Wall clock time and date at job start Mon Mar 30 2020 03:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46894 * 109.47515 * 2 1 4 4 C 1.48542 * 110.99968 * 52.60297 * 3 2 1 5 5 C 1.54931 * 103.22694 * 159.72119 * 4 3 2 6 6 C 1.54599 * 102.92476 * 322.58603 * 5 4 3 7 7 H 1.08997 * 110.30774 * 263.03983 * 6 5 4 8 8 C 1.53004 * 110.39035 * 140.91705 * 6 5 4 9 9 N 1.46897 * 109.47167 * 69.23827 * 8 6 5 10 10 C 1.46898 * 110.99787 * 179.97438 * 9 8 6 11 11 H 1.08999 * 109.47058 * 35.00025 * 10 9 8 12 12 C 1.52999 * 109.47346 * 274.99484 * 10 9 8 13 13 C 1.53001 * 109.47135 * 154.99995 * 10 9 8 14 14 C 1.50711 * 109.47061 * 295.00017 * 13 10 9 15 15 H 1.07999 * 119.99852 * 359.97438 * 14 13 10 16 16 C 1.37872 * 119.99835 * 180.02562 * 14 13 10 17 17 N 1.31511 * 120.00322 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99518 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47462 * 59.99816 * 18 16 14 20 20 H 1.48501 * 109.46909 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46995 * 299.99355 * 18 16 14 22 22 C 1.47903 * 111.00089 * 169.99840 * 3 2 1 23 23 H 1.09002 * 109.47153 * 59.99762 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99953 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47153 * 120.00238 * 2 1 3 27 27 H 1.08998 * 109.47533 * 239.99867 * 2 1 3 28 28 H 1.08999 * 110.66829 * 278.16218 * 4 3 2 29 29 H 1.09005 * 110.66356 * 41.28669 * 4 3 2 30 30 H 1.08997 * 110.72506 * 204.22832 * 5 4 3 31 31 H 1.09001 * 110.87920 * 81.01712 * 5 4 3 32 32 H 1.09004 * 109.46540 * 189.24003 * 8 6 5 33 33 H 1.09004 * 109.46832 * 309.23586 * 8 6 5 34 34 H 1.00903 * 110.99861 * 303.94873 * 9 8 6 35 35 H 1.09000 * 109.46544 * 60.00656 * 12 10 9 36 36 H 1.08999 * 109.46963 * 179.97438 * 12 10 9 37 37 H 1.08997 * 109.47181 * 300.00721 * 12 10 9 38 38 H 1.09001 * 109.47418 * 54.99482 * 13 10 9 39 39 H 1.08997 * 109.47355 * 175.00463 * 13 10 9 40 40 H 0.97006 * 119.99904 * 179.97438 * 17 16 14 41 41 H 1.08994 * 109.91868 * 333.51091 * 22 3 2 42 42 H 1.09000 * 109.91476 * 94.61275 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.4031 2.1676 1.1017 5 6 2.3782 3.3584 1.2793 6 6 3.7624 2.7089 1.0513 7 1 4.2236 2.4561 2.0060 8 6 4.6693 3.6516 0.2575 9 7 5.0254 4.8067 1.0923 10 6 5.8981 5.7352 0.3615 11 1 5.6136 5.7494 -0.6906 12 6 7.3522 5.2771 0.4905 13 6 5.7524 7.1408 0.9482 14 6 4.3507 7.6411 0.7114 15 1 3.6354 7.0190 0.1939 16 6 3.9817 8.8935 1.1546 17 7 4.8528 9.6512 1.7843 18 14 2.2440 9.5133 0.8617 19 1 1.2752 8.6001 1.5195 20 1 2.1026 10.8776 1.4310 21 1 1.9728 9.5549 -0.5977 22 6 3.4784 1.4313 0.2398 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 0.4126 2.5207 0.8152 29 1 1.3517 1.5730 2.0139 30 1 2.3060 3.7691 2.2864 31 1 2.1873 4.1312 0.5347 32 1 5.5758 3.1221 -0.0359 33 1 4.1446 3.9954 -0.6339 34 1 4.1991 5.2769 1.4304 35 1 7.4560 4.2758 0.0725 36 1 7.9996 5.9658 -0.0522 37 1 7.6366 5.2629 1.5426 38 1 5.9509 7.1097 2.0195 39 1 6.4637 7.8113 0.4660 40 1 4.5932 10.5325 2.0958 41 1 3.7895 0.5542 0.8072 42 1 4.0101 1.4660 -0.7111 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695836465.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:55 Heat of formation + Delta-G solvation = -18.273310 kcal Electronic energy + Delta-G solvation = -17756.936670 eV Core-core repulsion = 15156.756116 eV Total energy + Delta-G solvation = -2600.180554 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.26398 -36.58101 -33.98252 -32.49227 -30.60008 -29.29147 -27.96629 -27.35471 -23.86939 -23.18902 -22.59926 -20.60936 -19.83608 -19.20984 -16.32611 -16.04468 -15.87734 -15.16948 -14.69402 -14.46377 -14.09525 -13.69445 -13.11665 -12.92798 -12.86397 -12.33137 -12.16355 -11.82900 -11.63867 -11.50494 -11.40259 -11.22559 -11.18810 -11.08321 -10.83036 -10.64968 -10.50682 -10.42771 -10.25647 -10.06413 -9.17809 -9.04306 -8.44838 -8.37322 -7.58374 -6.00630 -4.03654 3.32315 3.37238 3.39405 3.95813 4.44907 4.58617 4.78441 4.85636 5.01377 5.08652 5.26880 5.30272 5.34308 5.43873 5.51528 5.65967 5.67527 5.72708 5.81790 5.91725 5.96821 5.99091 6.07215 6.09342 6.24474 6.29220 6.32354 6.41124 6.45741 6.60406 6.90449 6.97014 6.99477 7.02239 7.57083 7.66457 7.99234 8.11430 8.33706 8.41123 9.02359 9.60413 11.10281 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022492 B = 0.005719 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.595507 B = 4894.515789 C = 5945.651699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.042 3.958 3 N -0.519 5.519 4 C 0.036 3.964 5 C -0.122 4.122 6 C -0.094 4.094 7 H 0.081 0.919 8 C 0.070 3.930 9 N -0.684 5.684 10 C 0.087 3.913 11 H 0.028 0.972 12 C -0.134 4.134 13 C 0.021 3.979 14 C -0.523 4.523 15 H 0.051 0.949 16 C 0.061 3.939 17 N -0.892 5.892 18 Si 0.889 3.111 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.278 1.278 22 C 0.042 3.958 23 H 0.063 0.937 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.032 0.968 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.041 0.959 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.027 0.973 34 H 0.354 0.646 35 H 0.035 0.965 36 H 0.047 0.953 37 H 0.054 0.946 38 H 0.025 0.975 39 H 0.020 0.980 40 H 0.261 0.739 41 H 0.041 0.959 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.954 -17.167 -1.917 17.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.086 4.086 3 N -0.244 5.244 4 C -0.092 4.092 5 C -0.160 4.160 6 C -0.114 4.114 7 H 0.099 0.901 8 C -0.060 4.060 9 N -0.318 5.318 10 C -0.023 4.023 11 H 0.046 0.954 12 C -0.192 4.192 13 C -0.017 4.017 14 C -0.561 4.561 15 H 0.069 0.931 16 C -0.140 4.140 17 N -0.531 5.531 18 Si 0.716 3.284 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.086 4.086 23 H 0.082 0.918 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.050 0.950 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.045 0.955 34 H 0.175 0.825 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.043 0.957 39 H 0.039 0.961 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.545 -17.098 -2.032 17.808 hybrid contribution -1.377 0.415 -0.009 1.439 sum -5.922 -16.682 -2.041 17.820 Atomic orbital electron populations 1.21849 0.94999 1.01556 1.02610 1.22248 0.95950 0.89862 1.00580 1.64826 1.04660 1.11310 1.43557 1.23230 0.98915 0.94776 0.92251 1.22591 0.93525 0.97255 1.02613 1.22016 0.95944 0.94227 0.99173 0.90096 1.21966 0.97059 0.92738 0.94206 1.60570 1.23008 1.10085 1.38166 1.21602 0.91260 0.94224 0.95194 0.95386 1.21787 0.97035 0.99024 1.01384 1.19276 0.96750 0.88787 0.96850 1.21139 0.97143 1.00843 1.37012 0.93081 1.24975 0.97064 0.96892 0.95099 1.69952 1.34349 1.10224 1.38540 0.86715 0.85163 0.78004 0.78474 1.20181 1.21286 1.20345 1.22909 0.88749 0.97042 0.99930 0.91813 0.92539 0.92438 0.95002 0.90877 0.90225 0.94022 0.90626 0.90477 0.92094 0.95501 0.82517 0.94572 0.93410 0.92719 0.95657 0.96130 0.92920 0.94029 0.90345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.57 37.16 0.36 -0.99 16 2 C 0.04 0.42 5.75 -3.83 -0.02 0.40 16 3 N -0.52 -6.42 5.40 -230.45 -1.24 -7.66 16 4 C 0.04 0.44 5.10 -1.90 -0.01 0.43 16 5 C -0.12 -1.70 5.89 -24.87 -0.15 -1.85 16 6 C -0.09 -1.31 3.22 -89.26 -0.29 -1.59 16 7 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 8 C 0.07 1.14 4.64 -3.82 -0.02 1.12 16 9 N -0.68 -13.24 6.31 -106.72 -0.67 -13.91 16 10 C 0.09 1.83 2.59 -67.71 -0.18 1.66 16 11 H 0.03 0.61 7.80 -51.93 -0.41 0.21 16 12 C -0.13 -2.47 9.41 37.16 0.35 -2.12 16 13 C 0.02 0.53 4.57 -27.88 -0.13 0.40 16 14 C -0.52 -14.44 8.12 -34.44 -0.28 -14.72 16 15 H 0.05 1.37 7.49 -52.49 -0.39 0.98 16 16 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 17 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 18 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C 0.04 0.52 6.35 -2.75 -0.02 0.50 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.50 6.79 -51.93 -0.35 0.15 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.03 0.31 7.81 -51.93 -0.41 -0.09 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.08 0.93 7.66 -51.93 -0.40 0.54 16 29 H 0.04 0.47 8.00 -51.93 -0.42 0.06 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.08 1.22 7.77 -51.93 -0.40 0.81 16 32 H 0.06 0.94 7.44 -51.93 -0.39 0.55 16 33 H 0.03 0.47 7.91 -51.93 -0.41 0.06 16 34 H 0.35 7.42 6.53 -39.29 -0.26 7.16 16 35 H 0.04 0.59 7.45 -51.93 -0.39 0.20 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.04 0.47 7.57 -51.93 -0.39 0.08 16 42 H 0.08 0.97 7.69 -51.93 -0.40 0.57 16 LS Contribution 326.03 15.07 4.91 4.91 Total: -1.00 -28.83 326.03 -9.71 -38.54 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -7.95 Total: 2.64 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: -0.48 Total: -15.12 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: -1.18 Total: -47.44 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.83 -9.71 -38.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695836465.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.264 kcal (2) G-P(sol) polarization free energy of solvation -28.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds