Wall clock time and date at job start Mon Mar 30 2020 03:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46904 * 109.47506 * 2 1 4 4 C 1.48554 * 111.00048 * 290.12828 * 3 2 1 5 5 C 1.54373 * 104.59679 * 200.95487 * 4 3 2 6 6 C 1.54262 * 105.05747 * 23.85441 * 5 4 3 7 7 H 1.09008 * 110.32292 * 240.99836 * 6 5 4 8 8 N 1.46906 * 110.32350 * 118.89678 * 6 5 4 9 9 C 1.46903 * 110.99600 * 185.40676 * 8 6 5 10 10 C 1.46897 * 111.00120 * 61.45442 * 8 6 5 11 11 H 1.09007 * 109.46979 * 310.00043 * 10 8 6 12 12 C 1.53001 * 109.47185 * 69.99856 * 10 8 6 13 13 C 1.52999 * 109.46891 * 190.00097 * 10 8 6 14 14 C 1.50695 * 109.47057 * 64.99851 * 13 10 8 15 15 H 1.07999 * 120.00538 * 359.97438 * 14 13 10 16 16 C 1.37881 * 119.99661 * 179.97438 * 14 13 10 17 17 N 1.31520 * 120.00186 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00030 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47297 * 89.99863 * 18 16 14 20 20 H 1.48503 * 109.47261 * 330.00044 * 18 16 14 21 21 H 1.48500 * 109.47454 * 210.00037 * 18 16 14 22 22 C 1.48554 * 111.00174 * 174.70630 * 3 2 1 23 23 H 1.08998 * 109.47282 * 59.99844 * 1 2 3 24 24 H 1.08996 * 109.47372 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47374 * 299.99804 * 1 2 3 26 26 H 1.09001 * 109.47374 * 240.00196 * 2 1 3 27 27 H 1.09008 * 109.47295 * 120.00242 * 2 1 3 28 28 H 1.09008 * 110.41013 * 82.17620 * 4 3 2 29 29 H 1.09003 * 110.41251 * 319.73788 * 4 3 2 30 30 H 1.09000 * 110.32971 * 264.95982 * 5 4 3 31 31 H 1.09001 * 110.32794 * 142.74509 * 5 4 3 32 32 H 1.09005 * 109.47338 * 296.04436 * 9 8 6 33 33 H 1.09001 * 109.47492 * 56.04645 * 9 8 6 34 34 H 1.09002 * 109.47010 * 176.04399 * 9 8 6 35 35 H 1.09000 * 109.47197 * 299.99829 * 12 10 8 36 36 H 1.08998 * 109.47032 * 60.00494 * 12 10 8 37 37 H 1.09006 * 109.46787 * 180.02562 * 12 10 8 38 38 H 1.09002 * 109.46997 * 304.99413 * 13 10 8 39 39 H 1.09000 * 109.46625 * 184.99838 * 13 10 8 40 40 H 0.97001 * 119.99697 * 359.97438 * 17 16 14 41 41 H 1.08999 * 110.41587 * 40.26215 * 22 3 2 42 42 H 1.09001 * 110.41519 * 277.82043 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7472 2.0460 -1.3022 5 6 2.7452 3.2225 -1.3576 6 6 3.8978 2.8149 -0.4168 7 1 3.9913 3.5311 0.3997 8 7 5.1595 2.7268 -1.1640 9 6 6.2416 2.2163 -0.3116 10 6 5.5177 4.0264 -1.7476 11 1 4.6607 4.4316 -2.2858 12 6 5.9223 4.9923 -0.6320 13 6 6.6888 3.8456 -2.7154 14 6 6.2521 2.9930 -3.8786 15 1 5.2405 2.6172 -3.9231 16 6 7.1440 2.6925 -4.8863 17 7 8.3757 3.1505 -4.8324 18 14 6.6029 1.6351 -6.3279 19 1 6.0625 2.5041 -7.4041 20 1 5.5495 0.6889 -5.8800 21 1 7.7664 0.8714 -6.8459 22 6 3.4991 1.4265 0.1280 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 0.7221 2.4153 -1.3339 29 1 1.9287 1.3544 -2.1249 30 1 2.2719 4.1377 -1.0020 31 1 3.1158 3.3571 -2.3738 32 1 6.4309 2.9223 0.4971 33 1 5.9503 1.2532 0.1076 34 1 7.1465 2.0946 -0.9070 35 1 5.0879 5.1211 0.0574 36 1 6.7792 4.5872 -0.0938 37 1 6.1876 5.9568 -1.0651 38 1 7.5156 3.3587 -2.1982 39 1 7.0122 4.8204 -3.0805 40 1 8.6565 3.6999 -4.0840 41 1 3.9548 0.6380 -0.4709 42 1 3.7932 1.3294 1.1730 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695912862.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:59 Heat of formation + Delta-G solvation = 2.492278 kcal Electronic energy + Delta-G solvation = -18457.731025 eV Core-core repulsion = 15858.450935 eV Total energy + Delta-G solvation = -2599.280090 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.43889 -37.07995 -33.50317 -32.40581 -30.45595 -29.10420 -27.43632 -26.92216 -25.04101 -22.94602 -22.66174 -20.59133 -20.44089 -18.33651 -16.65697 -16.24478 -16.05756 -14.92475 -14.55354 -14.01410 -13.66415 -13.52752 -13.46114 -12.97094 -12.80854 -12.65990 -12.34572 -11.81190 -11.54459 -11.42625 -11.23328 -11.22327 -11.03160 -10.96656 -10.84830 -10.65016 -10.54928 -10.45943 -10.07123 -9.98122 -9.41805 -8.44849 -8.41741 -8.20396 -7.49805 -6.21036 -3.86230 3.49920 3.54365 3.69939 4.00117 4.61480 4.66050 4.78780 4.89153 5.11318 5.25808 5.36578 5.44973 5.53444 5.55543 5.65573 5.70963 5.77199 5.77967 5.85673 5.88208 5.89725 5.95769 6.00271 6.04725 6.15297 6.19518 6.27345 6.37105 6.45626 6.54734 6.62843 6.86635 6.91547 7.09625 7.29328 7.48959 7.83889 7.92792 8.40232 8.67250 9.04772 9.82443 11.19275 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022043 B = 0.007014 C = 0.005880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.954372 B = 3990.821564 C = 4760.730848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.039 3.961 3 N -0.514 5.514 4 C 0.038 3.962 5 C -0.120 4.120 6 C 0.078 3.922 7 H 0.043 0.957 8 N -0.507 5.507 9 C 0.024 3.976 10 C 0.092 3.908 11 H 0.073 0.927 12 C -0.186 4.186 13 C 0.017 3.983 14 C -0.569 4.569 15 H 0.053 0.947 16 C 0.008 3.992 17 N -0.924 5.924 18 Si 1.068 2.932 19 H -0.291 1.291 20 H -0.290 1.290 21 H -0.287 1.287 22 C 0.041 3.959 23 H 0.053 0.947 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.037 0.963 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.047 0.953 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.018 0.982 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.041 0.959 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.009 0.991 39 H 0.007 0.993 40 H 0.265 0.735 41 H 0.058 0.942 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.064 -2.890 10.449 16.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.090 4.090 3 N -0.239 5.239 4 C -0.090 4.090 5 C -0.158 4.158 6 C -0.031 4.031 7 H 0.060 0.940 8 N -0.231 5.231 9 C -0.124 4.124 10 C -0.016 4.016 11 H 0.091 0.909 12 C -0.245 4.245 13 C -0.020 4.020 14 C -0.608 4.608 15 H 0.071 0.929 16 C -0.194 4.194 17 N -0.562 5.562 18 Si 0.898 3.102 19 H -0.218 1.218 20 H -0.216 1.216 21 H -0.213 1.213 22 C -0.087 4.087 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.055 0.945 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.036 0.964 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.028 0.972 39 H 0.026 0.974 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.900 -3.664 9.087 15.415 hybrid contribution 0.033 0.803 1.505 1.706 sum -11.867 -2.861 10.592 16.162 Atomic orbital electron populations 1.21727 0.94960 1.01238 1.02336 1.22216 0.96114 0.89812 1.00831 1.65410 1.11627 1.15406 1.31441 1.23064 0.99382 0.96211 0.90354 1.22415 0.94723 0.97224 1.01431 1.22307 0.91077 0.95221 0.94508 0.93968 1.62281 1.01234 1.27354 1.32214 1.22383 0.96187 0.98236 0.95570 1.21784 1.00179 0.85796 0.93860 0.90865 1.22532 1.00667 1.00962 1.00322 1.19311 0.92332 0.96327 0.94033 1.21959 0.99691 1.33157 1.05985 0.92878 1.25748 0.94165 0.98435 1.01050 1.70764 1.17753 1.34177 1.33474 0.83548 0.75164 0.76083 0.75402 1.21788 1.21618 1.21334 1.23126 0.87685 0.97612 1.00288 0.92747 0.92566 0.92089 0.94518 0.91117 0.90697 0.93479 0.91768 0.89341 0.96364 0.92683 0.90475 0.93951 0.92803 0.92648 0.97247 0.97444 0.92418 0.92373 0.90956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.97 37.15 0.37 -1.06 16 2 C 0.04 0.46 5.53 -3.83 -0.02 0.43 16 3 N -0.51 -7.03 5.37 -229.98 -1.24 -8.26 16 4 C 0.04 0.53 5.74 -2.19 -0.01 0.51 16 5 C -0.12 -1.84 6.01 -25.35 -0.15 -2.00 16 6 C 0.08 1.26 2.54 -66.33 -0.17 1.09 16 7 H 0.04 0.68 6.70 -51.92 -0.35 0.33 16 8 N -0.51 -9.66 4.21 -225.24 -0.95 -10.61 16 9 C 0.02 0.43 8.55 60.07 0.51 0.95 16 10 C 0.09 1.87 2.03 -67.71 -0.14 1.74 16 11 H 0.07 1.53 6.22 -51.93 -0.32 1.21 16 12 C -0.19 -3.24 8.45 37.16 0.31 -2.92 16 13 C 0.02 0.43 3.68 -27.89 -0.10 0.33 16 14 C -0.57 -16.06 8.84 -34.44 -0.30 -16.36 16 15 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 16 C 0.01 0.23 5.46 -17.82 -0.10 0.13 16 17 N -0.92 -28.60 13.65 55.43 0.76 -27.84 16 18 Si 1.07 26.03 29.90 -169.99 -5.08 20.95 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 C 0.04 0.60 4.83 -2.19 -0.01 0.59 16 23 H 0.05 0.54 7.26 -51.93 -0.38 0.17 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.04 0.46 7.88 -51.93 -0.41 0.05 16 27 H 0.07 0.77 8.13 -51.92 -0.42 0.35 16 28 H 0.07 0.93 7.76 -51.92 -0.40 0.53 16 29 H 0.05 0.70 7.82 -51.93 -0.41 0.30 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.09 1.56 6.62 -51.93 -0.34 1.22 16 32 H 0.02 0.30 6.21 -51.93 -0.32 -0.03 16 33 H 0.05 0.87 6.74 -51.93 -0.35 0.52 16 34 H 0.08 1.56 6.37 -51.93 -0.33 1.23 16 35 H 0.04 0.66 6.72 -51.93 -0.35 0.32 16 36 H 0.05 0.93 6.33 -51.93 -0.33 0.60 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.01 0.25 6.20 -51.93 -0.32 -0.07 16 39 H 0.01 0.20 8.01 -51.93 -0.42 -0.22 16 40 H 0.27 8.19 7.22 -40.82 -0.29 7.89 16 41 H 0.06 0.94 7.54 -51.93 -0.39 0.54 16 42 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 314.25 15.07 4.74 4.74 Total: -1.00 -30.16 314.25 -9.03 -39.19 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -7.45 Total: -1.60 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: 0.19 Total: -16.56 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: -1.43 Total: -46.71 kcal Atomic # 14 Polarization: 26.03 SS G_CDS: -5.08 Total: 20.95 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.16 -9.03 -39.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695912862.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.687 kcal (2) G-P(sol) polarization free energy of solvation -30.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds