Wall clock time and date at job start Mon Mar 30 2020 03:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46894 * 109.47515 * 2 1 4 4 C 1.48542 * 110.99968 * 52.60297 * 3 2 1 5 5 C 1.54931 * 103.22694 * 159.72119 * 4 3 2 6 6 C 1.54599 * 102.92476 * 322.58603 * 5 4 3 7 7 H 1.08997 * 110.30774 * 263.03983 * 6 5 4 8 8 C 1.53004 * 110.39035 * 140.91705 * 6 5 4 9 9 N 1.46897 * 109.47167 * 69.23827 * 8 6 5 10 10 C 1.46898 * 110.99787 * 179.97438 * 9 8 6 11 11 H 1.08999 * 109.47058 * 35.00025 * 10 9 8 12 12 C 1.52999 * 109.47346 * 274.99484 * 10 9 8 13 13 C 1.53001 * 109.47135 * 154.99995 * 10 9 8 14 14 C 1.50711 * 109.47061 * 295.00017 * 13 10 9 15 15 H 1.07999 * 119.99852 * 359.97438 * 14 13 10 16 16 C 1.37872 * 119.99835 * 180.02562 * 14 13 10 17 17 N 1.31511 * 120.00322 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99518 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47462 * 59.99816 * 18 16 14 20 20 H 1.48501 * 109.46909 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46995 * 299.99355 * 18 16 14 22 22 C 1.47903 * 111.00089 * 169.99840 * 3 2 1 23 23 H 1.09002 * 109.47153 * 59.99762 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99953 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47153 * 120.00238 * 2 1 3 27 27 H 1.08998 * 109.47533 * 239.99867 * 2 1 3 28 28 H 1.08999 * 110.66829 * 278.16218 * 4 3 2 29 29 H 1.09005 * 110.66356 * 41.28669 * 4 3 2 30 30 H 1.08997 * 110.72506 * 204.22832 * 5 4 3 31 31 H 1.09001 * 110.87920 * 81.01712 * 5 4 3 32 32 H 1.09004 * 109.46540 * 189.24003 * 8 6 5 33 33 H 1.09004 * 109.46832 * 309.23586 * 8 6 5 34 34 H 1.00903 * 110.99861 * 303.94873 * 9 8 6 35 35 H 1.09000 * 109.46544 * 60.00656 * 12 10 9 36 36 H 1.08999 * 109.46963 * 179.97438 * 12 10 9 37 37 H 1.08997 * 109.47181 * 300.00721 * 12 10 9 38 38 H 1.09001 * 109.47418 * 54.99482 * 13 10 9 39 39 H 1.08997 * 109.47355 * 175.00463 * 13 10 9 40 40 H 0.97006 * 119.99904 * 179.97438 * 17 16 14 41 41 H 1.08994 * 109.91868 * 333.51091 * 22 3 2 42 42 H 1.09000 * 109.91476 * 94.61275 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.4031 2.1676 1.1017 5 6 2.3782 3.3584 1.2793 6 6 3.7624 2.7089 1.0513 7 1 4.2236 2.4561 2.0060 8 6 4.6693 3.6516 0.2575 9 7 5.0254 4.8067 1.0923 10 6 5.8981 5.7352 0.3615 11 1 5.6136 5.7494 -0.6906 12 6 7.3522 5.2771 0.4905 13 6 5.7524 7.1408 0.9482 14 6 4.3507 7.6411 0.7114 15 1 3.6354 7.0190 0.1939 16 6 3.9817 8.8935 1.1546 17 7 4.8528 9.6512 1.7843 18 14 2.2440 9.5133 0.8617 19 1 1.2752 8.6001 1.5195 20 1 2.1026 10.8776 1.4310 21 1 1.9728 9.5549 -0.5977 22 6 3.4784 1.4313 0.2398 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 0.4126 2.5207 0.8152 29 1 1.3517 1.5730 2.0139 30 1 2.3060 3.7691 2.2864 31 1 2.1873 4.1312 0.5347 32 1 5.5758 3.1221 -0.0359 33 1 4.1446 3.9954 -0.6339 34 1 4.1991 5.2769 1.4304 35 1 7.4560 4.2758 0.0725 36 1 7.9996 5.9658 -0.0522 37 1 7.6366 5.2629 1.5426 38 1 5.9509 7.1097 2.0195 39 1 6.4637 7.8113 0.4660 40 1 4.5932 10.5325 2.0958 41 1 3.7895 0.5542 0.8072 42 1 4.0101 1.4660 -0.7111 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695836465.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:54 Heat of formation + Delta-G solvation = -37.246274 kcal Electronic energy + Delta-G solvation = -17757.759399 eV Core-core repulsion = 15156.756116 eV Total energy + Delta-G solvation = -2601.003283 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.29766 -38.14156 -35.35403 -34.32155 -31.95358 -30.26351 -29.35825 -29.09732 -25.46696 -24.33132 -24.06668 -21.54672 -21.14773 -20.74274 -18.50388 -17.14388 -16.96988 -16.60646 -16.34379 -15.83487 -15.30238 -14.95141 -14.44132 -14.32421 -13.92692 -13.62685 -13.45584 -13.35638 -13.19897 -13.14612 -12.66632 -12.57796 -12.40595 -12.36289 -12.26164 -12.13435 -11.89142 -11.85577 -11.57112 -11.44848 -11.15078 -10.96881 -10.56793 -9.34612 -9.17382 -8.19077 -6.29637 1.39512 1.41320 1.49173 2.40298 3.06890 3.12199 3.37442 3.74368 3.75125 4.07508 4.21470 4.29150 4.32984 4.34647 4.50810 4.55368 4.60050 4.62157 4.67265 4.73765 4.81943 4.90855 4.93764 4.98078 5.02770 5.06738 5.13476 5.21626 5.22655 5.27723 5.34076 5.37142 5.50360 5.56448 5.84343 5.95454 6.15739 6.21490 6.43725 6.67388 6.85077 7.39106 8.92401 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022492 B = 0.005719 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.595507 B = 4894.515789 C = 5945.651699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.040 3.960 3 N -0.535 5.535 4 C 0.044 3.956 5 C -0.124 4.124 6 C -0.088 4.088 7 H 0.082 0.918 8 C 0.075 3.925 9 N -0.684 5.684 10 C 0.093 3.907 11 H 0.020 0.980 12 C -0.126 4.126 13 C 0.028 3.972 14 C -0.534 4.534 15 H 0.055 0.945 16 C 0.007 3.993 17 N -0.930 5.930 18 Si 0.957 3.043 19 H -0.265 1.265 20 H -0.284 1.284 21 H -0.271 1.271 22 C 0.047 3.953 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.074 0.926 26 H 0.039 0.961 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.014 0.986 34 H 0.342 0.658 35 H 0.061 0.939 36 H 0.051 0.949 37 H 0.050 0.950 38 H -0.002 1.002 39 H -0.006 1.006 40 H 0.263 0.737 41 H 0.057 0.943 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.057 -18.994 -2.279 20.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.088 4.088 3 N -0.260 5.260 4 C -0.084 4.084 5 C -0.162 4.162 6 C -0.107 4.107 7 H 0.101 0.899 8 C -0.055 4.055 9 N -0.317 5.317 10 C -0.016 4.016 11 H 0.039 0.961 12 C -0.184 4.184 13 C -0.009 4.009 14 C -0.572 4.572 15 H 0.073 0.927 16 C -0.191 4.191 17 N -0.570 5.570 18 Si 0.782 3.218 19 H -0.190 1.190 20 H -0.209 1.209 21 H -0.197 1.197 22 C -0.081 4.081 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.093 0.907 26 H 0.057 0.943 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.032 0.968 34 H 0.162 0.838 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.016 0.984 39 H 0.012 0.988 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.645 -18.952 -2.404 19.921 hybrid contribution -1.006 0.969 0.095 1.400 sum -6.650 -17.984 -2.309 19.312 Atomic orbital electron populations 1.21827 0.94145 1.02586 1.02130 1.22327 0.96680 0.88571 1.01179 1.64827 1.04617 1.12838 1.43717 1.23160 0.98398 0.94015 0.92825 1.22553 0.94482 0.97563 1.01649 1.21943 0.95205 0.94472 0.99127 0.89934 1.22014 0.98006 0.91880 0.93581 1.60628 1.22335 1.10182 1.38509 1.21437 0.93636 0.92246 0.94324 0.96149 1.21697 0.94782 1.00501 1.01445 1.19134 0.95466 0.91327 0.95014 1.21464 0.97950 1.01118 1.36696 0.92725 1.25856 1.01359 0.97165 0.94763 1.70085 1.36567 1.10668 1.39669 0.85619 0.80038 0.77516 0.78605 1.18983 1.20911 1.19666 1.22843 0.89004 0.96462 0.99784 0.92600 0.92680 0.90697 0.94295 0.90299 0.89954 0.92858 0.90950 0.92733 0.90806 0.96798 0.83847 0.91967 0.92986 0.93132 0.98393 0.98754 0.92800 0.92485 0.90384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.57 71.98 0.69 -1.60 16 2 C 0.04 0.71 5.75 86.30 0.50 1.21 16 3 N -0.53 -12.15 5.40 -883.02 -4.76 -16.92 16 4 C 0.04 0.98 5.10 86.65 0.44 1.43 16 5 C -0.12 -3.39 5.89 31.80 0.19 -3.21 16 6 C -0.09 -2.32 3.22 -9.91 -0.03 -2.35 16 7 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 8 C 0.07 2.34 4.64 86.31 0.40 2.74 16 9 N -0.68 -26.34 6.31 -491.57 -3.10 -29.44 16 10 C 0.09 3.97 2.59 44.92 0.12 4.08 16 11 H 0.02 0.90 7.80 -2.39 -0.02 0.88 16 12 C -0.13 -4.52 9.41 71.98 0.68 -3.84 16 13 C 0.03 1.48 4.57 29.85 0.14 1.62 16 14 C -0.53 -29.98 8.12 25.60 0.21 -29.78 16 15 H 0.05 2.96 7.49 -2.91 -0.02 2.94 16 16 C 0.01 0.39 5.46 84.65 0.46 0.85 16 17 N -0.93 -56.54 13.29 21.44 0.28 -56.26 16 18 Si 0.96 44.25 29.54 68.60 2.03 46.27 16 19 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 20 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 22 C 0.05 1.06 6.35 86.45 0.55 1.61 16 23 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.05 0.85 6.79 -2.39 -0.02 0.84 16 25 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 26 H 0.04 0.64 7.81 -2.39 -0.02 0.62 16 27 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.08 1.81 7.66 -2.39 -0.02 1.79 16 29 H 0.05 1.09 8.00 -2.38 -0.02 1.07 16 30 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.05 1.72 7.77 -2.39 -0.02 1.71 16 32 H 0.07 2.13 7.44 -2.38 -0.02 2.11 16 33 H 0.01 0.47 7.91 -2.39 -0.02 0.46 16 34 H 0.34 14.53 6.53 -89.69 -0.59 13.95 16 35 H 0.06 1.89 7.45 -2.39 -0.02 1.88 16 36 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 39 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 40 H 0.26 15.10 8.31 -92.70 -0.77 14.33 16 41 H 0.06 1.11 7.57 -2.39 -0.02 1.10 16 42 H 0.08 1.76 7.69 -2.39 -0.02 1.74 16 Total: -1.00 -61.72 326.03 -0.85 -62.57 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 0.37 Total: 21.01 kcal Atomic # 6 Polarization: -31.57 SS G_CDS: 4.33 Total: -27.24 kcal Atomic # 7 Polarization: -95.03 SS G_CDS: -7.58 Total: -102.61 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Total: -61.72 -0.85 -62.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695836465.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.324 kcal (2) G-P(sol) polarization free energy of solvation -61.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds