Wall clock time and date at job start Mon Mar 30 2020 03:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47431 * 2 1 4 4 C 1.50701 * 109.47435 * 120.00594 * 2 1 3 5 5 H 1.07991 * 120.00054 * 119.99676 * 4 2 1 6 6 C 1.37882 * 119.99551 * 299.99452 * 4 2 1 7 7 N 1.31509 * 120.00142 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 119.99761 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47305 * 60.00422 * 8 6 4 10 10 H 1.48504 * 109.47110 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47355 * 300.00398 * 8 6 4 12 12 N 1.46905 * 109.47077 * 240.00371 * 2 1 3 13 13 C 1.46899 * 111.00106 * 84.99783 * 12 2 1 14 14 C 1.52998 * 109.47370 * 180.02562 * 13 12 2 15 15 H 1.08998 * 108.75710 * 53.34181 * 14 13 12 16 16 C 1.50532 * 108.70266 * 171.64785 * 14 13 12 17 17 C 1.54521 * 108.87108 * 212.57844 * 16 14 13 18 18 C 1.45876 * 111.66644 * 282.77333 * 17 16 14 19 19 C 1.53980 * 112.66762 * 61.49504 * 18 17 16 20 20 N 1.44305 * 108.30828 * 278.58555 * 19 18 17 21 21 C 1.46908 * 110.99760 * 221.35419 * 20 19 18 22 22 C 1.47939 * 113.64482 * 95.40426 * 20 19 18 23 23 H 1.09003 * 109.46825 * 299.99869 * 1 2 3 24 24 H 1.08996 * 109.47426 * 59.99272 * 1 2 3 25 25 H 1.08998 * 109.47431 * 180.02562 * 1 2 3 26 26 H 0.97003 * 120.00377 * 179.97438 * 7 6 4 27 27 H 1.00896 * 111.00085 * 208.95495 * 12 2 1 28 28 H 1.09007 * 109.47049 * 60.00288 * 13 12 2 29 29 H 1.09000 * 109.47526 * 300.00275 * 13 12 2 30 30 H 1.09004 * 109.57337 * 92.76239 * 16 14 13 31 31 H 1.09005 * 109.56686 * 332.39785 * 16 14 13 32 32 H 1.08998 * 109.03940 * 162.20335 * 17 16 14 33 33 H 1.09002 * 109.03789 * 43.33444 * 17 16 14 34 34 H 1.08997 * 108.84200 * 182.31577 * 18 17 16 35 35 H 1.08996 * 108.83893 * 300.67133 * 18 17 16 36 36 H 1.08988 * 109.69991 * 38.29310 * 19 18 17 37 37 H 1.09002 * 109.69262 * 158.88723 * 19 18 17 38 38 H 1.08999 * 109.47006 * 63.96153 * 21 20 19 39 39 H 1.09007 * 109.46521 * 183.95510 * 21 20 19 40 40 H 1.08994 * 109.46819 * 303.95472 * 21 20 19 41 41 H 1.09002 * 108.71433 * 79.13371 * 22 20 19 42 42 H 1.08996 * 108.71202 * 197.27092 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8295 2.6034 8 14 2.3215 -1.1205 4.0078 9 1 3.8064 -1.1211 4.0080 10 1 1.8261 -0.4208 5.2204 11 1 1.8259 -2.5204 4.0075 12 7 2.0196 -0.6924 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5949 -0.5330 -3.5746 15 1 1.9796 -1.4205 -3.7219 16 6 2.4589 0.3572 -4.7809 17 6 2.1638 -0.5198 -6.0184 18 6 3.3672 -1.1836 -6.5074 19 6 3.9843 -2.1358 -5.4665 20 7 4.7732 -1.3521 -4.5468 21 6 6.0360 -2.0308 -4.2258 22 6 4.0466 -0.9737 -3.3150 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 0.7083 1.1608 3.4845 27 1 2.9172 -1.1205 -1.0289 28 1 2.7588 1.0463 -2.1182 29 1 1.0870 0.6165 -2.5526 30 1 3.3874 0.9067 -4.9358 31 1 1.6389 1.0586 -4.6264 32 1 1.7572 0.1086 -6.8108 33 1 1.4248 -1.2751 -5.7509 34 1 3.1158 -1.7544 -7.4013 35 1 4.1044 -0.4256 -6.7720 36 1 3.1915 -2.6507 -4.9241 37 1 4.6209 -2.8650 -5.9676 38 1 6.6415 -2.1175 -5.1280 39 1 6.5790 -1.4530 -3.4778 40 1 5.8242 -3.0254 -3.8333 41 1 4.0369 -1.8282 -2.6382 42 1 4.5785 -0.1533 -2.8333 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700809435.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:03 Heat of formation + Delta-G solvation = -28.932813 kcal Electronic energy + Delta-G solvation = -18098.136573 eV Core-core repulsion = 15497.493789 eV Total energy + Delta-G solvation = -2600.642785 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.38304 -37.78749 -35.72114 -34.91072 -33.19635 -30.10119 -28.50982 -27.49140 -26.69859 -25.53684 -23.40870 -21.83577 -21.18975 -20.26770 -18.57919 -17.23858 -16.75045 -16.60934 -16.18240 -15.59853 -15.42401 -14.90625 -14.65926 -14.42929 -13.98625 -13.83193 -13.59098 -13.56727 -13.09103 -12.86404 -12.74962 -12.63924 -12.42490 -12.24974 -12.21196 -11.99217 -11.75862 -11.50085 -11.41417 -11.25161 -11.15112 -10.84794 -10.58027 -9.14109 -9.05626 -8.14461 -6.29266 1.41184 1.43296 1.50990 2.40348 2.98091 3.13760 3.55361 3.77974 3.96834 4.07332 4.17284 4.26379 4.36515 4.46246 4.55120 4.62621 4.74148 4.75972 4.81614 4.85498 4.86021 4.96080 4.99262 5.02632 5.06297 5.17573 5.22206 5.29930 5.35578 5.40765 5.45957 5.53255 5.61942 5.66082 5.84759 6.14210 6.20836 6.35902 6.45626 6.76072 6.97913 7.41214 8.91107 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.033047 B = 0.005274 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.072397 B = 5307.718335 C = 5939.543317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.214 3.786 3 H -0.033 1.033 4 C -0.540 4.540 5 H 0.057 0.943 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.964 3.036 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.271 1.271 12 N -0.687 5.687 13 C 0.069 3.931 14 C -0.070 4.070 15 H 0.065 0.935 16 C -0.103 4.103 17 C -0.112 4.112 18 C -0.107 4.107 19 C 0.058 3.942 20 N -0.556 5.556 21 C 0.028 3.972 22 C 0.074 3.926 23 H 0.057 0.943 24 H 0.021 0.979 25 H 0.027 0.973 26 H 0.263 0.737 27 H 0.330 0.670 28 H 0.011 0.989 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.033 0.967 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.062 0.938 40 H 0.024 0.976 41 H 0.025 0.975 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.429 -4.174 -16.681 18.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 H -0.015 1.015 4 C -0.578 4.578 5 H 0.076 0.924 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.789 3.211 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.197 1.197 12 N -0.318 5.318 13 C -0.061 4.061 14 C -0.089 4.089 15 H 0.084 0.916 16 C -0.141 4.141 17 C -0.149 4.149 18 C -0.145 4.145 19 C -0.071 4.071 20 N -0.281 5.281 21 C -0.120 4.120 22 C -0.054 4.054 23 H 0.076 0.924 24 H 0.040 0.960 25 H 0.046 0.954 26 H 0.072 0.928 27 H 0.147 0.853 28 H 0.029 0.971 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.051 0.949 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.042 0.958 41 H 0.043 0.957 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.825 -3.895 -16.942 18.334 hybrid contribution 0.644 -0.328 1.907 2.040 sum 6.469 -4.223 -15.035 16.903 Atomic orbital electron populations 1.21528 0.97726 0.98787 0.98999 1.18918 0.92775 0.90696 0.87055 1.01533 1.21543 1.31881 1.12712 0.91688 0.92446 1.25746 0.95113 0.95658 1.02066 1.70017 1.37318 1.24049 1.24281 0.85531 0.78725 0.78640 0.78237 1.19557 1.20783 1.19653 1.60724 1.32018 1.33485 1.05568 1.22120 0.99260 0.93615 0.91107 1.20883 0.94855 0.98823 0.94355 0.91611 1.21321 1.01656 0.97529 0.93579 1.20533 0.98210 0.98841 0.97326 1.20439 0.97376 0.99019 0.97691 1.21908 0.96343 0.94764 0.94051 1.60794 1.06308 1.46268 1.14709 1.22433 0.91119 0.96356 1.02050 1.22311 0.93636 0.98935 0.90480 0.92448 0.96002 0.95393 0.92775 0.85288 0.97103 0.92142 0.91482 0.92214 0.91012 0.92876 0.90771 0.91631 0.94877 0.90264 0.89774 0.91905 0.95788 0.95719 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.78 9.19 71.98 0.66 -5.11 16 2 C 0.21 11.29 2.60 44.17 0.11 11.40 16 3 H -0.03 -1.92 7.80 -2.39 -0.02 -1.94 16 4 C -0.54 -30.33 8.59 25.60 0.22 -30.11 16 5 H 0.06 3.15 7.62 -2.92 -0.02 3.13 16 6 C 0.01 0.76 5.30 84.66 0.45 1.21 16 7 N -0.92 -53.64 11.32 21.45 0.24 -53.39 16 8 Si 0.96 43.87 29.54 68.60 2.03 45.89 16 9 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 12 N -0.69 -30.13 6.30 -495.44 -3.12 -33.25 16 13 C 0.07 2.55 4.73 86.30 0.41 2.96 16 14 C -0.07 -2.05 1.86 -11.28 -0.02 -2.08 16 15 H 0.07 2.04 6.66 -2.39 -0.02 2.02 16 16 C -0.10 -2.55 5.13 30.31 0.16 -2.39 16 17 C -0.11 -2.26 5.35 28.93 0.15 -2.11 16 18 C -0.11 -1.98 5.37 28.74 0.15 -1.82 16 19 C 0.06 1.20 5.41 87.12 0.47 1.67 16 20 N -0.56 -13.20 4.25 -922.47 -3.92 -17.12 16 21 C 0.03 0.57 9.27 127.69 1.18 1.75 16 22 C 0.07 2.10 4.14 86.41 0.36 2.46 16 23 H 0.06 3.22 6.07 -2.39 -0.01 3.20 16 24 H 0.02 1.00 7.45 -2.39 -0.02 0.98 16 25 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 27 H 0.33 14.18 6.80 -89.70 -0.61 13.57 16 28 H 0.01 0.42 7.91 -2.38 -0.02 0.40 16 29 H 0.06 2.28 7.14 -2.39 -0.02 2.26 16 30 H 0.07 1.70 7.79 -2.38 -0.02 1.68 16 31 H 0.06 1.49 7.55 -2.38 -0.02 1.47 16 32 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.05 1.13 7.59 -2.39 -0.02 1.11 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.06 1.27 8.08 -2.39 -0.02 1.25 16 36 H 0.03 0.78 6.79 -2.39 -0.02 0.76 16 37 H 0.08 1.37 7.61 -2.39 -0.02 1.35 16 38 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.06 1.29 8.06 -2.38 -0.02 1.27 16 40 H 0.02 0.48 8.13 -2.39 -0.02 0.46 16 41 H 0.02 0.76 7.26 -2.39 -0.02 0.74 16 42 H 0.06 1.75 7.87 -2.39 -0.02 1.73 16 Total: -1.00 -60.03 314.73 -0.11 -60.14 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.35 Total: 19.91 kcal Atomic # 6 Polarization: -26.48 SS G_CDS: 4.31 Total: -22.17 kcal Atomic # 7 Polarization: -96.96 SS G_CDS: -6.80 Total: -103.77 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -60.03 -0.11 -60.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700809435.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.204 kcal (2) G-P(sol) polarization free energy of solvation -60.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds