Wall clock time and date at job start Mon Mar 30 2020 03:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47183 * 2 1 4 4 C 1.50702 * 109.47175 * 120.00514 * 2 1 3 5 5 H 1.08000 * 119.99881 * 119.99837 * 4 2 1 6 6 C 1.37874 * 119.99700 * 299.99959 * 4 2 1 7 7 N 1.31514 * 120.00387 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99764 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47576 * 60.00043 * 8 6 4 10 10 H 1.48508 * 109.47262 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47156 * 299.99589 * 8 6 4 12 12 N 1.46903 * 109.46829 * 240.00283 * 2 1 3 13 13 C 1.46897 * 110.99923 * 85.00257 * 12 2 1 14 14 C 1.53001 * 109.47100 * 179.97438 * 13 12 2 15 15 H 1.09006 * 108.98340 * 306.03998 * 14 13 12 16 16 C 1.54510 * 109.05991 * 187.08460 * 14 13 12 17 17 C 1.50456 * 108.85826 * 162.26373 * 16 14 13 18 18 C 1.54294 * 113.03440 * 92.15404 * 17 16 14 19 19 C 1.54070 * 112.28877 * 318.30321 * 18 17 16 20 20 N 1.44274 * 111.97951 * 318.91691 * 19 18 17 21 21 C 1.46902 * 110.99471 * 219.30765 * 20 19 18 22 22 C 1.45866 * 109.05843 * 64.99784 * 14 13 12 23 23 H 1.09000 * 109.46817 * 59.99914 * 1 2 3 24 24 H 1.09007 * 109.46917 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47176 * 299.99421 * 1 2 3 26 26 H 0.96997 * 120.00114 * 180.02562 * 7 6 4 27 27 H 1.00896 * 111.00392 * 321.04229 * 12 2 1 28 28 H 1.08997 * 109.47140 * 59.99815 * 13 12 2 29 29 H 1.08995 * 109.47258 * 299.99572 * 13 12 2 30 30 H 1.09000 * 109.57270 * 282.08000 * 16 14 13 31 31 H 1.09003 * 109.57140 * 42.44813 * 16 14 13 32 32 H 1.09004 * 108.76720 * 331.24108 * 17 16 14 33 33 H 1.08993 * 108.77221 * 213.07486 * 17 16 14 34 34 H 1.09002 * 108.91768 * 197.58035 * 18 17 16 35 35 H 1.08993 * 108.84350 * 78.97718 * 18 17 16 36 36 H 1.08991 * 108.97876 * 198.26901 * 19 18 17 37 37 H 1.09002 * 108.97366 * 79.55594 * 19 18 17 38 38 H 1.08997 * 109.46973 * 298.01364 * 21 20 19 39 39 H 1.08995 * 109.47378 * 58.02090 * 21 20 19 40 40 H 1.09009 * 109.46494 * 178.01673 * 21 20 19 41 41 H 1.08999 * 108.79078 * 302.75687 * 22 14 13 42 42 H 1.09000 * 108.79293 * 61.09320 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8300 2.6035 8 14 2.3225 -1.1198 4.0078 9 1 3.8075 -1.1193 4.0077 10 1 1.8279 -0.4196 5.2204 11 1 1.8280 -2.5200 4.0080 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5961 -0.5327 -3.5742 15 1 3.5424 -1.0129 -3.3247 16 6 2.8284 0.4723 -4.7246 17 6 3.7209 -0.1651 -5.7545 18 6 2.9361 -0.8845 -6.8713 19 6 1.7354 -1.6791 -6.3231 20 7 2.0591 -2.3706 -5.0990 21 6 1.4394 -3.7022 -5.0671 22 6 1.6254 -1.5567 -3.9440 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 0.7096 1.1616 3.4845 27 1 1.4496 -1.4979 -1.4101 28 1 2.7588 1.0462 -2.1182 29 1 1.0871 0.6164 -2.5525 30 1 1.8731 0.7329 -5.1802 31 1 3.3057 1.3709 -4.3336 32 1 4.3677 -0.8888 -5.2584 33 1 4.3438 0.6074 -6.2052 34 1 3.6068 -1.5701 -7.3893 35 1 2.5736 -0.1414 -7.5815 36 1 1.4221 -2.4083 -7.0701 37 1 0.9115 -0.9909 -6.1342 38 1 0.3548 -3.5990 -5.0997 39 1 1.7755 -4.2801 -5.9279 40 1 1.7282 -4.2153 -4.1497 41 1 1.4672 -2.2153 -3.0900 42 1 0.6813 -1.0721 -4.1927 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700809436.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:05 Heat of formation + Delta-G solvation = -24.252267 kcal Electronic energy + Delta-G solvation = -18101.622157 eV Core-core repulsion = 15501.182336 eV Total energy + Delta-G solvation = -2600.439821 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.55256 -37.85919 -35.66624 -34.69682 -33.23766 -30.06461 -28.67168 -27.26431 -26.57988 -25.64158 -23.45595 -22.14555 -21.07497 -20.41311 -18.39881 -17.01072 -16.98329 -16.60435 -15.86522 -15.56974 -15.49125 -15.06062 -14.58356 -14.38123 -14.05844 -13.84019 -13.54560 -13.48050 -13.12633 -12.87610 -12.84507 -12.63927 -12.40476 -12.24553 -12.17787 -12.01054 -11.67001 -11.59290 -11.35596 -11.32869 -11.10170 -10.87174 -10.47848 -9.24595 -8.95008 -8.08984 -6.20450 1.43777 1.45807 1.53538 2.44859 2.97255 3.19083 3.58829 3.86856 3.95811 4.10749 4.18256 4.31971 4.36845 4.47133 4.48171 4.55804 4.67872 4.71850 4.77852 4.84548 4.86377 4.87576 4.95706 4.99581 5.04387 5.09924 5.14775 5.32989 5.35067 5.39909 5.47949 5.51409 5.60507 5.68845 5.82250 6.12495 6.27673 6.30229 6.65688 6.83818 6.94611 7.49636 8.96457 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.037762 B = 0.004907 C = 0.004726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.301369 B = 5705.229103 C = 5923.412164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.214 3.786 3 H 0.000 1.000 4 C -0.516 4.516 5 H 0.054 0.946 6 C 0.008 3.992 7 N -0.923 5.923 8 Si 0.962 3.038 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.687 5.687 13 C 0.069 3.931 14 C -0.069 4.069 15 H 0.068 0.932 16 C -0.104 4.104 17 C -0.106 4.106 18 C -0.105 4.105 19 C 0.050 3.950 20 N -0.542 5.542 21 C 0.026 3.974 22 C 0.068 3.932 23 H 0.023 0.977 24 H 0.031 0.969 25 H 0.062 0.938 26 H 0.261 0.739 27 H 0.329 0.671 28 H 0.054 0.946 29 H 0.015 0.985 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.034 0.966 38 H 0.026 0.974 39 H 0.082 0.918 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.909 -4.451 -18.428 18.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.106 3.894 3 H 0.018 0.982 4 C -0.555 4.555 5 H 0.072 0.928 6 C -0.190 4.190 7 N -0.564 5.564 8 Si 0.787 3.213 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.196 1.196 12 N -0.318 5.318 13 C -0.061 4.061 14 C -0.088 4.088 15 H 0.087 0.913 16 C -0.143 4.143 17 C -0.144 4.144 18 C -0.143 4.143 19 C -0.079 4.079 20 N -0.265 5.265 21 C -0.122 4.122 22 C -0.059 4.059 23 H 0.042 0.958 24 H 0.050 0.950 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.147 0.853 28 H 0.073 0.927 29 H 0.033 0.967 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.053 0.947 38 H 0.045 0.955 39 H 0.101 0.899 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 2.014 -4.337 -18.112 18.733 hybrid contribution -1.707 0.075 0.975 1.967 sum 0.307 -4.262 -17.138 17.662 Atomic orbital electron populations 1.22226 1.00065 0.99126 0.99980 1.18939 0.89991 0.92690 0.87795 0.98211 1.21432 1.30466 1.12496 0.91105 0.92786 1.25730 0.95438 0.95879 1.01915 1.70004 1.38066 1.24258 1.24042 0.85560 0.78633 0.78678 0.78405 1.19950 1.20926 1.19597 1.60735 1.57785 1.09605 1.03654 1.21998 0.98081 0.95416 0.90620 1.20077 0.99690 0.95560 0.93506 0.91348 1.21325 1.00301 0.97410 0.95219 1.21134 0.98026 0.99105 0.96132 1.21923 0.96737 0.98499 0.97138 1.22019 0.96977 0.97199 0.91688 1.61545 1.59314 1.03317 1.02346 1.22505 0.96722 0.89716 1.03281 1.20958 0.95962 0.95366 0.93645 0.95827 0.95002 0.91931 0.92998 0.85292 0.92733 0.96695 0.92062 0.92018 0.92882 0.91816 0.91602 0.91029 0.90709 0.94749 0.95524 0.89906 0.91728 0.92266 0.95262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.60 8.94 71.98 0.64 -6.96 16 2 C 0.21 11.17 2.57 44.17 0.11 11.28 16 3 H 0.00 0.00 7.80 -2.39 -0.02 -0.02 16 4 C -0.52 -29.37 8.84 25.60 0.23 -29.15 16 5 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 6 C 0.01 0.47 5.30 84.65 0.45 0.92 16 7 N -0.92 -54.07 11.32 21.45 0.24 -53.83 16 8 Si 0.96 44.61 29.54 68.60 2.03 46.64 16 9 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 12 N -0.69 -29.85 6.22 -495.46 -3.08 -32.94 16 13 C 0.07 2.52 4.87 86.30 0.42 2.94 16 14 C -0.07 -2.04 2.15 -12.47 -0.03 -2.06 16 15 H 0.07 2.26 7.59 -2.38 -0.02 2.24 16 16 C -0.10 -2.54 4.95 30.28 0.15 -2.39 16 17 C -0.11 -2.25 5.42 30.21 0.16 -2.08 16 18 C -0.10 -1.87 6.15 31.39 0.19 -1.68 16 19 C 0.05 0.97 5.18 87.16 0.45 1.43 16 20 N -0.54 -12.70 4.48 -938.13 -4.21 -16.91 16 21 C 0.03 0.51 9.19 127.69 1.17 1.68 16 22 C 0.07 1.87 4.06 83.94 0.34 2.21 16 23 H 0.02 1.02 7.45 -2.39 -0.02 1.00 16 24 H 0.03 1.48 8.13 -2.38 -0.02 1.46 16 25 H 0.06 3.43 6.07 -2.39 -0.01 3.41 16 26 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 27 H 0.33 13.46 6.57 -89.70 -0.59 12.87 16 28 H 0.05 2.10 7.92 -2.39 -0.02 2.08 16 29 H 0.01 0.54 7.43 -2.39 -0.02 0.53 16 30 H 0.06 1.42 7.15 -2.39 -0.02 1.40 16 31 H 0.06 1.51 7.93 -2.39 -0.02 1.49 16 32 H 0.05 1.29 7.38 -2.38 -0.02 1.27 16 33 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.07 1.22 7.49 -2.39 -0.02 1.20 16 37 H 0.03 0.71 6.51 -2.39 -0.02 0.69 16 38 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.08 1.34 8.01 -2.39 -0.02 1.33 16 40 H 0.06 1.36 8.05 -2.38 -0.02 1.34 16 41 H 0.06 1.78 5.94 -2.39 -0.01 1.76 16 42 H 0.03 0.80 7.23 -2.39 -0.02 0.79 16 Total: -1.00 -60.45 313.82 -0.34 -60.79 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 0.38 Total: 20.10 kcal Atomic # 6 Polarization: -28.15 SS G_CDS: 4.30 Total: -23.85 kcal Atomic # 7 Polarization: -96.63 SS G_CDS: -7.05 Total: -103.67 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -60.45 -0.34 -60.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700809436.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.537 kcal (2) G-P(sol) polarization free energy of solvation -60.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds