Wall clock time and date at job start Mon Mar 30 2020 03:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47229 * 2 1 4 4 C 1.50700 * 109.47658 * 239.99782 * 2 1 3 5 5 H 1.07997 * 120.00431 * 240.00565 * 4 2 1 6 6 C 1.37879 * 119.99780 * 59.99382 * 4 2 1 7 7 N 1.31511 * 120.00003 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99979 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.46931 * 90.00443 * 8 6 4 10 10 H 1.48507 * 109.46940 * 210.00337 * 8 6 4 11 11 H 1.48493 * 109.47084 * 330.00309 * 8 6 4 12 12 N 1.46901 * 109.47369 * 119.99876 * 2 1 3 13 13 C 1.47846 * 111.00359 * 159.97390 * 12 2 1 14 14 C 1.54903 * 104.79768 * 146.36391 * 13 12 2 15 15 C 1.55140 * 101.65302 * 322.92757 * 14 13 12 16 16 C 1.47453 * 110.99957 * 280.81545 * 12 2 1 17 17 H 1.08995 * 109.88810 * 117.16959 * 16 12 2 18 18 C 1.53004 * 109.88392 * 356.14679 * 16 12 2 19 19 C 1.53008 * 109.46631 * 177.06549 * 18 16 12 20 20 N 1.46899 * 109.46984 * 177.44450 * 19 18 16 21 21 C 1.46895 * 110.99819 * 169.99910 * 20 19 18 22 22 C 1.46906 * 110.99968 * 293.95705 * 20 19 18 23 23 H 1.09005 * 109.46617 * 167.76612 * 1 2 3 24 24 H 1.09000 * 109.47046 * 287.76616 * 1 2 3 25 25 H 1.09003 * 109.47099 * 47.77094 * 1 2 3 26 26 H 0.97001 * 120.00335 * 179.97438 * 7 6 4 27 27 H 1.09004 * 110.37281 * 265.19516 * 13 12 2 28 28 H 1.09001 * 110.37106 * 27.42257 * 13 12 2 29 29 H 1.09004 * 110.99535 * 81.01895 * 14 13 12 30 30 H 1.09002 * 110.99450 * 204.80030 * 14 13 12 31 31 H 1.09000 * 110.71179 * 277.27016 * 15 14 13 32 32 H 1.09008 * 110.70798 * 154.03608 * 15 14 13 33 33 H 1.08996 * 109.47113 * 57.06891 * 18 16 12 34 34 H 1.08995 * 109.47006 * 297.06235 * 18 16 12 35 35 H 1.08998 * 109.47063 * 57.44645 * 19 18 16 36 36 H 1.08997 * 109.47222 * 297.44648 * 19 18 16 37 37 H 1.09002 * 109.47056 * 60.00697 * 21 20 19 38 38 H 1.09007 * 109.46746 * 179.97438 * 21 20 19 39 39 H 1.08994 * 109.47563 * 299.99916 * 21 20 19 40 40 H 1.09003 * 109.47277 * 59.99858 * 22 20 19 41 41 H 1.08998 * 109.46853 * 180.02562 * 22 20 19 42 42 H 1.08996 * 109.46906 * 299.99708 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3215 -1.1205 -4.0079 9 1 1.3430 -2.1618 -4.4118 10 1 2.4867 -0.1414 -5.1123 11 1 3.6294 -1.7583 -3.7121 12 7 2.0197 -0.6925 1.1994 13 6 3.4189 -1.1354 1.0214 14 6 4.0534 -1.0178 2.4296 15 6 3.3756 0.2679 2.9723 16 6 1.9523 0.1864 2.3815 17 1 1.2663 -0.2335 3.1171 18 6 1.4803 1.5814 1.9666 19 6 1.3436 2.4640 3.2090 20 7 0.9495 3.8203 2.8051 21 6 0.5790 4.6305 3.9731 22 6 2.0156 4.4696 2.0306 23 1 -0.3633 -1.0044 -0.2178 24 1 -0.3633 0.3136 0.9787 25 1 -0.3633 0.6907 -0.7610 26 1 0.7094 1.1616 -3.4844 27 1 3.4488 -2.1692 0.6769 28 1 3.9357 -0.4857 0.3150 29 1 3.8013 -1.8815 3.0449 30 1 5.1339 -0.8913 2.3618 31 1 3.8921 1.1575 2.6119 32 1 3.3419 0.2554 4.0618 33 1 0.5143 1.5046 1.4675 34 1 2.2073 2.0232 1.2852 35 1 2.2985 2.5039 3.7330 36 1 0.5838 2.0463 3.8695 37 1 1.4297 4.7010 4.6510 38 1 0.2920 5.6298 3.6457 39 1 -0.2590 4.1622 4.4892 40 1 2.2219 3.8842 1.1345 41 1 1.6979 5.4723 1.7448 42 1 2.9182 4.5343 2.6382 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701463505.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:34 Heat of formation + Delta-G solvation = 18.716332 kcal Electronic energy + Delta-G solvation = -18699.360968 eV Core-core repulsion = 16100.784405 eV Total energy + Delta-G solvation = -2598.576563 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.13126 -37.00886 -33.71814 -31.87838 -31.00245 -27.50293 -27.47726 -27.03558 -24.98388 -23.62140 -21.30034 -21.00444 -20.20239 -18.25291 -16.19539 -15.65079 -15.27408 -14.98331 -14.84209 -14.27957 -14.11129 -13.63020 -13.03913 -12.55017 -12.35541 -12.30073 -11.94267 -11.74485 -11.53780 -11.51303 -11.25058 -10.92051 -10.84062 -10.65352 -10.52904 -10.46820 -10.23854 -9.91656 -9.88359 -9.73783 -9.45605 -8.64212 -8.40502 -8.14347 -7.00363 -5.96152 -3.98894 3.33009 3.39508 3.42242 4.14753 4.45460 5.00927 5.18837 5.25871 5.31054 5.34994 5.38641 5.44932 5.55634 5.60820 5.74681 5.81886 5.88399 5.94063 6.01920 6.03805 6.11690 6.21761 6.24999 6.38382 6.45327 6.76977 6.77815 6.82906 6.95440 7.05594 7.20161 7.24363 7.25758 7.34841 7.63283 7.82860 7.92540 8.21058 8.42483 8.69172 9.07606 9.65169 11.11263 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022480 B = 0.007687 C = 0.006353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.228024 B = 3641.804494 C = 4406.499647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.198 3.802 3 H 0.018 0.982 4 C -0.513 4.513 5 H 0.061 0.939 6 C 0.061 3.939 7 N -0.889 5.889 8 Si 0.892 3.108 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.276 1.276 12 N -0.524 5.524 13 C 0.062 3.938 14 C -0.136 4.136 15 C -0.135 4.135 16 C 0.078 3.922 17 H 0.068 0.932 18 C -0.142 4.142 19 C 0.059 3.941 20 N -0.545 5.545 21 C 0.026 3.974 22 C 0.023 3.977 23 H 0.031 0.969 24 H 0.016 0.984 25 H 0.073 0.927 26 H 0.259 0.741 27 H 0.066 0.934 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.067 0.933 35 H 0.027 0.973 36 H 0.068 0.932 37 H 0.019 0.981 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.845 4.214 11.334 12.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.092 3.908 3 H 0.036 0.964 4 C -0.552 4.552 5 H 0.080 0.920 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.720 3.280 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.201 1.201 12 N -0.249 5.249 13 C -0.066 4.066 14 C -0.174 4.174 15 C -0.173 4.173 16 C -0.032 4.032 17 H 0.086 0.914 18 C -0.180 4.180 19 C -0.070 4.070 20 N -0.269 5.269 21 C -0.123 4.123 22 C -0.125 4.125 23 H 0.050 0.950 24 H 0.035 0.965 25 H 0.091 0.909 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.116 0.884 34 H 0.086 0.914 35 H 0.045 0.955 36 H 0.086 0.914 37 H 0.038 0.962 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 2.019 3.863 10.941 11.777 hybrid contribution 1.503 0.364 -0.527 1.633 sum 3.522 4.227 10.414 11.778 Atomic orbital electron populations 1.21842 0.97711 1.00634 0.97876 1.19568 0.92515 0.93236 0.85530 0.96409 1.21318 1.31246 1.12401 0.90243 0.92047 1.24912 0.95215 0.95042 0.98862 1.69931 1.36811 1.22841 1.23243 0.86601 0.79181 0.79391 0.82836 1.20729 1.21395 1.20054 1.63847 1.18856 1.37548 1.04641 1.22784 0.89166 1.00617 0.94049 1.22778 0.98851 0.97460 0.98290 1.22855 0.97020 0.97959 0.99501 1.22298 0.94842 0.91638 0.94410 0.91434 1.22472 1.04643 0.94293 0.96582 1.22200 0.98370 0.88427 0.97968 1.61938 1.40250 1.02787 1.21939 1.22358 0.99677 0.98101 0.92120 1.22426 0.91880 0.99578 0.98630 0.94957 0.96506 0.90873 0.93113 0.91597 0.93060 0.91696 0.92110 0.92140 0.92264 0.88353 0.91417 0.95451 0.91357 0.96235 0.91716 0.91590 0.90414 0.91819 0.96224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.05 8.18 37.16 0.30 -2.74 16 2 C 0.20 4.93 1.62 -68.87 -0.11 4.82 16 3 H 0.02 0.49 5.33 -51.93 -0.28 0.21 16 4 C -0.51 -14.05 7.51 -34.44 -0.26 -14.31 16 5 H 0.06 1.68 6.22 -52.49 -0.33 1.35 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.40 11.49 55.43 0.64 -24.77 16 8 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 N -0.52 -11.41 5.02 -216.81 -1.09 -12.49 16 13 C 0.06 1.24 5.18 -2.30 -0.01 1.23 16 14 C -0.14 -2.16 7.08 -24.60 -0.17 -2.33 16 15 C -0.13 -2.11 5.46 -24.91 -0.14 -2.24 16 16 C 0.08 1.41 3.19 -66.72 -0.21 1.20 16 17 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 18 C -0.14 -2.58 3.10 -26.73 -0.08 -2.66 16 19 C 0.06 0.88 4.82 -3.82 -0.02 0.86 16 20 N -0.55 -8.13 5.02 -251.26 -1.26 -9.39 16 21 C 0.03 0.31 9.57 60.06 0.57 0.88 16 22 C 0.02 0.33 9.33 60.07 0.56 0.89 16 23 H 0.03 0.82 8.08 -51.93 -0.42 0.40 16 24 H 0.02 0.37 5.83 -51.93 -0.30 0.07 16 25 H 0.07 1.96 6.50 -51.93 -0.34 1.62 16 26 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.07 1.34 7.65 -51.93 -0.40 0.95 16 28 H 0.05 1.13 7.22 -51.93 -0.37 0.75 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.96 7.79 -51.93 -0.40 0.55 16 32 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 33 H 0.10 2.04 4.43 -51.93 -0.23 1.81 16 34 H 0.07 1.36 4.96 -51.93 -0.26 1.10 16 35 H 0.03 0.39 7.30 -51.93 -0.38 0.01 16 36 H 0.07 0.98 8.06 -51.93 -0.42 0.56 16 37 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 39 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 40 H 0.08 1.26 6.42 -51.93 -0.33 0.92 16 41 H 0.06 0.81 8.12 -51.93 -0.42 0.39 16 42 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 310.03 15.07 4.67 4.67 Total: -1.00 -28.43 310.03 -9.12 -37.54 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -7.39 Total: 0.80 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: 0.34 Total: -12.81 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: -1.71 Total: -46.65 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.43 -9.12 -37.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701463505.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.260 kcal (2) G-P(sol) polarization free energy of solvation -28.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds