Wall clock time and date at job start Mon Mar 30 2020 03:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47183 * 2 1 4 4 C 1.50702 * 109.47175 * 120.00514 * 2 1 3 5 5 H 1.08000 * 119.99881 * 119.99837 * 4 2 1 6 6 C 1.37874 * 119.99700 * 299.99959 * 4 2 1 7 7 N 1.31514 * 120.00387 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99764 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47576 * 60.00043 * 8 6 4 10 10 H 1.48508 * 109.47262 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47156 * 299.99589 * 8 6 4 12 12 N 1.46903 * 109.46829 * 240.00283 * 2 1 3 13 13 C 1.46897 * 110.99923 * 85.00257 * 12 2 1 14 14 C 1.53001 * 109.47100 * 179.97438 * 13 12 2 15 15 H 1.09006 * 108.98340 * 306.03998 * 14 13 12 16 16 C 1.54510 * 109.05991 * 187.08460 * 14 13 12 17 17 C 1.50456 * 108.85826 * 162.26373 * 16 14 13 18 18 C 1.54294 * 113.03440 * 92.15404 * 17 16 14 19 19 C 1.54070 * 112.28877 * 318.30321 * 18 17 16 20 20 N 1.44274 * 111.97951 * 318.91691 * 19 18 17 21 21 C 1.46902 * 110.99471 * 219.30765 * 20 19 18 22 22 C 1.45866 * 109.05843 * 64.99784 * 14 13 12 23 23 H 1.09000 * 109.46817 * 59.99914 * 1 2 3 24 24 H 1.09007 * 109.46917 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47176 * 299.99421 * 1 2 3 26 26 H 0.96997 * 120.00114 * 180.02562 * 7 6 4 27 27 H 1.00896 * 111.00392 * 321.04229 * 12 2 1 28 28 H 1.08997 * 109.47140 * 59.99815 * 13 12 2 29 29 H 1.08995 * 109.47258 * 299.99572 * 13 12 2 30 30 H 1.09000 * 109.57270 * 282.08000 * 16 14 13 31 31 H 1.09003 * 109.57140 * 42.44813 * 16 14 13 32 32 H 1.09004 * 108.76720 * 331.24108 * 17 16 14 33 33 H 1.08993 * 108.77221 * 213.07486 * 17 16 14 34 34 H 1.09002 * 108.91768 * 197.58035 * 18 17 16 35 35 H 1.08993 * 108.84350 * 78.97718 * 18 17 16 36 36 H 1.08991 * 108.97876 * 198.26901 * 19 18 17 37 37 H 1.09002 * 108.97366 * 79.55594 * 19 18 17 38 38 H 1.08997 * 109.46973 * 298.01364 * 21 20 19 39 39 H 1.08995 * 109.47378 * 58.02090 * 21 20 19 40 40 H 1.09009 * 109.46494 * 178.01673 * 21 20 19 41 41 H 1.08999 * 108.79078 * 302.75687 * 22 14 13 42 42 H 1.09000 * 108.79293 * 61.09320 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8300 2.6035 8 14 2.3225 -1.1198 4.0078 9 1 3.8075 -1.1193 4.0077 10 1 1.8279 -0.4196 5.2204 11 1 1.8280 -2.5200 4.0080 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5961 -0.5327 -3.5742 15 1 3.5424 -1.0129 -3.3247 16 6 2.8284 0.4723 -4.7246 17 6 3.7209 -0.1651 -5.7545 18 6 2.9361 -0.8845 -6.8713 19 6 1.7354 -1.6791 -6.3231 20 7 2.0591 -2.3706 -5.0990 21 6 1.4394 -3.7022 -5.0671 22 6 1.6254 -1.5567 -3.9440 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 0.7096 1.1616 3.4845 27 1 1.4496 -1.4979 -1.4101 28 1 2.7588 1.0462 -2.1182 29 1 1.0871 0.6164 -2.5525 30 1 1.8731 0.7329 -5.1802 31 1 3.3057 1.3709 -4.3336 32 1 4.3677 -0.8888 -5.2584 33 1 4.3438 0.6074 -6.2052 34 1 3.6068 -1.5701 -7.3893 35 1 2.5736 -0.1414 -7.5815 36 1 1.4221 -2.4083 -7.0701 37 1 0.9115 -0.9909 -6.1342 38 1 0.3548 -3.5990 -5.0997 39 1 1.7755 -4.2801 -5.9279 40 1 1.7282 -4.2153 -4.1497 41 1 1.4672 -2.2153 -3.0900 42 1 0.6813 -1.0721 -4.1927 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700809436.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:05 Heat of formation + Delta-G solvation = -5.987890 kcal Electronic energy + Delta-G solvation = -18100.830154 eV Core-core repulsion = 15501.182336 eV Total energy + Delta-G solvation = -2599.647818 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.46235 -36.22094 -34.39891 -33.25836 -31.56081 -28.47815 -27.58444 -25.40530 -25.06731 -24.56425 -22.22505 -20.23222 -19.84922 -19.44889 -16.40311 -15.90535 -15.65445 -14.78538 -14.68269 -14.41437 -14.14125 -13.56330 -13.30532 -12.96474 -12.80189 -12.48627 -12.45303 -11.93760 -11.63274 -11.45004 -11.31984 -10.95184 -10.81620 -10.76330 -10.60050 -10.54790 -10.30950 -10.19115 -10.12415 -9.98039 -9.67256 -8.94105 -8.32173 -8.28915 -7.16401 -5.94478 -3.97615 3.37257 3.40810 3.44583 3.94857 4.47328 4.83915 4.85239 5.02661 5.18150 5.20834 5.33101 5.36709 5.37313 5.43469 5.58537 5.62718 5.68850 5.80690 5.85509 5.89325 6.02671 6.08070 6.14516 6.26173 6.34877 6.37412 6.50539 6.63135 6.72122 6.75579 6.86875 7.13206 7.13982 7.21595 7.42707 7.76729 7.93005 8.32530 8.59046 8.67656 9.09558 9.67639 11.12578 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.037762 B = 0.004907 C = 0.004726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.301369 B = 5705.229103 C = 5923.412164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.211 3.789 3 H 0.033 0.967 4 C -0.494 4.494 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.684 5.684 13 C 0.065 3.935 14 C -0.082 4.082 15 H 0.085 0.915 16 C -0.110 4.110 17 C -0.108 4.108 18 C -0.107 4.107 19 C 0.054 3.946 20 N -0.533 5.533 21 C 0.026 3.974 22 C 0.062 3.938 23 H 0.004 0.996 24 H 0.026 0.974 25 H 0.088 0.912 26 H 0.259 0.741 27 H 0.321 0.679 28 H 0.066 0.934 29 H 0.014 0.986 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.049 0.951 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.038 0.962 38 H 0.022 0.978 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.799 -3.654 -17.124 17.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.103 3.897 3 H 0.051 0.949 4 C -0.533 4.533 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.204 1.204 12 N -0.314 5.314 13 C -0.065 4.065 14 C -0.101 4.101 15 H 0.103 0.897 16 C -0.148 4.148 17 C -0.146 4.146 18 C -0.146 4.146 19 C -0.076 4.076 20 N -0.257 5.257 21 C -0.122 4.122 22 C -0.065 4.065 23 H 0.023 0.977 24 H 0.045 0.955 25 H 0.107 0.893 26 H 0.069 0.931 27 H 0.139 0.861 28 H 0.085 0.915 29 H 0.032 0.968 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.041 0.959 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 1.902 -3.531 -16.783 17.256 hybrid contribution -1.679 -0.188 0.614 1.798 sum 0.223 -3.719 -16.169 16.592 Atomic orbital electron populations 1.22427 1.00884 0.99027 1.00404 1.19163 0.89461 0.94441 0.86655 0.94934 1.21141 1.30097 1.12390 0.89656 0.92020 1.24952 0.95375 0.95223 0.99022 1.69875 1.37426 1.23224 1.23365 0.86571 0.79205 0.79572 0.82066 1.20287 1.21505 1.20414 1.60867 1.57940 1.09038 1.03586 1.21978 0.98211 0.95857 0.90496 1.20221 1.00583 0.95142 0.94175 0.89696 1.21364 0.99585 0.98089 0.95747 1.21175 0.98238 0.99041 0.96159 1.21920 0.97027 0.98151 0.97469 1.21930 0.96754 0.96815 0.92052 1.61555 1.58921 1.02812 1.02386 1.22457 0.96493 0.90484 1.02744 1.21112 0.96399 0.95733 0.93218 0.97742 0.95503 0.89299 0.93078 0.86115 0.91520 0.96765 0.92721 0.91880 0.91360 0.93217 0.92319 0.92645 0.92398 0.94338 0.95944 0.91717 0.91053 0.90803 0.95179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.11 8.94 37.16 0.33 -3.78 16 2 C 0.21 5.38 2.57 -68.86 -0.18 5.20 16 3 H 0.03 0.92 7.80 -51.93 -0.40 0.51 16 4 C -0.49 -13.88 8.84 -34.44 -0.30 -14.18 16 5 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 6 C 0.05 1.53 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -26.03 11.32 55.43 0.63 -25.40 16 8 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 N -0.68 -14.68 6.22 -107.95 -0.67 -15.35 16 13 C 0.07 1.18 4.87 -3.82 -0.02 1.16 16 14 C -0.08 -1.22 2.15 -93.20 -0.20 -1.43 16 15 H 0.08 1.40 7.59 -51.93 -0.39 1.01 16 16 C -0.11 -1.41 4.95 -27.21 -0.13 -1.54 16 17 C -0.11 -1.25 5.42 -27.32 -0.15 -1.40 16 18 C -0.11 -1.11 6.15 -25.50 -0.16 -1.26 16 19 C 0.05 0.59 5.18 -4.67 -0.02 0.57 16 20 N -0.53 -6.69 4.48 -247.87 -1.11 -7.80 16 21 C 0.03 0.29 9.19 60.07 0.55 0.84 16 22 C 0.06 0.88 4.06 -6.70 -0.03 0.85 16 23 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 24 H 0.03 0.62 8.13 -51.93 -0.42 0.20 16 25 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 26 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.32 6.55 6.57 -39.29 -0.26 6.30 16 28 H 0.07 1.26 7.92 -51.93 -0.41 0.85 16 29 H 0.01 0.26 7.43 -51.93 -0.39 -0.12 16 30 H 0.05 0.69 7.15 -51.93 -0.37 0.31 16 31 H 0.06 0.80 7.93 -51.93 -0.41 0.39 16 32 H 0.07 0.87 7.38 -51.93 -0.38 0.49 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.56 7.49 -51.93 -0.39 0.17 16 37 H 0.04 0.44 6.51 -51.93 -0.34 0.11 16 38 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.06 0.61 8.01 -51.93 -0.42 0.19 16 40 H 0.07 0.79 8.05 -51.92 -0.42 0.37 16 41 H 0.07 1.12 5.94 -51.93 -0.31 0.81 16 42 H 0.03 0.43 7.23 -51.93 -0.38 0.06 16 LS Contribution 313.82 15.07 4.73 4.73 Total: -1.00 -28.47 313.82 -9.47 -37.94 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -7.63 Total: 2.68 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -0.40 Total: -13.52 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: -1.16 Total: -48.56 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.47 -9.47 -37.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700809436.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.957 kcal (2) G-P(sol) polarization free energy of solvation -28.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds