Wall clock time and date at job start Mon Mar 30 2020 03:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46898 * 109.47515 * 2 1 4 4 C 1.46904 * 110.99873 * 293.95814 * 3 2 1 5 5 C 1.53007 * 109.46522 * 296.66389 * 4 3 2 6 6 C 1.46899 * 111.00137 * 169.99976 * 3 2 1 7 7 C 1.53929 * 113.73339 * 281.92411 * 6 3 2 8 8 N 1.47954 * 86.18377 * 221.92102 * 7 6 3 9 9 C 1.46897 * 111.00319 * 137.58017 * 8 7 6 10 10 H 1.09000 * 109.47656 * 200.77475 * 9 8 7 11 11 C 1.52995 * 109.47339 * 320.78581 * 9 8 7 12 12 C 1.53009 * 109.46817 * 80.78138 * 9 8 7 13 13 C 1.50698 * 109.46996 * 65.00245 * 12 9 8 14 14 H 1.08000 * 120.00430 * 359.97438 * 13 12 9 15 15 C 1.37879 * 120.00296 * 180.02562 * 13 12 9 16 16 N 1.31521 * 119.99344 * 359.97438 * 15 13 12 17 17 Si 1.86791 * 120.00450 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47326 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47087 * 119.99542 * 17 15 13 20 20 H 1.48494 * 109.47366 * 239.99481 * 17 15 13 21 21 C 1.47964 * 90.76141 * 24.69117 * 8 7 6 22 22 H 1.08991 * 109.47490 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46609 * 300.00417 * 1 2 3 24 24 H 1.08998 * 109.46861 * 59.99609 * 1 2 3 25 25 H 1.09005 * 109.46756 * 120.00044 * 2 1 3 26 26 H 1.09001 * 109.46609 * 239.99583 * 2 1 3 27 27 H 1.08999 * 109.47373 * 56.65796 * 4 3 2 28 28 H 1.09004 * 109.47095 * 176.66980 * 4 3 2 29 29 H 1.08994 * 109.47398 * 305.30536 * 5 4 3 30 30 H 1.08993 * 109.47138 * 65.30905 * 5 4 3 31 31 H 1.09007 * 109.46822 * 185.30537 * 5 4 3 32 32 H 1.08995 * 112.93623 * 53.63529 * 6 3 2 33 33 H 1.09000 * 113.76294 * 336.23972 * 7 6 3 34 34 H 1.09006 * 113.76039 * 107.60306 * 7 6 3 35 35 H 1.09002 * 109.47220 * 189.81489 * 11 9 8 36 36 H 1.09001 * 109.46770 * 309.81024 * 11 9 8 37 37 H 1.08993 * 109.47429 * 69.81354 * 11 9 8 38 38 H 1.09001 * 109.47108 * 185.00270 * 12 9 8 39 39 H 1.09000 * 109.46635 * 305.00313 * 12 9 8 40 40 H 0.96997 * 119.99913 * 180.02562 * 16 15 13 41 41 H 1.09001 * 113.76002 * 220.99654 * 21 8 7 42 42 H 1.08999 * 113.85758 * 89.64305 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.6702 2.0669 -1.2533 5 6 2.3693 1.3724 -2.4238 6 6 3.4686 1.4310 0.2381 7 6 3.8602 1.2397 1.7145 8 7 4.8416 2.3243 1.4920 9 6 4.8593 3.2590 2.6251 10 1 5.2838 4.2105 2.3048 11 6 3.4306 3.4806 3.1258 12 6 5.7107 2.6753 3.7545 13 6 7.1440 2.5716 3.3009 14 1 7.4201 2.8898 2.3064 15 6 8.1029 2.0695 4.1550 16 7 7.7666 1.6816 5.3658 17 14 9.8794 1.9403 3.5925 18 1 9.9947 2.4383 2.1982 19 1 10.7414 2.7580 4.4834 20 1 10.3145 0.5217 3.6485 21 6 4.0285 2.8582 0.3770 22 1 -0.3634 -1.0275 0.0005 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 0.5909 2.0274 -1.3997 28 1 1.9924 3.1070 -1.2031 29 1 3.4414 1.3284 -2.2324 30 1 1.9778 0.3611 -2.5325 31 1 2.1866 1.9332 -3.3406 32 1 4.0327 0.8037 -0.4520 33 1 3.0683 1.5012 2.4163 34 1 4.3154 0.2722 1.9263 35 1 3.4206 4.2993 3.8453 36 1 2.7850 3.7292 2.2835 37 1 3.0685 2.5712 3.6052 38 1 5.6519 3.3257 4.6272 39 1 5.3392 1.6840 4.0143 40 1 8.4411 1.3288 5.9669 41 1 4.6183 3.1838 -0.4800 42 1 3.2855 3.5934 0.6858 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697751378.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:06 Heat of formation + Delta-G solvation = 18.421980 kcal Electronic energy + Delta-G solvation = -18275.212152 eV Core-core repulsion = 15676.622825 eV Total energy + Delta-G solvation = -2598.589327 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.52186 -38.38836 -35.46986 -33.60390 -32.20080 -30.00309 -29.21674 -27.21826 -26.73058 -24.97856 -24.56903 -22.15810 -20.43879 -19.74769 -18.40625 -17.70134 -16.98552 -16.53376 -16.22623 -15.82714 -15.40425 -14.64490 -14.51212 -14.37890 -13.94719 -13.88190 -13.71044 -13.29805 -13.04375 -12.96839 -12.70845 -12.57066 -12.44517 -12.36398 -12.29419 -12.04936 -12.02001 -11.54330 -11.37251 -11.29947 -11.13046 -10.99329 -10.50888 -9.37048 -9.20923 -8.12105 -6.17721 1.39832 1.40509 1.54210 2.46004 2.88771 3.20252 3.32235 3.49304 4.04475 4.12292 4.15701 4.28493 4.30394 4.39289 4.40289 4.48323 4.53530 4.60974 4.64628 4.69557 4.74087 4.83807 4.90141 4.95829 5.01941 5.11912 5.15676 5.18113 5.20376 5.28726 5.32824 5.43882 5.48479 5.65111 5.78656 5.91688 6.19552 6.22969 6.29328 6.48867 6.96251 7.48385 9.00394 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.033766 B = 0.005400 C = 0.005216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.033280 B = 5183.641856 C = 5366.934703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.044 3.956 3 N -0.531 5.531 4 C 0.047 3.953 5 C -0.187 4.187 6 C 0.070 3.930 7 C 0.008 3.992 8 N -0.482 5.482 9 C 0.063 3.937 10 H 0.062 0.938 11 C -0.169 4.169 12 C 0.042 3.958 13 C -0.504 4.504 14 H 0.056 0.944 15 C -0.006 4.006 16 N -0.940 5.940 17 Si 0.959 3.041 18 H -0.266 1.266 19 H -0.279 1.279 20 H -0.282 1.282 21 C 0.012 3.988 22 H 0.067 0.933 23 H 0.055 0.945 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.040 0.960 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.044 0.956 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.052 0.948 38 H -0.008 1.008 39 H -0.012 1.012 40 H 0.259 0.741 41 H 0.083 0.917 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.020 -0.612 -14.270 20.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.084 4.084 3 N -0.256 5.256 4 C -0.081 4.081 5 C -0.245 4.245 6 C -0.039 4.039 7 C -0.121 4.121 8 N -0.204 5.204 9 C -0.047 4.047 10 H 0.080 0.920 11 C -0.228 4.228 12 C 0.004 3.996 13 C -0.542 4.542 14 H 0.074 0.926 15 C -0.202 4.202 16 N -0.583 5.583 17 Si 0.785 3.215 18 H -0.190 1.190 19 H -0.205 1.205 20 H -0.208 1.208 21 C -0.117 4.117 22 H 0.086 0.914 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.058 0.942 27 H 0.107 0.893 28 H 0.093 0.907 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.071 0.929 38 H 0.010 0.990 39 H 0.006 0.994 40 H 0.068 0.932 41 H 0.101 0.899 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.474 -0.569 -13.824 20.023 hybrid contribution 0.882 -0.457 -0.072 0.996 sum -13.592 -1.026 -13.896 19.465 Atomic orbital electron populations 1.21732 0.93540 1.02137 1.02339 1.22114 0.96957 0.88739 1.00591 1.62523 1.11561 1.16606 1.34913 1.22225 1.01047 0.98303 0.86481 1.22359 1.00646 1.01537 0.99977 1.23266 0.88201 0.96913 0.95517 1.24041 0.94657 0.96416 0.96951 1.68710 1.37962 1.07723 1.06032 1.21990 0.94701 0.95502 0.92461 0.91950 1.22392 0.97075 1.01509 1.01776 1.18921 0.94231 0.94009 0.92395 1.21532 0.93928 1.39680 0.99055 0.92624 1.25894 1.03451 0.95765 0.95093 1.70108 1.34978 1.45233 1.07932 0.85475 0.79892 0.77586 0.78529 1.19001 1.20493 1.20815 1.24041 0.95733 0.96138 0.95802 0.91373 0.92632 0.91904 0.92044 0.94228 0.89268 0.90717 0.93654 0.92461 0.90956 0.91612 0.89453 0.92406 0.92304 0.90631 0.92892 0.98998 0.99355 0.93195 0.89869 0.89644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.84 71.98 0.71 -1.54 16 2 C 0.04 0.89 5.44 86.30 0.47 1.36 16 3 N -0.53 -12.00 4.66 -875.42 -4.08 -16.08 16 4 C 0.05 0.85 5.69 86.30 0.49 1.34 16 5 C -0.19 -3.16 9.28 71.98 0.67 -2.49 16 6 C 0.07 1.95 2.54 46.48 0.12 2.06 16 7 C 0.01 0.29 6.66 86.40 0.58 0.87 16 8 N -0.48 -18.99 5.91 -883.00 -5.22 -24.21 16 9 C 0.06 2.65 2.39 44.92 0.11 2.76 16 10 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 11 C -0.17 -5.83 7.91 71.98 0.57 -5.26 16 12 C 0.04 2.27 4.53 29.85 0.14 2.40 16 13 C -0.50 -29.73 8.84 25.60 0.23 -29.51 16 14 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 15 C -0.01 -0.37 5.46 84.65 0.46 0.10 16 16 N -0.94 -59.15 13.29 21.45 0.28 -58.87 16 17 Si 0.96 46.57 29.54 68.60 2.03 48.60 16 18 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 19 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 20 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 21 C 0.01 0.34 6.42 86.40 0.55 0.90 16 22 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.06 0.88 6.48 -2.39 -0.02 0.87 16 25 H 0.06 1.41 7.74 -2.38 -0.02 1.39 16 26 H 0.04 0.77 6.22 -2.39 -0.01 0.76 16 27 H 0.09 1.36 6.32 -2.39 -0.02 1.35 16 28 H 0.07 1.36 7.30 -2.39 -0.02 1.34 16 29 H 0.04 0.91 6.43 -2.39 -0.02 0.89 16 30 H 0.06 0.94 6.62 -2.39 -0.02 0.92 16 31 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.07 1.90 6.98 -2.39 -0.02 1.89 16 33 H 0.09 3.01 5.03 -2.39 -0.01 3.00 16 34 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 35 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.08 2.22 5.83 -2.39 -0.01 2.21 16 37 H 0.05 1.87 6.33 -2.39 -0.02 1.86 16 38 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 39 H -0.01 -0.71 7.83 -2.39 -0.02 -0.73 16 40 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 41 H 0.08 2.35 8.14 -2.39 -0.02 2.34 16 42 H 0.09 2.37 5.79 -2.39 -0.01 2.35 16 Total: -1.00 -66.06 315.81 -0.94 -66.99 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: 0.97 Total: 10.58 kcal Atomic # 6 Polarization: -32.10 SS G_CDS: 5.09 Total: -27.01 kcal Atomic # 7 Polarization: -90.14 SS G_CDS: -9.02 Total: -99.16 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -66.06 -0.94 -66.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697751378.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.415 kcal (2) G-P(sol) polarization free energy of solvation -66.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds