Wall clock time and date at job start Mon Mar 30 2020 03:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09001 * 109.46779 * 2 1 4 4 C 1.50701 * 109.46835 * 240.00205 * 2 1 3 5 5 H 1.08004 * 119.99949 * 243.21427 * 4 2 1 6 6 C 1.37878 * 120.00048 * 63.49103 * 4 2 1 7 7 N 1.31521 * 120.00025 * 355.86422 * 6 4 2 8 8 Si 1.86797 * 120.00147 * 175.86041 * 6 4 2 9 9 H 1.48501 * 109.47155 * 94.99544 * 8 6 4 10 10 H 1.48501 * 109.47325 * 214.99572 * 8 6 4 11 11 H 1.48500 * 109.47172 * 334.99927 * 8 6 4 12 12 N 1.46898 * 109.46928 * 120.00281 * 2 1 3 13 13 C 1.46900 * 111.00077 * 58.95780 * 12 2 1 14 14 C 1.46894 * 111.00282 * 294.99626 * 12 2 1 15 15 H 1.09001 * 109.46811 * 66.18336 * 14 12 2 16 16 C 1.53001 * 109.47474 * 306.18673 * 14 12 2 17 17 C 1.52996 * 109.47461 * 186.18303 * 14 12 2 18 18 H 1.08998 * 109.50476 * 299.84573 * 17 14 12 19 19 C 1.53117 * 109.50117 * 59.92426 * 17 14 12 20 20 C 1.53124 * 109.16031 * 177.55808 * 19 17 14 21 21 C 1.53039 * 109.30747 * 302.40672 * 20 19 17 22 22 N 1.46843 * 109.52543 * 59.15564 * 21 20 19 23 23 C 1.46843 * 111.19791 * 298.25801 * 22 21 20 24 24 H 1.09002 * 109.46990 * 173.86985 * 1 2 3 25 25 H 1.09003 * 109.46952 * 293.86479 * 1 2 3 26 26 H 1.08993 * 109.46971 * 53.87155 * 1 2 3 27 27 H 0.96996 * 119.99989 * 179.97438 * 7 6 4 28 28 H 1.08993 * 109.47406 * 61.95700 * 13 12 2 29 29 H 1.09000 * 109.46985 * 181.96272 * 13 12 2 30 30 H 1.08999 * 109.47155 * 301.95639 * 13 12 2 31 31 H 1.08999 * 109.47057 * 300.00142 * 16 14 12 32 32 H 1.09000 * 109.46777 * 59.99282 * 16 14 12 33 33 H 1.08997 * 109.47336 * 179.97438 * 16 14 12 34 34 H 1.09003 * 109.52180 * 297.49823 * 19 17 14 35 35 H 1.08994 * 109.52462 * 57.69361 * 19 17 14 36 36 H 1.09000 * 109.51005 * 182.44546 * 20 19 17 37 37 H 1.09000 * 109.50279 * 62.35964 * 20 19 17 38 38 H 1.09002 * 109.46063 * 299.13590 * 21 20 19 39 39 H 1.09006 * 109.46412 * 179.17441 * 21 20 19 40 40 H 1.00903 * 111.00094 * 62.36127 * 22 21 20 41 41 H 1.08999 * 109.46453 * 301.72175 * 23 22 21 42 42 H 1.09000 * 109.46129 * 181.75685 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6098 -1.6178 -1.1323 6 6 1.7597 -0.1988 -2.4815 7 7 0.9933 0.8630 -2.6050 8 14 2.4786 -1.0135 -4.0009 9 1 1.4908 -1.9680 -4.5651 10 1 2.7991 0.0237 -5.0141 11 1 3.7176 -1.7441 -3.6314 12 7 2.0197 -0.6926 1.1994 13 6 1.5284 -2.0762 1.2458 14 6 1.6488 0.0390 2.4180 15 1 0.5654 0.0228 2.5359 16 6 2.1283 1.4879 2.3090 17 6 2.3038 -0.6250 3.6308 18 1 1.9604 -1.6564 3.7107 19 6 3.8258 -0.6043 3.4650 20 6 4.4753 -1.2153 4.7098 21 6 4.0311 -0.4331 5.9479 22 7 2.5680 -0.4844 6.0620 23 6 1.9226 0.1401 4.9002 24 1 -0.3633 -1.0218 -0.1097 25 1 -0.3633 0.4158 0.9398 26 1 -0.3633 0.6059 -0.8300 27 1 0.8018 1.2231 -3.4850 28 1 1.9050 -2.6246 0.3825 29 1 1.8770 -2.5550 2.1609 30 1 0.4386 -2.0755 1.2287 31 1 3.2118 1.5041 2.1910 32 1 1.6617 1.9609 1.4450 33 1 1.8527 2.0308 3.2131 34 1 4.1044 -1.1853 2.5858 35 1 4.1653 0.4245 3.3455 36 1 5.5601 -1.1639 4.6168 37 1 4.1673 -2.2563 4.8073 38 1 4.3522 0.6045 5.8565 39 1 4.4805 -0.8750 6.8373 40 1 2.2481 -1.4332 6.1869 41 1 2.2534 1.1750 4.8137 42 1 0.8405 0.1144 5.0285 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699676372.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:09 Heat of formation + Delta-G solvation = -2.163606 kcal Electronic energy + Delta-G solvation = -18770.312910 eV Core-core repulsion = 16170.830925 eV Total energy + Delta-G solvation = -2599.481985 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.43253 -37.04240 -33.40097 -31.68363 -31.28545 -28.94989 -28.21003 -25.21619 -24.31442 -23.81846 -23.20644 -21.26566 -19.82087 -17.93714 -16.33882 -15.80312 -15.42791 -14.84831 -14.56011 -14.45185 -14.07408 -13.44650 -13.04240 -12.93169 -12.46429 -12.19925 -12.08461 -11.63857 -11.45781 -11.31759 -11.13390 -11.00245 -10.88723 -10.76203 -10.69188 -10.55982 -10.44874 -10.21916 -10.00881 -9.75477 -9.50042 -8.76002 -8.37171 -8.22943 -7.04844 -5.99375 -4.01488 3.30896 3.38154 3.42587 4.36532 4.43052 4.88844 4.91438 5.08861 5.19369 5.33198 5.41852 5.50892 5.52417 5.69226 5.76579 5.89381 5.93547 6.02368 6.04699 6.17882 6.23246 6.27091 6.35322 6.43771 6.58954 6.63516 6.70869 6.74426 6.83977 6.89733 6.93410 7.06005 7.18243 7.39697 7.56067 7.73402 7.86493 8.18553 8.42690 8.66683 9.04522 9.63054 11.08447 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.039958 B = 0.006043 C = 0.005731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.567330 B = 4632.486632 C = 4884.621806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.207 3.793 3 H 0.048 0.952 4 C -0.498 4.498 5 H 0.061 0.939 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.894 3.106 9 H -0.284 1.284 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.527 5.527 13 C 0.034 3.966 14 C 0.087 3.913 15 H 0.031 0.969 16 C -0.148 4.148 17 C -0.113 4.113 18 H 0.064 0.936 19 C -0.105 4.105 20 C -0.159 4.159 21 C 0.057 3.943 22 N -0.687 5.687 23 C 0.058 3.942 24 H 0.029 0.971 25 H 0.007 0.993 26 H 0.080 0.920 27 H 0.259 0.741 28 H 0.069 0.931 29 H 0.041 0.959 30 H 0.016 0.984 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.047 0.953 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.336 0.664 41 H 0.076 0.924 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.996 -2.222 13.478 13.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.101 3.899 3 H 0.065 0.935 4 C -0.537 4.537 5 H 0.079 0.921 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.722 3.278 9 H -0.210 1.210 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.251 5.251 13 C -0.115 4.115 14 C -0.022 4.022 15 H 0.049 0.951 16 C -0.205 4.205 17 C -0.134 4.134 18 H 0.082 0.918 19 C -0.142 4.142 20 C -0.198 4.198 21 C -0.073 4.073 22 N -0.315 5.315 23 C -0.071 4.071 24 H 0.049 0.951 25 H 0.026 0.974 26 H 0.099 0.901 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.059 0.941 30 H 0.034 0.966 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.153 0.847 41 H 0.094 0.906 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.408 -1.527 13.717 14.217 hybrid contribution -0.488 -1.130 -1.692 2.093 sum 2.920 -2.657 12.025 12.657 Atomic orbital electron populations 1.22379 1.01213 1.00028 0.99114 1.19385 0.89461 0.95099 0.85980 0.93457 1.21139 1.32815 1.09876 0.89868 0.92134 1.24919 0.95244 0.95202 0.98924 1.69913 1.37061 1.23113 1.23333 0.86551 0.79452 0.78986 0.82809 1.21004 1.21286 1.19882 1.62386 1.59258 1.01520 1.01918 1.22230 0.97145 0.91648 1.00457 1.21429 0.96185 0.93919 0.90686 0.95140 1.21993 1.02102 0.95412 1.01021 1.21885 0.96616 0.99505 0.95348 0.91807 1.21513 0.94043 1.01502 0.97150 1.22313 1.00769 0.99704 0.97045 1.22005 0.88168 1.00548 0.96582 1.60757 1.06044 1.23951 1.40713 1.22163 0.98643 0.98814 0.87528 0.95149 0.97390 0.90104 0.93121 0.91211 0.94060 0.96600 0.92018 0.91751 0.93436 0.90354 0.91907 0.91940 0.92583 0.91151 0.91437 0.84730 0.90571 0.91295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.06 8.17 37.16 0.30 -3.75 16 2 C 0.21 5.09 1.92 -68.86 -0.13 4.96 16 3 H 0.05 1.27 5.92 -51.93 -0.31 0.96 16 4 C -0.50 -13.53 7.98 -34.44 -0.27 -13.80 16 5 H 0.06 1.65 6.63 -52.48 -0.35 1.31 16 6 C 0.06 1.60 5.35 -17.82 -0.10 1.50 16 7 N -0.89 -25.47 11.49 55.43 0.64 -24.83 16 8 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.53 -10.91 3.89 -228.30 -0.89 -11.80 16 13 C 0.03 0.66 8.72 60.06 0.52 1.18 16 14 C 0.09 1.53 1.46 -67.72 -0.10 1.43 16 15 H 0.03 0.57 6.62 -51.93 -0.34 0.23 16 16 C -0.15 -2.52 8.06 37.16 0.30 -2.22 16 17 C -0.11 -1.63 1.87 -90.54 -0.17 -1.80 16 18 H 0.06 0.95 6.34 -51.93 -0.33 0.62 16 19 C -0.10 -1.49 4.80 -26.61 -0.13 -1.62 16 20 C -0.16 -1.85 6.08 -26.65 -0.16 -2.01 16 21 C 0.06 0.61 6.55 -3.84 -0.03 0.59 16 22 N -0.69 -7.96 6.87 -113.82 -0.78 -8.74 16 23 C 0.06 0.74 5.50 -3.84 -0.02 0.72 16 24 H 0.03 0.72 6.69 -51.93 -0.35 0.38 16 25 H 0.01 0.16 6.38 -51.93 -0.33 -0.17 16 26 H 0.08 2.15 6.37 -51.93 -0.33 1.82 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 28 H 0.07 1.46 6.53 -51.93 -0.34 1.12 16 29 H 0.04 0.70 6.08 -51.93 -0.32 0.38 16 30 H 0.02 0.31 6.31 -51.93 -0.33 -0.02 16 31 H 0.06 1.06 6.38 -51.93 -0.33 0.73 16 32 H 0.06 1.24 6.22 -51.93 -0.32 0.92 16 33 H 0.05 0.69 6.41 -51.93 -0.33 0.35 16 34 H 0.08 1.30 7.69 -51.93 -0.40 0.90 16 35 H 0.06 0.93 6.32 -51.93 -0.33 0.60 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.34 3.57 8.86 -39.29 -0.35 3.22 16 41 H 0.08 1.00 6.38 -51.93 -0.33 0.67 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 300.72 15.07 4.53 4.53 Total: -1.00 -27.48 300.72 -8.46 -35.95 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -6.96 Total: 3.34 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: 0.02 Total: -14.82 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: -1.03 Total: -45.37 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -27.48 -8.46 -35.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699676372.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.782 kcal (2) G-P(sol) polarization free energy of solvation -27.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds