Wall clock time and date at job start Mon Mar 30 2020 03:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47156 * 2 1 4 4 C 1.50709 * 109.47050 * 239.99885 * 2 1 3 5 5 H 1.07998 * 119.99979 * 240.00079 * 4 2 1 6 6 C 1.37876 * 119.99606 * 60.00453 * 4 2 1 7 7 N 1.31515 * 120.00197 * 359.97438 * 6 4 2 8 8 Si 1.86808 * 119.99610 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47037 * 89.99567 * 8 6 4 10 10 H 1.48498 * 109.46892 * 209.99819 * 8 6 4 11 11 H 1.48500 * 109.47131 * 329.99834 * 8 6 4 12 12 N 1.46898 * 109.47053 * 120.00020 * 2 1 3 13 13 C 1.46897 * 111.00405 * 275.00058 * 12 2 1 14 14 C 1.52997 * 109.47567 * 179.97438 * 13 12 2 15 15 H 1.09002 * 109.54067 * 55.17697 * 14 13 12 16 16 C 1.50754 * 109.62003 * 175.40291 * 14 13 12 17 17 C 1.54164 * 112.61093 * 212.92149 * 16 14 13 18 18 C 1.53822 * 111.97247 * 318.48311 * 17 16 14 19 19 C 1.50816 * 111.61982 * 319.04260 * 18 17 16 20 20 N 1.47636 * 108.03769 * 95.06165 * 19 18 17 21 21 C 1.46894 * 110.99781 * 150.32598 * 20 19 18 22 22 C 1.39783 * 114.76457 * 277.18537 * 20 19 18 23 23 H 1.08998 * 109.47231 * 300.00544 * 1 2 3 24 24 H 1.09007 * 109.46751 * 60.00109 * 1 2 3 25 25 H 1.09005 * 109.47541 * 179.97438 * 1 2 3 26 26 H 0.96999 * 119.99253 * 180.02562 * 7 6 4 27 27 H 1.00904 * 111.00259 * 151.04019 * 12 2 1 28 28 H 1.08996 * 109.46996 * 59.99479 * 13 12 2 29 29 H 1.09003 * 109.46770 * 300.00351 * 13 12 2 30 30 H 1.09005 * 108.85402 * 333.73164 * 16 14 13 31 31 H 1.09007 * 108.85002 * 92.11285 * 16 14 13 32 32 H 1.09000 * 108.97887 * 197.84750 * 17 16 14 33 33 H 1.09001 * 108.98349 * 79.12714 * 17 16 14 34 34 H 1.08999 * 109.04866 * 198.49015 * 18 17 16 35 35 H 1.08999 * 109.04826 * 79.59732 * 18 17 16 36 36 H 1.09001 * 109.74629 * 214.68968 * 19 18 17 37 37 H 1.08993 * 109.74748 * 335.42184 * 19 18 17 38 38 H 1.09008 * 109.47067 * 63.95887 * 21 20 19 39 39 H 1.09005 * 109.46982 * 183.94729 * 21 20 19 40 40 H 1.08997 * 109.47732 * 303.95033 * 21 20 19 41 41 H 1.08994 * 109.02247 * 182.86870 * 22 20 19 42 42 H 1.08997 * 109.01776 * 301.76867 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1196 -4.0080 9 1 1.3448 -2.1616 -4.4124 10 1 2.4873 -0.1402 -5.1120 11 1 3.6308 -1.7566 -3.7120 12 7 2.0196 -0.6925 1.1994 13 6 2.0824 0.2225 2.3469 14 6 2.5949 -0.5333 3.5745 15 1 3.5521 -1.0000 3.3419 16 6 2.7679 0.4265 4.7241 17 6 3.9407 0.0405 5.6472 18 6 3.9981 -1.4755 5.9015 19 6 2.6223 -2.0558 6.1140 20 7 2.1419 -2.5788 4.8197 21 6 1.2302 -3.7137 5.0163 22 6 1.5739 -1.6204 3.9753 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 0.7083 1.1609 -3.4844 27 1 2.9172 -1.1206 1.0287 28 1 1.0871 0.6162 2.5525 29 1 2.7588 1.0461 2.1182 30 1 2.9474 1.4251 4.3253 31 1 1.8490 0.4434 5.3102 32 1 3.8257 0.5557 6.6008 33 1 4.8753 0.3580 5.1848 34 1 4.6049 -1.6650 6.7869 35 1 4.4612 -1.9628 5.0435 36 1 2.6725 -2.8651 6.8424 37 1 1.9463 -1.2791 6.4713 38 1 0.3377 -3.3758 5.5430 39 1 0.9465 -4.1239 4.0470 40 1 1.7297 -4.4834 5.6044 41 1 1.2073 -2.1128 3.0747 42 1 0.7360 -1.1476 4.4876 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700809438.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:07 Heat of formation + Delta-G solvation = -26.118526 kcal Electronic energy + Delta-G solvation = -18129.723944 eV Core-core repulsion = 15529.203196 eV Total energy + Delta-G solvation = -2600.520748 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.54377 -37.76662 -35.69335 -34.71562 -33.10235 -30.17073 -28.57334 -27.42818 -26.66997 -25.49983 -23.41604 -21.74496 -21.43433 -20.16988 -18.49729 -17.00335 -16.69917 -16.54976 -16.15919 -15.73892 -15.52346 -15.15077 -14.63710 -14.51006 -13.90938 -13.82148 -13.48462 -13.12456 -13.07560 -12.93002 -12.81115 -12.61278 -12.47441 -12.22433 -12.12797 -12.09823 -11.76210 -11.59533 -11.28237 -11.18524 -11.10479 -10.84581 -10.56700 -9.06143 -9.00803 -8.12883 -6.27099 1.42678 1.43578 1.53974 2.42094 3.08851 3.15586 3.59509 3.83627 4.02586 4.02999 4.23058 4.26865 4.39796 4.53106 4.58116 4.64824 4.70757 4.74882 4.82579 4.83840 4.87618 4.96586 5.00976 5.06898 5.07072 5.16161 5.22124 5.26828 5.32879 5.38672 5.46715 5.54199 5.58652 5.68341 5.86866 6.22486 6.31627 6.49326 6.55701 6.79685 7.01853 7.43522 8.92932 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.033664 B = 0.005082 C = 0.004912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.554261 B = 5508.654842 C = 5698.771956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.215 3.785 3 H -0.034 1.034 4 C -0.536 4.536 5 H 0.059 0.941 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.964 3.036 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.267 1.267 12 N -0.681 5.681 13 C 0.071 3.929 14 C -0.067 4.067 15 H 0.071 0.929 16 C -0.114 4.114 17 C -0.112 4.112 18 C -0.115 4.115 19 C 0.064 3.936 20 N -0.569 5.569 21 C 0.033 3.967 22 C 0.095 3.905 23 H 0.019 0.981 24 H 0.056 0.944 25 H 0.027 0.973 26 H 0.262 0.738 27 H 0.331 0.669 28 H 0.053 0.947 29 H 0.012 0.988 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.085 0.915 37 H 0.038 0.962 38 H 0.024 0.976 39 H 0.058 0.942 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.893 -4.489 17.762 18.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 H -0.017 1.017 4 C -0.575 4.575 5 H 0.077 0.923 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.789 3.211 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.192 1.192 12 N -0.311 5.311 13 C -0.059 4.059 14 C -0.087 4.087 15 H 0.089 0.911 16 C -0.152 4.152 17 C -0.149 4.149 18 C -0.153 4.153 19 C -0.062 4.062 20 N -0.294 5.294 21 C -0.115 4.115 22 C -0.034 4.034 23 H 0.038 0.962 24 H 0.075 0.925 25 H 0.046 0.954 26 H 0.071 0.929 27 H 0.148 0.852 28 H 0.071 0.929 29 H 0.031 0.969 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.104 0.896 37 H 0.057 0.943 38 H 0.043 0.957 39 H 0.077 0.923 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges 3.564 -4.757 17.572 18.550 hybrid contribution 0.018 0.800 -1.058 1.327 sum 3.582 -3.957 16.514 17.355 Atomic orbital electron populations 1.21520 0.97840 0.98736 0.98819 1.18905 0.92654 0.90638 0.87147 1.01668 1.21596 1.31630 1.12632 0.91623 0.92276 1.25751 0.95181 0.95658 1.02090 1.70033 1.37568 1.24126 1.24139 0.85471 0.78872 0.78174 0.78579 1.20104 1.20876 1.19178 1.60612 1.32121 1.33178 1.05202 1.21970 0.99112 0.93549 0.91260 1.20886 0.98966 0.95334 0.93478 0.91073 1.21442 0.99327 0.98499 0.95969 1.21875 0.97562 0.96355 0.99137 1.21391 0.96725 0.94912 1.02287 1.21892 0.96336 0.98764 0.89256 1.58829 1.43000 1.11447 1.16077 1.22346 0.94313 0.93158 1.01649 1.20738 0.93954 0.92741 0.96011 0.96236 0.92547 0.95370 0.92863 0.85170 0.92896 0.96943 0.92460 0.92541 0.90951 0.92197 0.90187 0.92154 0.89622 0.94335 0.95738 0.92287 0.89949 0.91581 0.97753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.72 9.19 71.98 0.66 -5.06 16 2 C 0.22 11.33 2.60 44.17 0.11 11.44 16 3 H -0.03 -2.00 7.80 -2.39 -0.02 -2.01 16 4 C -0.54 -30.15 8.59 25.60 0.22 -29.93 16 5 H 0.06 3.25 7.62 -2.91 -0.02 3.23 16 6 C 0.01 0.68 5.30 84.65 0.45 1.13 16 7 N -0.92 -53.91 11.32 21.45 0.24 -53.67 16 8 Si 0.96 44.08 29.54 68.60 2.03 46.11 16 9 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 12 N -0.68 -29.77 5.54 -495.46 -2.74 -32.51 16 13 C 0.07 2.64 4.71 86.30 0.41 3.05 16 14 C -0.07 -2.00 2.05 -11.04 -0.02 -2.02 16 15 H 0.07 2.22 7.11 -2.39 -0.02 2.20 16 16 C -0.11 -2.79 4.88 30.26 0.15 -2.64 16 17 C -0.11 -2.18 5.91 31.27 0.18 -2.00 16 18 C -0.12 -2.19 5.41 30.16 0.16 -2.03 16 19 C 0.06 1.28 5.37 85.45 0.46 1.73 16 20 N -0.57 -14.31 4.19 -939.56 -3.94 -18.24 16 21 C 0.03 0.71 9.44 127.69 1.21 1.91 16 22 C 0.10 2.82 4.30 88.07 0.38 3.20 16 23 H 0.02 0.89 7.45 -2.39 -0.02 0.87 16 24 H 0.06 3.17 6.07 -2.38 -0.01 3.16 16 25 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 26 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 27 H 0.33 14.35 8.22 -89.69 -0.74 13.62 16 28 H 0.05 2.03 7.44 -2.39 -0.02 2.01 16 29 H 0.01 0.48 7.90 -2.39 -0.02 0.46 16 30 H 0.06 1.43 7.62 -2.38 -0.02 1.41 16 31 H 0.06 1.35 6.58 -2.38 -0.02 1.33 16 32 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.06 1.38 7.26 -2.39 -0.02 1.36 16 36 H 0.09 1.39 7.71 -2.39 -0.02 1.37 16 37 H 0.04 0.79 6.66 -2.39 -0.02 0.77 16 38 H 0.02 0.50 8.14 -2.38 -0.02 0.48 16 39 H 0.06 1.39 7.94 -2.38 -0.02 1.37 16 40 H 0.08 1.44 7.97 -2.39 -0.02 1.42 16 41 H 0.07 2.32 7.09 -2.39 -0.02 2.30 16 42 H 0.00 0.14 7.54 -2.39 -0.02 0.12 16 Total: -1.00 -60.27 314.64 0.19 -60.08 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.23 Total: 19.43 kcal Atomic # 6 Polarization: -25.57 SS G_CDS: 4.37 Total: -21.20 kcal Atomic # 7 Polarization: -97.98 SS G_CDS: -6.44 Total: -104.42 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -60.27 0.19 -60.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700809438.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.965 kcal (2) G-P(sol) polarization free energy of solvation -60.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds