Wall clock time and date at job start Mon Mar 30 2020 03:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09001 * 109.46779 * 2 1 4 4 C 1.50701 * 109.46835 * 240.00205 * 2 1 3 5 5 H 1.08004 * 119.99949 * 243.21427 * 4 2 1 6 6 C 1.37878 * 120.00048 * 63.49103 * 4 2 1 7 7 N 1.31521 * 120.00025 * 355.86422 * 6 4 2 8 8 Si 1.86797 * 120.00147 * 175.86041 * 6 4 2 9 9 H 1.48501 * 109.47155 * 94.99544 * 8 6 4 10 10 H 1.48501 * 109.47325 * 214.99572 * 8 6 4 11 11 H 1.48500 * 109.47172 * 334.99927 * 8 6 4 12 12 N 1.46898 * 109.46928 * 120.00281 * 2 1 3 13 13 C 1.46900 * 111.00077 * 58.95780 * 12 2 1 14 14 C 1.46894 * 111.00282 * 294.99626 * 12 2 1 15 15 H 1.09001 * 109.46811 * 66.18336 * 14 12 2 16 16 C 1.53001 * 109.47474 * 306.18673 * 14 12 2 17 17 C 1.52996 * 109.47461 * 186.18303 * 14 12 2 18 18 H 1.08998 * 109.50476 * 299.84573 * 17 14 12 19 19 C 1.53117 * 109.50117 * 59.92426 * 17 14 12 20 20 C 1.53124 * 109.16031 * 177.55808 * 19 17 14 21 21 C 1.53039 * 109.30747 * 302.40672 * 20 19 17 22 22 N 1.46843 * 109.52543 * 59.15564 * 21 20 19 23 23 C 1.46843 * 111.19791 * 298.25801 * 22 21 20 24 24 H 1.09002 * 109.46990 * 173.86985 * 1 2 3 25 25 H 1.09003 * 109.46952 * 293.86479 * 1 2 3 26 26 H 1.08993 * 109.46971 * 53.87155 * 1 2 3 27 27 H 0.96996 * 119.99989 * 179.97438 * 7 6 4 28 28 H 1.08993 * 109.47406 * 61.95700 * 13 12 2 29 29 H 1.09000 * 109.46985 * 181.96272 * 13 12 2 30 30 H 1.08999 * 109.47155 * 301.95639 * 13 12 2 31 31 H 1.08999 * 109.47057 * 300.00142 * 16 14 12 32 32 H 1.09000 * 109.46777 * 59.99282 * 16 14 12 33 33 H 1.08997 * 109.47336 * 179.97438 * 16 14 12 34 34 H 1.09003 * 109.52180 * 297.49823 * 19 17 14 35 35 H 1.08994 * 109.52462 * 57.69361 * 19 17 14 36 36 H 1.09000 * 109.51005 * 182.44546 * 20 19 17 37 37 H 1.09000 * 109.50279 * 62.35964 * 20 19 17 38 38 H 1.09002 * 109.46063 * 299.13590 * 21 20 19 39 39 H 1.09006 * 109.46412 * 179.17441 * 21 20 19 40 40 H 1.00903 * 111.00094 * 62.36127 * 22 21 20 41 41 H 1.08999 * 109.46453 * 301.72175 * 23 22 21 42 42 H 1.09000 * 109.46129 * 181.75685 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6098 -1.6178 -1.1323 6 6 1.7597 -0.1988 -2.4815 7 7 0.9933 0.8630 -2.6050 8 14 2.4786 -1.0135 -4.0009 9 1 1.4908 -1.9680 -4.5651 10 1 2.7991 0.0237 -5.0141 11 1 3.7176 -1.7441 -3.6314 12 7 2.0197 -0.6926 1.1994 13 6 1.5284 -2.0762 1.2458 14 6 1.6488 0.0390 2.4180 15 1 0.5654 0.0228 2.5359 16 6 2.1283 1.4879 2.3090 17 6 2.3038 -0.6250 3.6308 18 1 1.9604 -1.6564 3.7107 19 6 3.8258 -0.6043 3.4650 20 6 4.4753 -1.2153 4.7098 21 6 4.0311 -0.4331 5.9479 22 7 2.5680 -0.4844 6.0620 23 6 1.9226 0.1401 4.9002 24 1 -0.3633 -1.0218 -0.1097 25 1 -0.3633 0.4158 0.9398 26 1 -0.3633 0.6059 -0.8300 27 1 0.8018 1.2231 -3.4850 28 1 1.9050 -2.6246 0.3825 29 1 1.8770 -2.5550 2.1609 30 1 0.4386 -2.0755 1.2287 31 1 3.2118 1.5041 2.1910 32 1 1.6617 1.9609 1.4450 33 1 1.8527 2.0308 3.2131 34 1 4.1044 -1.1853 2.5858 35 1 4.1653 0.4245 3.3455 36 1 5.5601 -1.1639 4.6168 37 1 4.1673 -2.2563 4.8073 38 1 4.3522 0.6045 5.8565 39 1 4.4805 -0.8750 6.8373 40 1 2.2481 -1.4332 6.1869 41 1 2.2534 1.1750 4.8137 42 1 0.8405 0.1144 5.0285 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699676372.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:08 Heat of formation + Delta-G solvation = -20.297922 kcal Electronic energy + Delta-G solvation = -18771.099273 eV Core-core repulsion = 16170.830925 eV Total energy + Delta-G solvation = -2600.268348 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.69813 -38.48985 -35.15172 -33.32567 -32.29868 -30.61037 -29.68512 -27.29148 -25.93148 -25.06102 -24.34141 -22.51122 -21.26167 -19.42835 -18.31330 -17.08933 -16.81692 -16.46922 -15.98062 -15.67992 -15.38674 -14.93480 -14.72279 -14.37701 -13.84815 -13.44677 -13.36485 -13.27789 -12.96867 -12.84966 -12.79179 -12.63023 -12.49435 -12.37624 -12.16025 -12.00550 -11.97594 -11.74957 -11.62993 -11.03838 -10.99454 -10.77970 -10.46284 -9.21043 -8.74506 -8.10026 -6.18881 1.40207 1.42045 1.52687 2.43026 3.19374 3.37678 3.46587 3.80760 3.97712 4.19899 4.23244 4.37454 4.42312 4.50473 4.59112 4.63054 4.69432 4.75024 4.80450 4.83766 4.90533 4.94912 5.04740 5.06625 5.11899 5.14694 5.18716 5.21763 5.34634 5.39898 5.51704 5.59121 5.60312 5.75940 5.80519 6.11908 6.23883 6.52909 6.56401 6.84265 6.96114 7.49844 8.96712 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.039958 B = 0.006043 C = 0.005731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.567330 B = 4632.486632 C = 4884.621806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.213 3.787 3 H 0.021 0.979 4 C -0.513 4.513 5 H 0.054 0.946 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.955 3.045 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.270 1.270 12 N -0.533 5.533 13 C 0.040 3.960 14 C 0.087 3.913 15 H 0.023 0.977 16 C -0.141 4.141 17 C -0.101 4.101 18 H 0.064 0.936 19 C -0.102 4.102 20 C -0.151 4.151 21 C 0.059 3.941 22 N -0.686 5.686 23 C 0.066 3.934 24 H 0.025 0.975 25 H 0.025 0.975 26 H 0.052 0.948 27 H 0.260 0.740 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.011 0.989 31 H 0.056 0.944 32 H 0.034 0.966 33 H 0.076 0.924 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.344 0.656 41 H 0.074 0.926 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.601 -3.021 15.133 15.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.105 3.895 3 H 0.039 0.961 4 C -0.551 4.551 5 H 0.072 0.928 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.782 3.218 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.195 1.195 12 N -0.256 5.256 13 C -0.109 4.109 14 C -0.023 4.023 15 H 0.041 0.959 16 C -0.198 4.198 17 C -0.122 4.122 18 H 0.083 0.917 19 C -0.140 4.140 20 C -0.190 4.190 21 C -0.071 4.071 22 N -0.314 5.314 23 C -0.064 4.064 24 H 0.044 0.956 25 H 0.044 0.956 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.029 0.971 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.094 0.906 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.162 0.838 41 H 0.092 0.908 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.017 -2.340 15.394 16.080 hybrid contribution -0.665 -0.873 -2.155 2.418 sum 3.352 -3.213 13.239 14.029 Atomic orbital electron populations 1.22168 1.01014 0.99147 0.98842 1.19118 0.89412 0.93820 0.87118 0.96128 1.21426 1.32707 1.09808 0.91201 0.92789 1.25664 0.95591 0.95808 1.01710 1.70038 1.37981 1.24245 1.23889 0.85583 0.78790 0.78099 0.79366 1.20453 1.20982 1.19497 1.62290 1.59346 1.02098 1.01914 1.22180 0.96700 0.90895 1.01075 1.21541 0.96078 0.94148 0.90485 0.95867 1.21927 1.01471 0.95337 1.01094 1.21800 0.96376 0.99397 0.94623 0.91740 1.21444 0.94124 1.00846 0.97581 1.22246 1.01070 0.99773 0.95920 1.22041 0.87682 1.00471 0.96858 1.60757 1.06483 1.24576 1.39569 1.22059 0.99073 0.98432 0.86853 0.95575 0.95606 0.92864 0.93135 0.93068 0.91168 0.97095 0.92473 0.94672 0.90568 0.93039 0.92627 0.91097 0.92132 0.91385 0.89427 0.83823 0.90788 0.90825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.49 8.17 71.99 0.59 -6.90 16 2 C 0.21 10.69 1.92 44.17 0.08 10.78 16 3 H 0.02 1.16 5.92 -2.39 -0.01 1.15 16 4 C -0.51 -28.33 7.98 25.60 0.20 -28.13 16 5 H 0.05 2.99 6.63 -2.91 -0.02 2.97 16 6 C 0.01 0.59 5.35 84.65 0.45 1.04 16 7 N -0.92 -53.48 11.49 21.45 0.25 -53.23 16 8 Si 0.96 44.26 29.54 68.60 2.03 46.28 16 9 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 10 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 12 N -0.53 -22.15 3.89 -876.20 -3.41 -25.56 16 13 C 0.04 1.53 8.72 127.69 1.11 2.65 16 14 C 0.09 2.97 1.46 44.92 0.07 3.03 16 15 H 0.02 0.84 6.62 -2.39 -0.02 0.83 16 16 C -0.14 -4.77 8.06 71.98 0.58 -4.19 16 17 C -0.10 -2.73 1.87 -10.74 -0.02 -2.75 16 18 H 0.06 1.75 6.34 -2.39 -0.02 1.73 16 19 C -0.10 -2.77 4.80 30.67 0.15 -2.62 16 20 C -0.15 -3.11 6.08 30.65 0.19 -2.93 16 21 C 0.06 1.09 6.55 86.33 0.57 1.65 16 22 N -0.69 -13.69 6.87 -514.01 -3.53 -17.22 16 23 C 0.07 1.51 5.50 86.33 0.48 1.98 16 24 H 0.03 1.25 6.69 -2.39 -0.02 1.24 16 25 H 0.03 1.13 6.38 -2.39 -0.02 1.11 16 26 H 0.05 2.90 6.37 -2.39 -0.02 2.89 16 27 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 28 H 0.05 2.14 6.53 -2.39 -0.02 2.13 16 29 H 0.07 2.27 6.08 -2.39 -0.01 2.26 16 30 H 0.01 0.42 6.31 -2.39 -0.02 0.40 16 31 H 0.06 1.96 6.38 -2.39 -0.02 1.95 16 32 H 0.03 1.38 6.22 -2.39 -0.01 1.36 16 33 H 0.08 2.10 6.41 -2.39 -0.02 2.08 16 34 H 0.05 1.67 7.69 -2.39 -0.02 1.65 16 35 H 0.06 1.58 6.32 -2.39 -0.02 1.56 16 36 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 40 H 0.34 6.12 8.86 -89.69 -0.79 5.32 16 41 H 0.07 1.74 6.38 -2.39 -0.02 1.73 16 42 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -59.05 300.72 -0.02 -59.07 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 0.21 Total: 17.03 kcal Atomic # 6 Polarization: -30.82 SS G_CDS: 4.44 Total: -26.38 kcal Atomic # 7 Polarization: -89.31 SS G_CDS: -6.69 Total: -96.00 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -59.05 -0.02 -59.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699676372.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.773 kcal (2) G-P(sol) polarization free energy of solvation -59.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds