Wall clock time and date at job start Mon Mar 30 2020 03:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47431 * 2 1 4 4 C 1.50701 * 109.47435 * 120.00594 * 2 1 3 5 5 H 1.07991 * 120.00054 * 119.99676 * 4 2 1 6 6 C 1.37882 * 119.99551 * 299.99452 * 4 2 1 7 7 N 1.31509 * 120.00142 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 119.99761 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47305 * 60.00422 * 8 6 4 10 10 H 1.48504 * 109.47110 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47355 * 300.00398 * 8 6 4 12 12 N 1.46905 * 109.47077 * 240.00371 * 2 1 3 13 13 C 1.46899 * 111.00106 * 84.99783 * 12 2 1 14 14 C 1.52998 * 109.47370 * 180.02562 * 13 12 2 15 15 H 1.08998 * 108.75710 * 53.34181 * 14 13 12 16 16 C 1.50532 * 108.70266 * 171.64785 * 14 13 12 17 17 C 1.54521 * 108.87108 * 212.57844 * 16 14 13 18 18 C 1.45876 * 111.66644 * 282.77333 * 17 16 14 19 19 C 1.53980 * 112.66762 * 61.49504 * 18 17 16 20 20 N 1.44305 * 108.30828 * 278.58555 * 19 18 17 21 21 C 1.46908 * 110.99760 * 221.35419 * 20 19 18 22 22 C 1.47939 * 113.64482 * 95.40426 * 20 19 18 23 23 H 1.09003 * 109.46825 * 299.99869 * 1 2 3 24 24 H 1.08996 * 109.47426 * 59.99272 * 1 2 3 25 25 H 1.08998 * 109.47431 * 180.02562 * 1 2 3 26 26 H 0.97003 * 120.00377 * 179.97438 * 7 6 4 27 27 H 1.00896 * 111.00085 * 208.95495 * 12 2 1 28 28 H 1.09007 * 109.47049 * 60.00288 * 13 12 2 29 29 H 1.09000 * 109.47526 * 300.00275 * 13 12 2 30 30 H 1.09004 * 109.57337 * 92.76239 * 16 14 13 31 31 H 1.09005 * 109.56686 * 332.39785 * 16 14 13 32 32 H 1.08998 * 109.03940 * 162.20335 * 17 16 14 33 33 H 1.09002 * 109.03789 * 43.33444 * 17 16 14 34 34 H 1.08997 * 108.84200 * 182.31577 * 18 17 16 35 35 H 1.08996 * 108.83893 * 300.67133 * 18 17 16 36 36 H 1.08988 * 109.69991 * 38.29310 * 19 18 17 37 37 H 1.09002 * 109.69262 * 158.88723 * 19 18 17 38 38 H 1.08999 * 109.47006 * 63.96153 * 21 20 19 39 39 H 1.09007 * 109.46521 * 183.95510 * 21 20 19 40 40 H 1.08994 * 109.46819 * 303.95472 * 21 20 19 41 41 H 1.09002 * 108.71433 * 79.13371 * 22 20 19 42 42 H 1.08996 * 108.71202 * 197.27092 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8295 2.6034 8 14 2.3215 -1.1205 4.0078 9 1 3.8064 -1.1211 4.0080 10 1 1.8261 -0.4208 5.2204 11 1 1.8259 -2.5204 4.0075 12 7 2.0196 -0.6924 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5949 -0.5330 -3.5746 15 1 1.9796 -1.4205 -3.7219 16 6 2.4589 0.3572 -4.7809 17 6 2.1638 -0.5198 -6.0184 18 6 3.3672 -1.1836 -6.5074 19 6 3.9843 -2.1358 -5.4665 20 7 4.7732 -1.3521 -4.5468 21 6 6.0360 -2.0308 -4.2258 22 6 4.0466 -0.9737 -3.3150 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 0.7083 1.1608 3.4845 27 1 2.9172 -1.1205 -1.0289 28 1 2.7588 1.0463 -2.1182 29 1 1.0870 0.6165 -2.5526 30 1 3.3874 0.9067 -4.9358 31 1 1.6389 1.0586 -4.6264 32 1 1.7572 0.1086 -6.8108 33 1 1.4248 -1.2751 -5.7509 34 1 3.1158 -1.7544 -7.4013 35 1 4.1044 -0.4256 -6.7720 36 1 3.1915 -2.6507 -4.9241 37 1 4.6209 -2.8650 -5.9676 38 1 6.6415 -2.1175 -5.1280 39 1 6.5790 -1.4530 -3.4778 40 1 5.8242 -3.0254 -3.8333 41 1 4.0369 -1.8282 -2.6382 42 1 4.5785 -0.1533 -2.8333 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700809435.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:04 Heat of formation + Delta-G solvation = -11.029410 kcal Electronic energy + Delta-G solvation = -18097.360224 eV Core-core repulsion = 15497.493789 eV Total energy + Delta-G solvation = -2599.866435 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.29398 -36.10314 -34.56928 -33.34661 -31.49890 -28.41755 -27.44248 -25.77783 -25.09881 -24.32018 -22.12275 -20.44854 -19.62849 -19.09363 -16.62657 -15.94596 -15.61900 -14.99884 -14.76870 -14.24699 -13.75259 -13.60388 -13.40804 -13.15750 -12.79181 -12.58506 -12.27716 -12.04950 -11.56971 -11.38401 -11.29011 -10.92906 -10.79779 -10.63447 -10.58813 -10.47809 -10.41032 -10.22576 -10.12739 -10.02514 -9.66677 -8.80147 -8.45865 -8.11704 -7.22714 -6.01256 -4.07816 3.31191 3.35681 3.38347 3.98180 4.40717 4.80163 4.91992 4.97530 5.11924 5.25488 5.30068 5.37898 5.44596 5.51240 5.59795 5.68994 5.75481 5.84907 5.90561 5.93197 6.04547 6.11090 6.18548 6.23174 6.35982 6.38943 6.45243 6.60431 6.74062 6.92051 7.15549 7.16862 7.26600 7.32166 7.54216 7.79071 7.92456 8.29711 8.42084 8.70438 9.02989 9.58006 11.05008 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.033047 B = 0.005274 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.072397 B = 5307.718335 C = 5939.543317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.211 3.789 3 H 0.000 1.000 4 C -0.519 4.519 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.896 3.104 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.691 5.691 13 C 0.066 3.934 14 C -0.084 4.084 15 H 0.072 0.928 16 C -0.105 4.105 17 C -0.116 4.116 18 C -0.110 4.110 19 C 0.061 3.939 20 N -0.554 5.554 21 C 0.030 3.970 22 C 0.067 3.933 23 H 0.080 0.920 24 H 0.004 0.996 25 H 0.030 0.970 26 H 0.261 0.739 27 H 0.327 0.673 28 H 0.019 0.981 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.045 0.955 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.023 0.977 41 H 0.038 0.962 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.713 -3.220 -15.533 16.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.103 3.897 3 H 0.018 0.982 4 C -0.557 4.557 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.724 3.276 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.322 5.322 13 C -0.064 4.064 14 C -0.104 4.104 15 H 0.090 0.910 16 C -0.143 4.143 17 C -0.153 4.153 18 C -0.149 4.149 19 C -0.067 4.067 20 N -0.278 5.278 21 C -0.118 4.118 22 C -0.060 4.060 23 H 0.098 0.902 24 H 0.023 0.977 25 H 0.049 0.951 26 H 0.071 0.929 27 H 0.145 0.855 28 H 0.037 0.963 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.042 0.958 41 H 0.057 0.943 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.100 -2.933 -15.768 16.830 hybrid contribution 0.861 -0.647 1.595 1.924 sum 5.962 -3.580 -14.174 15.788 Atomic orbital electron populations 1.21701 0.97948 0.99245 0.99284 1.19091 0.92593 0.92300 0.85688 0.98244 1.21225 1.31486 1.12447 0.90552 0.92429 1.24917 0.95059 0.94993 0.99006 1.69887 1.36566 1.22892 1.23527 0.86593 0.79048 0.79791 0.82143 1.20361 1.21276 1.20228 1.60791 1.31859 1.33307 1.06229 1.22065 0.99491 0.93899 0.90966 1.21018 0.94779 0.99261 0.95306 0.90983 1.21348 1.01767 0.97617 0.93615 1.20555 0.97805 0.99015 0.97939 1.20463 0.97953 0.99110 0.97342 1.21802 0.96431 0.94348 0.94165 1.60753 1.05907 1.45428 1.15708 1.22360 0.91741 0.96650 1.01090 1.22478 0.93956 0.99898 0.89658 0.90186 0.97741 0.95061 0.92887 0.85527 0.96294 0.91651 0.91279 0.92119 0.92616 0.92537 0.92825 0.91433 0.93635 0.92029 0.91753 0.91603 0.95802 0.94344 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.14 9.19 37.15 0.34 -2.80 16 2 C 0.21 5.45 2.60 -68.86 -0.18 5.27 16 3 H 0.00 0.00 7.80 -51.93 -0.40 -0.41 16 4 C -0.52 -14.41 8.59 -34.44 -0.30 -14.71 16 5 H 0.06 1.58 7.62 -52.49 -0.40 1.18 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.70 11.32 55.43 0.63 -25.08 16 8 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.69 -14.95 6.30 -107.95 -0.68 -15.63 16 13 C 0.07 1.21 4.73 -3.83 -0.02 1.19 16 14 C -0.08 -1.26 1.86 -91.37 -0.17 -1.43 16 15 H 0.07 1.14 6.66 -51.93 -0.35 0.80 16 16 C -0.11 -1.37 5.13 -27.17 -0.14 -1.51 16 17 C -0.12 -1.30 5.35 -29.30 -0.16 -1.46 16 18 C -0.11 -1.17 5.37 -29.59 -0.16 -1.33 16 19 C 0.06 0.70 5.41 -4.70 -0.03 0.67 16 20 N -0.55 -6.97 4.25 -242.92 -1.03 -8.00 16 21 C 0.03 0.32 9.27 60.07 0.56 0.88 16 22 C 0.07 0.96 4.14 -2.77 -0.01 0.95 16 23 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 24 H 0.00 0.08 7.45 -51.93 -0.39 -0.30 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.33 6.94 6.80 -39.29 -0.27 6.67 16 28 H 0.02 0.36 7.91 -51.92 -0.41 -0.05 16 29 H 0.07 1.23 7.14 -51.93 -0.37 0.86 16 30 H 0.07 0.92 7.79 -51.93 -0.40 0.52 16 31 H 0.06 0.79 7.55 -51.93 -0.39 0.40 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.66 7.59 -51.93 -0.39 0.26 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 36 H 0.05 0.57 6.79 -51.94 -0.35 0.22 16 37 H 0.06 0.62 7.61 -51.93 -0.40 0.23 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.71 8.06 -51.93 -0.42 0.29 16 40 H 0.02 0.26 8.13 -51.93 -0.42 -0.17 16 41 H 0.04 0.59 7.26 -51.93 -0.38 0.21 16 42 H 0.07 1.05 7.87 -51.93 -0.41 0.64 16 LS Contribution 314.73 15.07 4.74 4.74 Total: -1.00 -28.31 314.73 -9.43 -37.74 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -7.71 Total: 2.45 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: -0.35 Total: -12.62 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: -1.09 Total: -48.71 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.31 -9.43 -37.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700809435.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.708 kcal (2) G-P(sol) polarization free energy of solvation -28.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds