Wall clock time and date at job start Mon Mar 30 2020 03:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.46789 * 2 1 4 4 C 1.50699 * 109.47321 * 240.00056 * 2 1 3 5 5 H 1.07998 * 120.00016 * 243.32951 * 4 2 1 6 6 C 1.37878 * 119.99544 * 63.32182 * 4 2 1 7 7 N 1.31516 * 119.99837 * 200.85836 * 6 4 2 8 8 Si 1.86798 * 120.00623 * 20.86241 * 6 4 2 9 9 H 1.48505 * 109.46865 * 87.23126 * 8 6 4 10 10 H 1.48490 * 109.47499 * 207.23547 * 8 6 4 11 11 H 1.48502 * 109.46808 * 327.23785 * 8 6 4 12 12 N 1.46896 * 109.47330 * 119.99746 * 2 1 3 13 13 C 1.46903 * 110.99843 * 61.49203 * 12 2 1 14 14 C 1.46898 * 111.00332 * 185.44367 * 12 2 1 15 15 H 1.09005 * 109.47202 * 299.85328 * 14 12 2 16 16 C 1.52999 * 109.47132 * 59.85114 * 14 12 2 17 17 C 1.53002 * 109.47389 * 179.85546 * 14 12 2 18 18 H 1.08999 * 109.53398 * 59.89869 * 17 14 12 19 19 C 1.53111 * 109.50288 * 180.02562 * 17 14 12 20 20 C 1.53123 * 109.15949 * 177.59415 * 19 17 14 21 21 C 1.53043 * 109.30902 * 302.32251 * 20 19 17 22 22 N 1.46932 * 109.47779 * 59.16136 * 21 20 19 23 23 C 1.46846 * 111.21768 * 298.28239 * 22 21 20 24 24 H 1.09002 * 109.47287 * 293.98896 * 1 2 3 25 25 H 1.09000 * 109.47622 * 53.98747 * 1 2 3 26 26 H 1.09000 * 109.47467 * 173.98764 * 1 2 3 27 27 H 0.96998 * 120.00514 * 180.02562 * 7 6 4 28 28 H 1.08992 * 109.47471 * 183.95563 * 13 12 2 29 29 H 1.09010 * 109.47006 * 303.95553 * 13 12 2 30 30 H 1.08996 * 109.47330 * 63.95371 * 13 12 2 31 31 H 1.08996 * 109.47149 * 174.86921 * 16 14 12 32 32 H 1.09001 * 109.47127 * 294.87108 * 16 14 12 33 33 H 1.09001 * 109.47157 * 54.87062 * 16 14 12 34 34 H 1.08998 * 109.52871 * 57.68763 * 19 17 14 35 35 H 1.08995 * 109.52557 * 297.49716 * 19 17 14 36 36 H 1.08996 * 109.50720 * 62.28736 * 20 19 17 37 37 H 1.08997 * 109.50230 * 182.36564 * 20 19 17 38 38 H 1.09001 * 109.46132 * 179.21273 * 21 20 19 39 39 H 1.09000 * 109.46116 * 299.18587 * 21 20 19 40 40 H 1.00901 * 110.98369 * 62.38189 * 22 21 20 41 41 H 1.08999 * 109.46320 * 301.72544 * 23 22 21 42 42 H 1.09000 * 109.46096 * 181.75515 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6081 -1.6188 -1.1323 6 6 1.7567 -0.2006 -2.4815 7 7 1.8161 -0.9821 -3.5377 8 14 1.2989 1.5999 -2.6766 9 1 2.5337 2.4111 -2.8264 10 1 0.4478 1.7665 -3.8819 11 1 0.5514 2.0533 -1.4762 12 7 2.0197 -0.6924 1.1994 13 6 1.5780 -2.0934 1.2157 14 6 3.4823 -0.6004 1.3002 15 1 3.9367 -1.0614 0.4232 16 6 3.8968 0.8705 1.3756 17 6 3.9535 -1.3284 2.5607 18 1 3.6572 -2.3760 2.5088 19 6 5.4779 -1.2323 2.6668 20 6 5.9354 -1.9109 3.9610 21 6 5.2446 -1.2448 5.1532 22 7 3.7877 -1.3639 5.0045 23 6 3.3194 -0.6790 3.7929 24 1 -0.3634 0.4178 0.9389 25 1 -0.3634 0.6042 -0.8312 26 1 -0.3634 -1.0220 -0.1076 27 1 1.6225 -0.6235 -4.4179 28 1 1.8944 -2.5633 2.1468 29 1 0.4913 -2.1327 1.1398 30 1 2.0205 -2.6237 0.3724 31 1 4.9719 0.9369 1.5418 32 1 3.6423 1.3681 0.4398 33 1 3.3713 1.3543 2.1990 34 1 5.7769 -0.1842 2.6797 35 1 5.9347 -1.7318 1.8125 36 1 5.6708 -2.9678 3.9310 37 1 7.0158 -1.8090 4.0630 38 1 5.5578 -1.7352 6.0749 39 1 5.5207 -0.1910 5.1906 40 1 3.5023 -2.3317 5.0060 41 1 3.6044 0.3722 3.8368 42 1 2.2342 -0.7584 3.7273 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699676373.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:10 Heat of formation + Delta-G solvation = 0.084429 kcal Electronic energy + Delta-G solvation = -18903.675507 eV Core-core repulsion = 16304.291004 eV Total energy + Delta-G solvation = -2599.384502 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.41383 -37.00402 -33.37418 -31.96069 -31.20964 -29.24122 -28.67314 -25.15087 -24.24124 -23.66775 -23.37018 -21.06617 -19.55896 -18.42083 -16.64876 -15.81624 -15.29926 -14.90164 -14.60792 -14.55103 -14.15567 -13.35446 -12.99255 -12.72629 -12.56440 -12.34392 -12.10317 -12.05449 -11.66658 -11.46565 -11.33207 -11.08801 -10.95052 -10.81146 -10.69532 -10.55351 -10.37822 -9.94859 -9.85725 -9.74046 -9.57906 -9.28809 -8.44083 -8.15497 -7.08352 -6.16255 -4.07210 3.26417 3.35983 3.38969 4.40238 4.46462 4.76062 4.94815 5.04317 5.16497 5.20108 5.32648 5.51184 5.60802 5.72926 5.76948 5.94686 5.96996 5.98823 6.07581 6.15315 6.22167 6.27438 6.36817 6.41734 6.52589 6.56783 6.63497 6.70842 6.74624 6.78866 6.86744 6.95921 7.18546 7.23175 7.31292 7.50954 7.63721 8.16719 8.22646 8.45638 8.92748 9.53940 10.96874 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.037349 B = 0.006702 C = 0.006537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.513886 B = 4177.011210 C = 4282.111729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.177 3.823 3 H 0.036 0.964 4 C -0.550 4.550 5 H 0.072 0.928 6 C 0.082 3.918 7 N -0.887 5.887 8 Si 0.859 3.141 9 H -0.280 1.280 10 H -0.289 1.289 11 H -0.253 1.253 12 N -0.526 5.526 13 C 0.030 3.970 14 C 0.095 3.905 15 H 0.049 0.951 16 C -0.144 4.144 17 C -0.117 4.117 18 H 0.066 0.934 19 C -0.117 4.117 20 C -0.156 4.156 21 C 0.057 3.943 22 N -0.691 5.691 23 C 0.069 3.931 24 H 0.030 0.970 25 H 0.044 0.956 26 H 0.047 0.953 27 H 0.262 0.738 28 H 0.043 0.957 29 H 0.059 0.941 30 H 0.033 0.967 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.335 0.665 41 H 0.071 0.929 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.070 0.111 13.589 14.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.069 3.931 3 H 0.054 0.946 4 C -0.588 4.588 5 H 0.090 0.910 6 C -0.122 4.122 7 N -0.524 5.524 8 Si 0.686 3.314 9 H -0.206 1.206 10 H -0.215 1.215 11 H -0.178 1.178 12 N -0.250 5.250 13 C -0.118 4.118 14 C -0.014 4.014 15 H 0.067 0.933 16 C -0.201 4.201 17 C -0.137 4.137 18 H 0.084 0.916 19 C -0.155 4.155 20 C -0.195 4.195 21 C -0.073 4.073 22 N -0.318 5.318 23 C -0.060 4.060 24 H 0.049 0.951 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.152 0.848 41 H 0.089 0.911 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.686 0.882 14.234 15.012 hybrid contribution 0.523 -0.203 -2.014 2.091 sum 5.210 0.679 12.220 13.302 Atomic orbital electron populations 1.22126 0.98304 1.00525 0.98653 1.19618 0.91685 0.94691 0.87112 0.94582 1.21491 1.35870 1.11521 0.89924 0.90994 1.24895 0.94114 0.97243 0.95924 1.70057 1.48118 1.34871 0.99319 0.87255 0.78796 0.87240 0.78146 1.20585 1.21545 1.17771 1.62497 1.08932 1.13292 1.40268 1.22236 1.00515 0.90221 0.98862 1.21326 0.89528 0.95371 0.95185 0.93264 1.21912 0.99530 0.96529 1.02162 1.21927 0.94534 1.00122 0.97118 0.91613 1.21686 0.95992 1.01004 0.96855 1.22255 1.00499 0.99982 0.96769 1.22005 0.87885 1.00825 0.96576 1.60789 1.11631 1.19580 1.39791 1.22062 1.00601 0.97910 0.85424 0.95060 0.93711 0.93420 0.92785 0.93807 0.92229 0.94864 0.93252 0.92170 0.92552 0.91482 0.92230 0.92384 0.91998 0.91457 0.91237 0.84797 0.91084 0.89445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.30 37.16 0.31 -2.72 16 2 C 0.18 4.06 1.65 -68.87 -0.11 3.94 16 3 H 0.04 0.86 4.78 -51.93 -0.25 0.61 16 4 C -0.55 -14.80 7.50 -34.44 -0.26 -15.06 16 5 H 0.07 2.13 6.07 -52.49 -0.32 1.81 16 6 C 0.08 2.30 5.30 -17.82 -0.09 2.20 16 7 N -0.89 -26.58 13.96 55.43 0.77 -25.81 16 8 Si 0.86 20.93 26.04 -169.99 -4.43 16.51 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.25 -5.86 5.57 56.52 0.31 -5.54 16 12 N -0.53 -10.39 3.88 -228.30 -0.88 -11.28 16 13 C 0.03 0.58 8.45 60.07 0.51 1.08 16 14 C 0.10 1.73 1.66 -67.71 -0.11 1.62 16 15 H 0.05 1.06 6.89 -51.93 -0.36 0.70 16 16 C -0.14 -2.45 8.08 37.16 0.30 -2.15 16 17 C -0.12 -1.71 1.68 -90.54 -0.15 -1.86 16 18 H 0.07 1.01 6.35 -51.93 -0.33 0.68 16 19 C -0.12 -1.54 5.00 -26.61 -0.13 -1.67 16 20 C -0.16 -1.70 6.08 -26.65 -0.16 -1.87 16 21 C 0.06 0.62 6.56 -3.78 -0.02 0.59 16 22 N -0.69 -8.48 6.87 -113.75 -0.78 -9.26 16 23 C 0.07 0.96 5.34 -3.83 -0.02 0.94 16 24 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.04 1.01 5.09 -51.93 -0.26 0.74 16 26 H 0.05 1.04 6.67 -51.93 -0.35 0.70 16 27 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.04 0.72 6.23 -51.93 -0.32 0.39 16 29 H 0.06 1.13 6.27 -51.92 -0.33 0.81 16 30 H 0.03 0.72 6.46 -51.93 -0.34 0.38 16 31 H 0.05 0.74 6.12 -51.93 -0.32 0.42 16 32 H 0.06 1.15 6.57 -51.93 -0.34 0.81 16 33 H 0.06 0.91 6.69 -51.93 -0.35 0.56 16 34 H 0.07 0.87 6.21 -51.93 -0.32 0.55 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.34 3.83 8.86 -39.29 -0.35 3.49 16 41 H 0.07 1.03 6.50 -51.93 -0.34 0.69 16 42 H 0.09 1.35 7.64 -51.93 -0.40 0.95 16 LS Contribution 296.67 15.07 4.47 4.47 Total: -1.00 -28.20 296.67 -7.82 -36.02 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -7.02 Total: 4.31 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: 0.05 Total: -14.96 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: -0.89 Total: -46.35 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.43 Total: 16.51 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.20 -7.82 -36.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699676373.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.101 kcal (2) G-P(sol) polarization free energy of solvation -28.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds