619 1.16997 1.22825 0.89459 0.96440 0.99618 0.92065 0.92453 0.90955 0.95008 0.90501 0.88888 0.93711 0.90627 0.90764 0.93392 0.94536 0.84281 0.92057 0.92017 0.91899 0.96217 0.96610 0.93102 0.93809 0.90454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.57 71.98 0.69 -1.38 16 2 C 0.04 0.67 5.75 86.30 0.50 1.16 16 3 N -0.53 -11.37 5.40 -883.02 -4.76 -16.13 16 4 C 0.04 0.78 5.10 86.65 0.44 1.22 16 5 C -0.11 -2.59 5.89 31.80 0.19 -2.40 16 6 C -0.09 -2.53 3.23 -9.91 -0.03 -2.57 16 7 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 8 C 0.08 2.55 4.64 86.30 0.40 2.95 16 9 N -0.68 -25.05 5.96 -491.56 -2.93 -27.98 16 10 C 0.10 3.89 2.53 44.91 0.11 4.00 16 11 H 0.05 2.14 7.80 -2.39 -0.02 2.13 16 12 C -0.17 -4.96 9.16 71.98 0.66 -4.30 16 13 C 0.00 -0.09 3.72 29.85 0.11 0.02 16 14 C -0.49 -28.86 9.39 25.60 0.24 -28.62 16 15 H 0.03 2.04 7.99 -2.91 -0.02 2.01 16 16 C -0.01 -0.43 5.47 84.66 0.46 0.03 16 17 N -0.96 -62.55 13.96 21.45 0.30 -62.25 16 18 Si 0.95 45.69 27.47 68.60 1.88 47.58 16 19 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 20 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 21 H -0.25 -10.90 6.54 99.48 0.65 -10.24 16 22 C 0.05 1.09 6.35 86.45 0.55 1.64 16 23 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.06 0.79 6.79 -2.39 -0.02 0.78 16 25 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 26 H 0.03 0.58 7.81 -2.39 -0.02 0.56 16 27 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.09 1.59 7.66 -2.39 -0.02 1.58 16 29 H 0.04 0.88 8.00 -2.38 -0.02 0.86 16 30 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.07 1.64 7.76 -2.39 -0.02 1.62 16 32 H 0.05 1.66 8.06 -2.38 -0.02 1.64 16 33 H 0.04 1.04 7.29 -2.39 -0.02 1.02 16 34 H 0.34 11.04 7.79 -89.70 -0.70 10.34 16 35 H 0.06 1.57 7.45 -2.39 -0.02 1.55 16 36 H 0.06 1.68 8.13 -2.39 -0.02 1.66 16 37 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 39 H 0.02 0.72 7.57 -2.39 -0.02 0.71 16 40 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 41 H 0.04 1.05 7.57 -2.39 -0.02 1.03 16 42 H 0.08 1.89 7.69 -2.39 -0.02 1.88 16 Total: -1.00 -67.59 324.06 -0.99 -68.58 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 0.20 Total: 18.44 kcal Atomic # 6 Polarization: -32.56 SS G_CDS: 4.32 Total: -28.24 kcal Atomic # 7 Polarization: -98.97 SS G_CDS: -7.40 Total: -106.36 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.88 Total: 47.58 kcal Total: -67.59 -0.99 -68.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695836460.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.323 kcal (2) G-P(sol) polarization free energy of solvation -67.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds