Wall clock time and date at job start Mon Mar 30 2020 03:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47156 * 2 1 4 4 C 1.50709 * 109.47050 * 239.99885 * 2 1 3 5 5 H 1.07998 * 119.99979 * 240.00079 * 4 2 1 6 6 C 1.37876 * 119.99606 * 60.00453 * 4 2 1 7 7 N 1.31515 * 120.00197 * 359.97438 * 6 4 2 8 8 Si 1.86808 * 119.99610 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47037 * 89.99567 * 8 6 4 10 10 H 1.48498 * 109.46892 * 209.99819 * 8 6 4 11 11 H 1.48500 * 109.47131 * 329.99834 * 8 6 4 12 12 N 1.46898 * 109.47053 * 120.00020 * 2 1 3 13 13 C 1.46897 * 111.00405 * 275.00058 * 12 2 1 14 14 C 1.52997 * 109.47567 * 179.97438 * 13 12 2 15 15 H 1.09002 * 109.54067 * 55.17697 * 14 13 12 16 16 C 1.50754 * 109.62003 * 175.40291 * 14 13 12 17 17 C 1.54164 * 112.61093 * 212.92149 * 16 14 13 18 18 C 1.53822 * 111.97247 * 318.48311 * 17 16 14 19 19 C 1.50816 * 111.61982 * 319.04260 * 18 17 16 20 20 N 1.47636 * 108.03769 * 95.06165 * 19 18 17 21 21 C 1.46894 * 110.99781 * 150.32598 * 20 19 18 22 22 C 1.39783 * 114.76457 * 277.18537 * 20 19 18 23 23 H 1.08998 * 109.47231 * 300.00544 * 1 2 3 24 24 H 1.09007 * 109.46751 * 60.00109 * 1 2 3 25 25 H 1.09005 * 109.47541 * 179.97438 * 1 2 3 26 26 H 0.96999 * 119.99253 * 180.02562 * 7 6 4 27 27 H 1.00904 * 111.00259 * 151.04019 * 12 2 1 28 28 H 1.08996 * 109.46996 * 59.99479 * 13 12 2 29 29 H 1.09003 * 109.46770 * 300.00351 * 13 12 2 30 30 H 1.09005 * 108.85402 * 333.73164 * 16 14 13 31 31 H 1.09007 * 108.85002 * 92.11285 * 16 14 13 32 32 H 1.09000 * 108.97887 * 197.84750 * 17 16 14 33 33 H 1.09001 * 108.98349 * 79.12714 * 17 16 14 34 34 H 1.08999 * 109.04866 * 198.49015 * 18 17 16 35 35 H 1.08999 * 109.04826 * 79.59732 * 18 17 16 36 36 H 1.09001 * 109.74629 * 214.68968 * 19 18 17 37 37 H 1.08993 * 109.74748 * 335.42184 * 19 18 17 38 38 H 1.09008 * 109.47067 * 63.95887 * 21 20 19 39 39 H 1.09005 * 109.46982 * 183.94729 * 21 20 19 40 40 H 1.08997 * 109.47732 * 303.95033 * 21 20 19 41 41 H 1.08994 * 109.02247 * 182.86870 * 22 20 19 42 42 H 1.08997 * 109.01776 * 301.76867 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1196 -4.0080 9 1 1.3448 -2.1616 -4.4124 10 1 2.4873 -0.1402 -5.1120 11 1 3.6308 -1.7566 -3.7120 12 7 2.0196 -0.6925 1.1994 13 6 2.0824 0.2225 2.3469 14 6 2.5949 -0.5333 3.5745 15 1 3.5521 -1.0000 3.3419 16 6 2.7679 0.4265 4.7241 17 6 3.9407 0.0405 5.6472 18 6 3.9981 -1.4755 5.9015 19 6 2.6223 -2.0558 6.1140 20 7 2.1419 -2.5788 4.8197 21 6 1.2302 -3.7137 5.0163 22 6 1.5739 -1.6204 3.9753 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 0.7083 1.1609 -3.4844 27 1 2.9172 -1.1206 1.0287 28 1 1.0871 0.6162 2.5525 29 1 2.7588 1.0461 2.1182 30 1 2.9474 1.4251 4.3253 31 1 1.8490 0.4434 5.3102 32 1 3.8257 0.5557 6.6008 33 1 4.8753 0.3580 5.1848 34 1 4.6049 -1.6650 6.7869 35 1 4.4612 -1.9628 5.0435 36 1 2.6725 -2.8651 6.8424 37 1 1.9463 -1.2791 6.4713 38 1 0.3377 -3.3758 5.5430 39 1 0.9465 -4.1239 4.0470 40 1 1.7297 -4.4834 5.6044 41 1 1.2073 -2.1128 3.0747 42 1 0.7360 -1.1476 4.4876 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700809438.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:07 Heat of formation + Delta-G solvation = -8.416971 kcal Electronic energy + Delta-G solvation = -18128.956347 eV Core-core repulsion = 15529.203196 eV Total energy + Delta-G solvation = -2599.753151 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.44739 -36.05004 -34.47585 -33.15474 -31.46743 -28.47476 -27.49897 -25.65840 -25.09310 -24.33189 -22.10387 -20.38171 -19.70727 -19.08878 -16.49508 -15.67823 -15.53227 -14.92851 -14.76599 -14.72731 -13.89375 -13.63139 -13.40191 -12.99649 -12.63712 -12.30945 -12.15662 -11.95179 -11.85618 -11.36933 -11.13421 -10.96089 -10.81357 -10.79185 -10.61949 -10.45140 -10.26014 -10.10189 -10.09332 -9.95102 -9.68516 -8.77161 -8.43632 -8.02999 -7.17341 -5.99104 -4.05171 3.32280 3.38426 3.41842 4.09795 4.43212 4.83019 4.89734 5.05672 5.14745 5.25649 5.32612 5.36550 5.45112 5.57999 5.64145 5.68263 5.74126 5.88220 5.91622 5.97139 6.01637 6.10780 6.20619 6.25819 6.29177 6.42436 6.45953 6.64623 6.77031 6.93427 7.18221 7.28691 7.30529 7.56231 7.63108 7.82568 7.95216 8.32195 8.46292 8.74621 9.06701 9.60766 11.07260 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.033664 B = 0.005082 C = 0.004912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.554261 B = 5508.654842 C = 5698.771956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.211 3.789 3 H -0.001 1.001 4 C -0.516 4.516 5 H 0.060 0.940 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.687 5.687 13 C 0.068 3.932 14 C -0.079 4.079 15 H 0.077 0.923 16 C -0.117 4.117 17 C -0.115 4.115 18 C -0.118 4.118 19 C 0.064 3.936 20 N -0.557 5.557 21 C 0.033 3.967 22 C 0.083 3.917 23 H 0.002 0.998 24 H 0.079 0.921 25 H 0.030 0.970 26 H 0.260 0.740 27 H 0.330 0.670 28 H 0.060 0.940 29 H 0.019 0.981 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.039 0.961 38 H 0.019 0.981 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.094 0.906 42 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.068 -3.609 16.444 17.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.103 3.897 3 H 0.016 0.984 4 C -0.555 4.555 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.530 5.530 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.318 5.318 13 C -0.063 4.063 14 C -0.099 4.099 15 H 0.095 0.905 16 C -0.155 4.155 17 C -0.153 4.153 18 C -0.156 4.156 19 C -0.063 4.063 20 N -0.281 5.281 21 C -0.115 4.115 22 C -0.046 4.046 23 H 0.022 0.978 24 H 0.098 0.902 25 H 0.049 0.951 26 H 0.070 0.930 27 H 0.147 0.853 28 H 0.078 0.922 29 H 0.037 0.963 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.057 0.943 38 H 0.038 0.962 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.112 0.888 42 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges 2.734 -3.869 16.229 16.906 hybrid contribution 0.286 0.513 -0.697 0.911 sum 3.020 -3.356 15.532 16.175 Atomic orbital electron populations 1.21702 0.98034 0.99201 0.99204 1.19085 0.92508 0.92274 0.85786 0.98356 1.21286 1.31277 1.12403 0.90492 0.92220 1.24925 0.95113 0.94991 0.99035 1.69905 1.36800 1.22956 1.23359 0.86531 0.79227 0.79311 0.82511 1.20653 1.21338 1.19939 1.60684 1.32099 1.33045 1.05925 1.21935 0.99473 0.93804 0.91071 1.21027 0.99576 0.95105 0.94154 0.90480 1.21486 0.98075 0.99393 0.96541 1.21892 0.98652 0.95884 0.98862 1.21403 0.96765 0.95431 1.01973 1.21799 0.96370 0.98040 0.90058 1.58840 1.42738 1.11515 1.14975 1.22315 0.94087 0.93298 1.01813 1.20977 0.94195 0.92778 0.96653 0.97849 0.90241 0.95063 0.93006 0.85252 0.92188 0.96285 0.92198 0.92836 0.92819 0.92307 0.92474 0.90466 0.91586 0.94312 0.96233 0.91175 0.91958 0.88796 0.97349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.12 9.19 37.16 0.34 -2.78 16 2 C 0.21 5.43 2.60 -68.86 -0.18 5.25 16 3 H 0.00 -0.03 7.80 -51.93 -0.40 -0.44 16 4 C -0.52 -14.33 8.59 -34.44 -0.30 -14.62 16 5 H 0.06 1.64 7.62 -52.49 -0.40 1.24 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.79 11.32 55.43 0.63 -25.16 16 8 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 12 N -0.69 -14.75 5.54 -107.96 -0.60 -15.35 16 13 C 0.07 1.24 4.71 -3.83 -0.02 1.22 16 14 C -0.08 -1.20 2.05 -91.00 -0.19 -1.38 16 15 H 0.08 1.22 7.11 -51.93 -0.37 0.85 16 16 C -0.12 -1.51 4.88 -27.25 -0.13 -1.64 16 17 C -0.12 -1.27 5.91 -25.70 -0.15 -1.42 16 18 C -0.12 -1.28 5.41 -27.40 -0.15 -1.43 16 19 C 0.06 0.73 5.37 -4.51 -0.02 0.70 16 20 N -0.56 -7.40 4.19 -248.32 -1.04 -8.44 16 21 C 0.03 0.38 9.44 60.06 0.57 0.94 16 22 C 0.08 1.25 4.30 -6.74 -0.03 1.22 16 23 H 0.00 0.06 7.45 -51.93 -0.39 -0.33 16 24 H 0.08 2.19 6.07 -51.92 -0.32 1.87 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.33 7.05 8.22 -39.29 -0.32 6.73 16 28 H 0.06 1.14 7.44 -51.93 -0.39 0.75 16 29 H 0.02 0.36 7.90 -51.93 -0.41 -0.05 16 30 H 0.06 0.78 7.62 -51.93 -0.40 0.38 16 31 H 0.05 0.69 6.58 -51.92 -0.34 0.34 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.96 7.26 -51.93 -0.38 0.58 16 36 H 0.07 0.65 7.71 -51.93 -0.40 0.25 16 37 H 0.04 0.45 6.66 -51.93 -0.35 0.10 16 38 H 0.02 0.21 8.14 -51.92 -0.42 -0.21 16 39 H 0.07 0.84 7.94 -51.93 -0.41 0.43 16 40 H 0.06 0.62 7.97 -51.93 -0.41 0.21 16 41 H 0.09 1.63 7.09 -51.93 -0.37 1.27 16 42 H 0.01 0.13 7.54 -51.93 -0.39 -0.26 16 LS Contribution 314.64 15.07 4.74 4.74 Total: -1.00 -28.22 314.64 -9.33 -37.55 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -7.69 Total: 2.51 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: -0.35 Total: -12.32 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: -1.01 Total: -48.95 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.22 -9.33 -37.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700809438.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.133 kcal (2) G-P(sol) polarization free energy of solvation -28.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds