Wall clock time and date at job start Mon Mar 30 2020 03:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46898 * 109.47515 * 2 1 4 4 C 1.46904 * 110.99873 * 293.95814 * 3 2 1 5 5 C 1.53007 * 109.46522 * 296.66389 * 4 3 2 6 6 C 1.46899 * 111.00137 * 169.99976 * 3 2 1 7 7 C 1.53929 * 113.73339 * 281.92411 * 6 3 2 8 8 N 1.47954 * 86.18377 * 221.92102 * 7 6 3 9 9 C 1.46897 * 111.00319 * 137.58017 * 8 7 6 10 10 H 1.09000 * 109.47656 * 200.77475 * 9 8 7 11 11 C 1.52995 * 109.47339 * 320.78581 * 9 8 7 12 12 C 1.53009 * 109.46817 * 80.78138 * 9 8 7 13 13 C 1.50698 * 109.46996 * 65.00245 * 12 9 8 14 14 H 1.08000 * 120.00430 * 359.97438 * 13 12 9 15 15 C 1.37879 * 120.00296 * 180.02562 * 13 12 9 16 16 N 1.31521 * 119.99344 * 359.97438 * 15 13 12 17 17 Si 1.86791 * 120.00450 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47326 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47087 * 119.99542 * 17 15 13 20 20 H 1.48494 * 109.47366 * 239.99481 * 17 15 13 21 21 C 1.47964 * 90.76141 * 24.69117 * 8 7 6 22 22 H 1.08991 * 109.47490 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46609 * 300.00417 * 1 2 3 24 24 H 1.08998 * 109.46861 * 59.99609 * 1 2 3 25 25 H 1.09005 * 109.46756 * 120.00044 * 2 1 3 26 26 H 1.09001 * 109.46609 * 239.99583 * 2 1 3 27 27 H 1.08999 * 109.47373 * 56.65796 * 4 3 2 28 28 H 1.09004 * 109.47095 * 176.66980 * 4 3 2 29 29 H 1.08994 * 109.47398 * 305.30536 * 5 4 3 30 30 H 1.08993 * 109.47138 * 65.30905 * 5 4 3 31 31 H 1.09007 * 109.46822 * 185.30537 * 5 4 3 32 32 H 1.08995 * 112.93623 * 53.63529 * 6 3 2 33 33 H 1.09000 * 113.76294 * 336.23972 * 7 6 3 34 34 H 1.09006 * 113.76039 * 107.60306 * 7 6 3 35 35 H 1.09002 * 109.47220 * 189.81489 * 11 9 8 36 36 H 1.09001 * 109.46770 * 309.81024 * 11 9 8 37 37 H 1.08993 * 109.47429 * 69.81354 * 11 9 8 38 38 H 1.09001 * 109.47108 * 185.00270 * 12 9 8 39 39 H 1.09000 * 109.46635 * 305.00313 * 12 9 8 40 40 H 0.96997 * 119.99913 * 180.02562 * 16 15 13 41 41 H 1.09001 * 113.76002 * 220.99654 * 21 8 7 42 42 H 1.08999 * 113.85758 * 89.64305 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.6702 2.0669 -1.2533 5 6 2.3693 1.3724 -2.4238 6 6 3.4686 1.4310 0.2381 7 6 3.8602 1.2397 1.7145 8 7 4.8416 2.3243 1.4920 9 6 4.8593 3.2590 2.6251 10 1 5.2838 4.2105 2.3048 11 6 3.4306 3.4806 3.1258 12 6 5.7107 2.6753 3.7545 13 6 7.1440 2.5716 3.3009 14 1 7.4201 2.8898 2.3064 15 6 8.1029 2.0695 4.1550 16 7 7.7666 1.6816 5.3658 17 14 9.8794 1.9403 3.5925 18 1 9.9947 2.4383 2.1982 19 1 10.7414 2.7580 4.4834 20 1 10.3145 0.5217 3.6485 21 6 4.0285 2.8582 0.3770 22 1 -0.3634 -1.0275 0.0005 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 0.5909 2.0274 -1.3997 28 1 1.9924 3.1070 -1.2031 29 1 3.4414 1.3284 -2.2324 30 1 1.9778 0.3611 -2.5325 31 1 2.1866 1.9332 -3.3406 32 1 4.0327 0.8037 -0.4520 33 1 3.0683 1.5012 2.4163 34 1 4.3154 0.2722 1.9263 35 1 3.4206 4.2993 3.8453 36 1 2.7850 3.7292 2.2835 37 1 3.0685 2.5712 3.6052 38 1 5.6519 3.3257 4.6272 39 1 5.3392 1.6840 4.0143 40 1 8.4411 1.3288 5.9669 41 1 4.6183 3.1838 -0.4800 42 1 3.2855 3.5934 0.6858 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697751378.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:07 Heat of formation + Delta-G solvation = 39.730069 kcal Electronic energy + Delta-G solvation = -18274.288164 eV Core-core repulsion = 15676.622825 eV Total energy + Delta-G solvation = -2597.665339 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.19352 -37.28927 -33.54309 -31.76915 -31.35599 -28.91659 -27.30191 -25.92042 -25.37435 -23.77731 -22.88514 -20.96704 -19.12050 -18.39023 -16.53117 -16.15480 -15.85633 -15.08411 -14.78911 -14.42913 -13.96673 -13.39283 -13.21331 -13.13124 -13.00144 -12.39962 -12.23115 -11.93303 -11.78911 -11.59862 -11.30767 -11.24187 -11.15577 -10.98513 -10.70389 -10.51931 -10.48832 -10.26100 -10.14614 -9.75805 -9.12634 -8.96063 -8.24981 -8.23139 -7.86712 -5.85240 -3.82948 3.40317 3.47427 3.53421 3.91922 4.59062 4.64027 4.70101 4.90820 5.11650 5.20174 5.22114 5.31576 5.41660 5.49183 5.51904 5.58324 5.61859 5.72982 5.83923 5.87783 5.91394 5.98312 5.99575 6.01439 6.06260 6.12908 6.20531 6.30449 6.42370 6.51664 6.70652 6.99203 7.11624 7.23354 7.26961 7.60535 7.84563 8.01550 8.15511 8.62344 9.23112 9.78572 11.26931 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.033766 B = 0.005400 C = 0.005216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.033280 B = 5183.641856 C = 5366.934703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.046 3.954 3 N -0.527 5.527 4 C 0.048 3.952 5 C -0.192 4.192 6 C 0.047 3.953 7 C 0.011 3.989 8 N -0.447 5.447 9 C 0.054 3.946 10 H 0.068 0.932 11 C -0.182 4.182 12 C 0.035 3.965 13 C -0.490 4.490 14 H 0.059 0.941 15 C 0.050 3.950 16 N -0.904 5.904 17 Si 0.889 3.111 18 H -0.273 1.273 19 H -0.287 1.287 20 H -0.287 1.287 21 C 0.002 3.998 22 H 0.055 0.945 23 H 0.062 0.938 24 H 0.052 0.948 25 H 0.074 0.926 26 H 0.035 0.965 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.057 0.943 38 H 0.017 0.983 39 H 0.016 0.984 40 H 0.256 0.744 41 H 0.075 0.925 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.191 -0.935 -12.330 18.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.082 4.082 3 N -0.251 5.251 4 C -0.080 4.080 5 C -0.250 4.250 6 C -0.062 4.062 7 C -0.118 4.118 8 N -0.169 5.169 9 C -0.055 4.055 10 H 0.087 0.913 11 C -0.241 4.241 12 C -0.003 4.003 13 C -0.528 4.528 14 H 0.078 0.922 15 C -0.149 4.149 16 N -0.545 5.545 17 Si 0.718 3.282 18 H -0.198 1.198 19 H -0.214 1.214 20 H -0.213 1.213 21 C -0.128 4.128 22 H 0.074 0.926 23 H 0.081 0.919 24 H 0.071 0.929 25 H 0.093 0.907 26 H 0.053 0.947 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.036 0.964 39 H 0.034 0.966 40 H 0.066 0.934 41 H 0.093 0.907 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.629 -0.897 -11.867 18.094 hybrid contribution 0.658 -0.335 -0.672 0.999 sum -12.971 -1.232 -12.540 18.083 Atomic orbital electron populations 1.21784 0.95233 1.01202 1.02227 1.22062 0.95636 0.89535 1.00971 1.62556 1.13535 1.15622 1.33385 1.22141 1.00015 0.98560 0.87322 1.22416 1.01824 1.01175 0.99616 1.23630 0.86547 0.98048 0.97955 1.24069 0.95175 0.98011 0.94530 1.68824 1.35680 1.06936 1.05476 1.22285 0.93705 0.96054 0.93477 0.91329 1.22548 0.99078 1.01543 1.00901 1.19080 0.94071 0.95833 0.91267 1.21226 0.92460 1.39897 0.99261 0.92226 1.25010 0.98742 0.96146 0.95045 1.69981 1.33388 1.44411 1.06738 0.86571 0.85515 0.77436 0.78673 1.19807 1.21380 1.21327 1.24044 0.96105 0.95324 0.97300 0.92632 0.91935 0.92928 0.90709 0.94731 0.90863 0.90758 0.92130 0.92744 0.92423 0.91223 0.89628 0.90329 0.92804 0.93107 0.92381 0.96433 0.96553 0.93413 0.90658 0.90736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.84 37.16 0.37 -0.99 16 2 C 0.05 0.51 5.44 -3.82 -0.02 0.49 16 3 N -0.53 -6.47 4.66 -228.05 -1.06 -7.54 16 4 C 0.05 0.50 5.69 -3.82 -0.02 0.48 16 5 C -0.19 -1.87 9.28 37.16 0.34 -1.53 16 6 C 0.05 0.67 2.54 -69.41 -0.18 0.50 16 7 C 0.01 0.19 6.66 -2.77 -0.02 0.18 16 8 N -0.45 -8.81 5.91 -230.45 -1.36 -10.18 16 9 C 0.05 1.13 2.39 -67.71 -0.16 0.97 16 10 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 11 C -0.18 -3.21 7.91 37.16 0.29 -2.92 16 12 C 0.03 0.91 4.53 -27.88 -0.13 0.78 16 13 C -0.49 -14.16 8.84 -34.44 -0.30 -14.47 16 14 H 0.06 1.73 7.74 -52.49 -0.41 1.32 16 15 C 0.05 1.46 5.46 -17.82 -0.10 1.37 16 16 N -0.90 -27.84 13.29 55.43 0.74 -27.10 16 17 Si 0.89 22.50 29.54 -169.99 -5.02 17.48 16 18 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 21 C 0.00 0.02 6.42 -2.76 -0.02 0.01 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.45 6.48 -51.93 -0.34 0.12 16 25 H 0.07 0.88 7.74 -51.93 -0.40 0.48 16 26 H 0.03 0.37 6.22 -51.93 -0.32 0.05 16 27 H 0.07 0.69 6.32 -51.93 -0.33 0.36 16 28 H 0.07 0.79 7.30 -51.93 -0.38 0.41 16 29 H 0.06 0.67 6.43 -51.93 -0.33 0.34 16 30 H 0.05 0.52 6.62 -51.93 -0.34 0.17 16 31 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 32 H 0.07 1.04 6.98 -51.93 -0.36 0.68 16 33 H 0.09 1.48 5.03 -51.93 -0.26 1.22 16 34 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.05 0.80 5.83 -51.93 -0.30 0.50 16 37 H 0.06 1.03 6.33 -51.93 -0.33 0.70 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.02 0.46 7.83 -51.93 -0.41 0.05 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 42 H 0.07 1.13 5.79 -51.93 -0.30 0.83 16 LS Contribution 315.81 15.07 4.76 4.76 Total: -1.00 -30.49 315.81 -9.22 -39.71 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -7.33 Total: -1.99 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: 0.06 Total: -15.15 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: -1.69 Total: -44.81 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.49 -9.22 -39.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697751378.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.439 kcal (2) G-P(sol) polarization free energy of solvation -30.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds