Wall clock time and date at job start Mon Mar 30 2020 03:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.46789 * 2 1 4 4 C 1.50699 * 109.47321 * 240.00056 * 2 1 3 5 5 H 1.07998 * 120.00016 * 243.32951 * 4 2 1 6 6 C 1.37878 * 119.99544 * 63.32182 * 4 2 1 7 7 N 1.31516 * 119.99837 * 200.85836 * 6 4 2 8 8 Si 1.86798 * 120.00623 * 20.86241 * 6 4 2 9 9 H 1.48505 * 109.46865 * 87.23126 * 8 6 4 10 10 H 1.48490 * 109.47499 * 207.23547 * 8 6 4 11 11 H 1.48502 * 109.46808 * 327.23785 * 8 6 4 12 12 N 1.46896 * 109.47330 * 119.99746 * 2 1 3 13 13 C 1.46903 * 110.99843 * 61.49203 * 12 2 1 14 14 C 1.46898 * 111.00332 * 185.44367 * 12 2 1 15 15 H 1.09005 * 109.47202 * 299.85328 * 14 12 2 16 16 C 1.52999 * 109.47132 * 59.85114 * 14 12 2 17 17 C 1.53002 * 109.47389 * 179.85546 * 14 12 2 18 18 H 1.08999 * 109.53398 * 59.89869 * 17 14 12 19 19 C 1.53111 * 109.50288 * 180.02562 * 17 14 12 20 20 C 1.53123 * 109.15949 * 177.59415 * 19 17 14 21 21 C 1.53043 * 109.30902 * 302.32251 * 20 19 17 22 22 N 1.46932 * 109.47779 * 59.16136 * 21 20 19 23 23 C 1.46846 * 111.21768 * 298.28239 * 22 21 20 24 24 H 1.09002 * 109.47287 * 293.98896 * 1 2 3 25 25 H 1.09000 * 109.47622 * 53.98747 * 1 2 3 26 26 H 1.09000 * 109.47467 * 173.98764 * 1 2 3 27 27 H 0.96998 * 120.00514 * 180.02562 * 7 6 4 28 28 H 1.08992 * 109.47471 * 183.95563 * 13 12 2 29 29 H 1.09010 * 109.47006 * 303.95553 * 13 12 2 30 30 H 1.08996 * 109.47330 * 63.95371 * 13 12 2 31 31 H 1.08996 * 109.47149 * 174.86921 * 16 14 12 32 32 H 1.09001 * 109.47127 * 294.87108 * 16 14 12 33 33 H 1.09001 * 109.47157 * 54.87062 * 16 14 12 34 34 H 1.08998 * 109.52871 * 57.68763 * 19 17 14 35 35 H 1.08995 * 109.52557 * 297.49716 * 19 17 14 36 36 H 1.08996 * 109.50720 * 62.28736 * 20 19 17 37 37 H 1.08997 * 109.50230 * 182.36564 * 20 19 17 38 38 H 1.09001 * 109.46132 * 179.21273 * 21 20 19 39 39 H 1.09000 * 109.46116 * 299.18587 * 21 20 19 40 40 H 1.00901 * 110.98369 * 62.38189 * 22 21 20 41 41 H 1.08999 * 109.46320 * 301.72544 * 23 22 21 42 42 H 1.09000 * 109.46096 * 181.75515 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6081 -1.6188 -1.1323 6 6 1.7567 -0.2006 -2.4815 7 7 1.8161 -0.9821 -3.5377 8 14 1.2989 1.5999 -2.6766 9 1 2.5337 2.4111 -2.8264 10 1 0.4478 1.7665 -3.8819 11 1 0.5514 2.0533 -1.4762 12 7 2.0197 -0.6924 1.1994 13 6 1.5780 -2.0934 1.2157 14 6 3.4823 -0.6004 1.3002 15 1 3.9367 -1.0614 0.4232 16 6 3.8968 0.8705 1.3756 17 6 3.9535 -1.3284 2.5607 18 1 3.6572 -2.3760 2.5088 19 6 5.4779 -1.2323 2.6668 20 6 5.9354 -1.9109 3.9610 21 6 5.2446 -1.2448 5.1532 22 7 3.7877 -1.3639 5.0045 23 6 3.3194 -0.6790 3.7929 24 1 -0.3634 0.4178 0.9389 25 1 -0.3634 0.6042 -0.8312 26 1 -0.3634 -1.0220 -0.1076 27 1 1.6225 -0.6235 -4.4179 28 1 1.8944 -2.5633 2.1468 29 1 0.4913 -2.1327 1.1398 30 1 2.0205 -2.6237 0.3724 31 1 4.9719 0.9369 1.5418 32 1 3.6423 1.3681 0.4398 33 1 3.3713 1.3543 2.1990 34 1 5.7769 -0.1842 2.6797 35 1 5.9347 -1.7318 1.8125 36 1 5.6708 -2.9678 3.9310 37 1 7.0158 -1.8090 4.0630 38 1 5.5578 -1.7352 6.0749 39 1 5.5207 -0.1910 5.1906 40 1 3.5023 -2.3317 5.0060 41 1 3.6044 0.3722 3.8368 42 1 2.2342 -0.7584 3.7273 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699676373.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:10 Heat of formation + Delta-G solvation = -20.097219 kcal Electronic energy + Delta-G solvation = -18904.550649 eV Core-core repulsion = 16304.291004 eV Total energy + Delta-G solvation = -2600.259644 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.69030 -38.45390 -35.06454 -33.69967 -32.32286 -30.93859 -29.95249 -27.14285 -25.92377 -24.89799 -24.44368 -22.24480 -21.11945 -19.98927 -18.60700 -17.02050 -16.83623 -16.37678 -16.16078 -15.68987 -15.52970 -14.76469 -14.71541 -14.46315 -13.93163 -13.86339 -13.49276 -13.33309 -13.14739 -12.88948 -12.75146 -12.69188 -12.47494 -12.27283 -12.10495 -11.99066 -11.75250 -11.62482 -11.46229 -11.37285 -11.12275 -10.92870 -10.56294 -9.20473 -8.82652 -8.34181 -6.28144 1.32066 1.36460 1.45196 2.34118 3.01272 3.29538 3.50070 3.83414 3.98122 4.13854 4.17678 4.36070 4.48383 4.52126 4.62444 4.64370 4.69297 4.70858 4.78280 4.83635 4.94264 4.96157 5.02451 5.07315 5.11412 5.12993 5.16157 5.18689 5.30773 5.32643 5.38124 5.49287 5.53076 5.59164 5.63545 6.19014 6.22463 6.42738 6.55825 6.58538 6.77398 7.36235 8.82757 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.037349 B = 0.006702 C = 0.006537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.513886 B = 4177.011210 C = 4282.111729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.177 3.823 3 H 0.038 0.962 4 C -0.542 4.542 5 H 0.029 0.971 6 C 0.025 3.975 7 N -0.938 5.938 8 Si 0.920 3.080 9 H -0.277 1.277 10 H -0.290 1.290 11 H -0.228 1.228 12 N -0.515 5.515 13 C 0.037 3.963 14 C 0.095 3.905 15 H 0.005 0.995 16 C -0.139 4.139 17 C -0.106 4.106 18 H 0.057 0.943 19 C -0.117 4.117 20 C -0.148 4.148 21 C 0.058 3.942 22 N -0.691 5.691 23 C 0.081 3.919 24 H 0.058 0.942 25 H 0.038 0.962 26 H 0.039 0.961 27 H 0.263 0.737 28 H 0.074 0.926 29 H 0.061 0.939 30 H -0.003 1.003 31 H 0.069 0.931 32 H 0.035 0.965 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.046 0.954 36 H 0.058 0.942 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.341 0.659 41 H 0.070 0.930 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.158 1.467 16.217 17.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.069 3.931 3 H 0.056 0.944 4 C -0.581 4.581 5 H 0.047 0.953 6 C -0.174 4.174 7 N -0.577 5.577 8 Si 0.744 3.256 9 H -0.202 1.202 10 H -0.216 1.216 11 H -0.151 1.151 12 N -0.238 5.238 13 C -0.111 4.111 14 C -0.015 4.015 15 H 0.024 0.976 16 C -0.196 4.196 17 C -0.126 4.126 18 H 0.076 0.924 19 C -0.155 4.155 20 C -0.187 4.187 21 C -0.072 4.072 22 N -0.319 5.319 23 C -0.049 4.049 24 H 0.077 0.923 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.015 0.985 31 H 0.088 0.912 32 H 0.054 0.946 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.159 0.841 41 H 0.088 0.912 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.778 2.236 16.897 17.702 hybrid contribution 0.567 -0.740 -2.797 2.948 sum 5.345 1.496 14.100 15.153 Atomic orbital electron populations 1.22036 0.97016 1.00267 0.99878 1.19565 0.92625 0.94494 0.86438 0.94420 1.21710 1.34505 1.10040 0.91798 0.95274 1.25722 0.94611 1.01520 0.95564 1.70187 1.50598 1.36984 0.99944 0.86262 0.78819 0.81556 0.78935 1.20249 1.21577 1.15068 1.62551 1.10015 1.13281 1.37955 1.22209 1.00345 0.89689 0.98880 1.21385 0.88172 0.96553 0.95356 0.97647 1.21870 1.01141 0.95182 1.01380 1.21825 0.95933 0.99106 0.95769 0.92426 1.21676 0.94458 1.01480 0.97879 1.22202 1.01540 0.99672 0.95322 1.22077 0.86714 1.01168 0.97205 1.60783 1.12806 1.19991 1.38323 1.21872 0.99703 0.97891 0.85436 0.92277 0.94260 0.94171 0.92793 0.90791 0.92056 0.98472 0.91198 0.94622 0.91003 0.91062 0.93548 0.92322 0.90337 0.89468 0.91118 0.84131 0.91163 0.90675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.68 8.30 71.98 0.60 -5.08 16 2 C 0.18 8.08 1.65 44.17 0.07 8.15 16 3 H 0.04 1.74 4.78 -2.39 -0.01 1.73 16 4 C -0.54 -30.15 7.50 25.60 0.19 -29.96 16 5 H 0.03 1.84 6.07 -2.91 -0.02 1.82 16 6 C 0.02 1.42 5.30 84.65 0.45 1.87 16 7 N -0.94 -58.28 13.96 21.45 0.30 -57.98 16 8 Si 0.92 43.28 26.04 68.60 1.79 45.07 16 9 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 10 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 11 H -0.23 -9.71 5.57 99.48 0.55 -9.15 16 12 N -0.51 -20.15 3.88 -876.20 -3.40 -23.55 16 13 C 0.04 1.43 8.45 127.69 1.08 2.51 16 14 C 0.09 3.45 1.66 44.92 0.07 3.52 16 15 H 0.01 0.25 6.89 -2.38 -0.02 0.23 16 16 C -0.14 -4.56 8.08 71.98 0.58 -3.98 16 17 C -0.11 -2.99 1.68 -10.74 -0.02 -3.01 16 18 H 0.06 1.72 6.35 -2.39 -0.02 1.71 16 19 C -0.12 -2.88 5.00 30.67 0.15 -2.73 16 20 C -0.15 -2.83 6.08 30.65 0.19 -2.64 16 21 C 0.06 1.05 6.56 86.31 0.57 1.62 16 22 N -0.69 -14.91 6.87 -513.79 -3.53 -18.44 16 23 C 0.08 2.05 5.34 86.33 0.46 2.52 16 24 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.04 1.68 5.09 -2.39 -0.01 1.67 16 26 H 0.04 1.73 6.67 -2.39 -0.02 1.71 16 27 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 28 H 0.07 2.37 6.23 -2.39 -0.01 2.35 16 29 H 0.06 2.31 6.27 -2.38 -0.01 2.29 16 30 H 0.00 -0.16 6.46 -2.39 -0.02 -0.17 16 31 H 0.07 1.98 6.12 -2.39 -0.01 1.97 16 32 H 0.03 1.33 6.57 -2.39 -0.02 1.32 16 33 H 0.07 2.14 6.69 -2.39 -0.02 2.13 16 34 H 0.07 1.70 6.21 -2.39 -0.01 1.68 16 35 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.34 6.81 8.86 -89.69 -0.79 6.01 16 41 H 0.07 1.83 6.50 -2.39 -0.02 1.81 16 42 H 0.07 2.12 7.64 -2.39 -0.02 2.11 16 Total: -1.00 -62.53 296.67 -0.39 -62.92 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 0.06 Total: 19.19 kcal Atomic # 6 Polarization: -31.61 SS G_CDS: 4.39 Total: -27.22 kcal Atomic # 7 Polarization: -93.34 SS G_CDS: -6.63 Total: -99.97 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.79 Total: 45.07 kcal Total: -62.53 -0.39 -62.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699676373.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.826 kcal (2) G-P(sol) polarization free energy of solvation -62.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds