Wall clock time and date at job start Mon Mar 30 2020 03:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46904 * 109.47506 * 2 1 4 4 C 1.48554 * 111.00048 * 290.12828 * 3 2 1 5 5 C 1.54373 * 104.59679 * 200.95487 * 4 3 2 6 6 C 1.54262 * 105.05747 * 23.85441 * 5 4 3 7 7 H 1.09008 * 110.32292 * 240.99836 * 6 5 4 8 8 N 1.46906 * 110.32350 * 118.89678 * 6 5 4 9 9 C 1.46903 * 110.99600 * 185.40676 * 8 6 5 10 10 C 1.46897 * 111.00120 * 61.45442 * 8 6 5 11 11 H 1.09007 * 109.46979 * 310.00043 * 10 8 6 12 12 C 1.53001 * 109.47185 * 69.99856 * 10 8 6 13 13 C 1.52999 * 109.46891 * 190.00097 * 10 8 6 14 14 C 1.50695 * 109.47057 * 64.99851 * 13 10 8 15 15 H 1.07999 * 120.00538 * 359.97438 * 14 13 10 16 16 C 1.37881 * 119.99661 * 179.97438 * 14 13 10 17 17 N 1.31520 * 120.00186 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00030 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47297 * 89.99863 * 18 16 14 20 20 H 1.48503 * 109.47261 * 330.00044 * 18 16 14 21 21 H 1.48500 * 109.47454 * 210.00037 * 18 16 14 22 22 C 1.48554 * 111.00174 * 174.70630 * 3 2 1 23 23 H 1.08998 * 109.47282 * 59.99844 * 1 2 3 24 24 H 1.08996 * 109.47372 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47374 * 299.99804 * 1 2 3 26 26 H 1.09001 * 109.47374 * 240.00196 * 2 1 3 27 27 H 1.09008 * 109.47295 * 120.00242 * 2 1 3 28 28 H 1.09008 * 110.41013 * 82.17620 * 4 3 2 29 29 H 1.09003 * 110.41251 * 319.73788 * 4 3 2 30 30 H 1.09000 * 110.32971 * 264.95982 * 5 4 3 31 31 H 1.09001 * 110.32794 * 142.74509 * 5 4 3 32 32 H 1.09005 * 109.47338 * 296.04436 * 9 8 6 33 33 H 1.09001 * 109.47492 * 56.04645 * 9 8 6 34 34 H 1.09002 * 109.47010 * 176.04399 * 9 8 6 35 35 H 1.09000 * 109.47197 * 299.99829 * 12 10 8 36 36 H 1.08998 * 109.47032 * 60.00494 * 12 10 8 37 37 H 1.09006 * 109.46787 * 180.02562 * 12 10 8 38 38 H 1.09002 * 109.46997 * 304.99413 * 13 10 8 39 39 H 1.09000 * 109.46625 * 184.99838 * 13 10 8 40 40 H 0.97001 * 119.99697 * 359.97438 * 17 16 14 41 41 H 1.08999 * 110.41587 * 40.26215 * 22 3 2 42 42 H 1.09001 * 110.41519 * 277.82043 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7472 2.0460 -1.3022 5 6 2.7452 3.2225 -1.3576 6 6 3.8978 2.8149 -0.4168 7 1 3.9913 3.5311 0.3997 8 7 5.1595 2.7268 -1.1640 9 6 6.2416 2.2163 -0.3116 10 6 5.5177 4.0264 -1.7476 11 1 4.6607 4.4316 -2.2858 12 6 5.9223 4.9923 -0.6320 13 6 6.6888 3.8456 -2.7154 14 6 6.2521 2.9930 -3.8786 15 1 5.2405 2.6172 -3.9231 16 6 7.1440 2.6925 -4.8863 17 7 8.3757 3.1505 -4.8324 18 14 6.6029 1.6351 -6.3279 19 1 6.0625 2.5041 -7.4041 20 1 5.5495 0.6889 -5.8800 21 1 7.7664 0.8714 -6.8459 22 6 3.4991 1.4265 0.1280 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 0.7221 2.4153 -1.3339 29 1 1.9287 1.3544 -2.1249 30 1 2.2719 4.1377 -1.0020 31 1 3.1158 3.3571 -2.3738 32 1 6.4309 2.9223 0.4971 33 1 5.9503 1.2532 0.1076 34 1 7.1465 2.0946 -0.9070 35 1 5.0879 5.1211 0.0574 36 1 6.7792 4.5872 -0.0938 37 1 6.1876 5.9568 -1.0651 38 1 7.5156 3.3587 -2.1982 39 1 7.0122 4.8204 -3.0805 40 1 8.6565 3.6999 -4.0840 41 1 3.9548 0.6380 -0.4709 42 1 3.7932 1.3294 1.1730 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695912862.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:59 Heat of formation + Delta-G solvation = -17.704009 kcal Electronic energy + Delta-G solvation = -18458.606802 eV Core-core repulsion = 15858.450935 eV Total energy + Delta-G solvation = -2600.155867 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.72464 -38.45514 -35.38362 -33.80372 -31.99416 -30.19503 -28.91051 -28.58155 -26.43386 -24.99034 -23.74671 -21.94786 -21.65956 -19.83631 -18.77312 -17.63877 -17.18016 -16.23929 -15.69550 -15.58789 -15.37749 -15.07398 -14.87553 -14.63396 -14.04223 -13.89849 -13.47491 -13.30639 -13.02505 -12.89174 -12.78493 -12.60329 -12.44204 -12.38454 -12.25812 -12.02576 -11.95176 -11.82736 -11.65642 -11.51542 -11.21890 -10.59266 -10.45596 -9.51744 -8.96593 -8.55751 -6.20943 1.51783 1.61249 1.78546 2.60825 2.82628 3.24091 3.34992 3.62284 3.75409 4.06772 4.12507 4.22221 4.28935 4.34735 4.37339 4.42677 4.51000 4.54420 4.61590 4.67274 4.68635 4.84337 4.90094 4.93599 4.97495 5.00089 5.03936 5.06907 5.10414 5.12806 5.23054 5.26727 5.35113 5.52377 5.78575 6.04526 6.12745 6.33250 6.37702 6.44734 6.74796 7.55900 8.85102 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022043 B = 0.007014 C = 0.005880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.954372 B = 3990.821564 C = 4760.730848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.036 3.964 3 N -0.512 5.512 4 C 0.042 3.958 5 C -0.119 4.119 6 C 0.079 3.921 7 H 0.052 0.948 8 N -0.528 5.528 9 C 0.030 3.970 10 C 0.100 3.900 11 H 0.067 0.933 12 C -0.176 4.176 13 C 0.020 3.980 14 C -0.572 4.572 15 H 0.047 0.953 16 C -0.046 4.046 17 N -0.950 5.950 18 Si 1.114 2.886 19 H -0.275 1.275 20 H -0.275 1.275 21 H -0.287 1.287 22 C 0.047 3.953 23 H 0.051 0.949 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.026 0.974 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.032 0.968 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.036 0.964 33 H 0.073 0.927 34 H 0.043 0.957 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.056 0.944 38 H -0.008 1.008 39 H -0.014 1.014 40 H 0.252 0.748 41 H 0.040 0.960 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.087 -3.462 11.546 18.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.093 4.093 3 N -0.237 5.237 4 C -0.085 4.085 5 C -0.157 4.157 6 C -0.029 4.029 7 H 0.070 0.930 8 N -0.253 5.253 9 C -0.118 4.118 10 C -0.008 4.008 11 H 0.085 0.915 12 C -0.234 4.234 13 C -0.017 4.017 14 C -0.610 4.610 15 H 0.066 0.934 16 C -0.242 4.242 17 N -0.589 5.589 18 Si 0.937 3.063 19 H -0.200 1.200 20 H -0.200 1.200 21 H -0.213 1.213 22 C -0.082 4.082 23 H 0.070 0.930 24 H 0.091 0.909 25 H 0.082 0.918 26 H 0.045 0.955 27 H 0.099 0.901 28 H 0.112 0.888 29 H 0.051 0.949 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.092 0.908 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.010 0.990 39 H 0.004 0.996 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.941 -4.228 10.207 17.788 hybrid contribution 0.645 0.978 1.204 1.680 sum -13.297 -3.250 11.410 17.820 Atomic orbital electron populations 1.21691 0.93327 1.02371 1.02300 1.22321 0.97458 0.88621 1.00853 1.65473 1.10679 1.16641 1.30903 1.23032 0.99975 0.95385 0.90157 1.22395 0.94970 0.98653 0.99722 1.22368 0.89595 0.96476 0.94500 0.93038 1.62160 1.02732 1.26621 1.33745 1.22303 0.94575 0.99712 0.95215 1.21485 0.97731 0.87523 0.94071 0.91494 1.22394 1.01532 0.99988 0.99527 1.19215 0.93809 0.94282 0.94381 1.22257 0.99236 1.32771 1.06761 0.93443 1.27189 0.93782 0.99241 1.03954 1.70897 1.18958 1.35606 1.33456 0.82951 0.75219 0.75107 0.72975 1.20033 1.20020 1.21262 1.23065 0.88416 0.95977 1.00707 0.93024 0.90939 0.91803 0.95522 0.90094 0.88782 0.94940 0.90139 0.92089 0.94611 0.90785 0.93848 0.91515 0.92759 0.92519 0.98972 0.99628 0.93840 0.94136 0.89370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.97 71.98 0.72 -1.65 16 2 C 0.04 0.76 5.53 86.30 0.48 1.23 16 3 N -0.51 -12.79 5.37 -881.53 -4.73 -17.52 16 4 C 0.04 1.11 5.74 86.45 0.50 1.61 16 5 C -0.12 -3.50 6.01 31.49 0.19 -3.31 16 6 C 0.08 2.41 2.54 45.81 0.12 2.53 16 7 H 0.05 1.50 6.70 -2.38 -0.02 1.48 16 8 N -0.53 -19.85 4.21 -866.52 -3.64 -23.50 16 9 C 0.03 1.05 8.55 127.69 1.09 2.14 16 10 C 0.10 4.09 2.03 44.92 0.09 4.18 16 11 H 0.07 2.81 6.22 -2.38 -0.01 2.79 16 12 C -0.18 -5.89 8.45 71.98 0.61 -5.28 16 13 C 0.02 1.06 3.68 29.85 0.11 1.17 16 14 C -0.57 -32.92 8.84 25.60 0.23 -32.69 16 15 H 0.05 2.74 7.74 -2.91 -0.02 2.71 16 16 C -0.05 -2.73 5.46 84.65 0.46 -2.26 16 17 N -0.95 -60.23 13.65 21.45 0.29 -59.93 16 18 Si 1.11 52.52 29.90 68.60 2.05 54.57 16 19 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 22 C 0.05 1.27 4.83 86.45 0.42 1.69 16 23 H 0.05 0.90 7.26 -2.39 -0.02 0.89 16 24 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.03 0.62 7.88 -2.39 -0.02 0.60 16 27 H 0.08 1.56 8.13 -2.38 -0.02 1.54 16 28 H 0.09 2.10 7.76 -2.38 -0.02 2.08 16 29 H 0.03 0.94 7.82 -2.39 -0.02 0.92 16 30 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.06 2.14 6.62 -2.39 -0.02 2.12 16 32 H 0.04 1.11 6.21 -2.38 -0.01 1.09 16 33 H 0.07 2.26 6.74 -2.39 -0.02 2.24 16 34 H 0.04 1.79 6.37 -2.39 -0.02 1.78 16 35 H 0.07 1.92 6.72 -2.39 -0.02 1.90 16 36 H 0.05 1.80 6.33 -2.39 -0.02 1.79 16 37 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 38 H -0.01 -0.44 6.20 -2.39 -0.01 -0.45 16 39 H -0.01 -0.81 8.01 -2.39 -0.02 -0.83 16 40 H 0.25 16.18 7.22 -92.71 -0.67 15.51 16 41 H 0.04 1.25 7.54 -2.39 -0.02 1.23 16 42 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -65.26 314.25 0.03 -65.23 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 1.06 Total: 11.81 kcal Atomic # 6 Polarization: -35.65 SS G_CDS: 5.00 Total: -30.65 kcal Atomic # 7 Polarization: -92.87 SS G_CDS: -8.09 Total: -100.95 kcal Atomic # 14 Polarization: 52.52 SS G_CDS: 2.05 Total: 54.57 kcal Total: -65.26 0.03 -65.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695912862.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.526 kcal (2) G-P(sol) polarization free energy of solvation -65.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds