Wall clock time and date at job start Mon Mar 30 2020 03:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47229 * 2 1 4 4 C 1.50700 * 109.47658 * 239.99782 * 2 1 3 5 5 H 1.07997 * 120.00431 * 240.00565 * 4 2 1 6 6 C 1.37879 * 119.99780 * 59.99382 * 4 2 1 7 7 N 1.31511 * 120.00003 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99979 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.46931 * 90.00443 * 8 6 4 10 10 H 1.48507 * 109.46940 * 210.00337 * 8 6 4 11 11 H 1.48493 * 109.47084 * 330.00309 * 8 6 4 12 12 N 1.46901 * 109.47369 * 119.99876 * 2 1 3 13 13 C 1.47846 * 111.00359 * 159.97390 * 12 2 1 14 14 C 1.54903 * 104.79768 * 146.36391 * 13 12 2 15 15 C 1.55140 * 101.65302 * 322.92757 * 14 13 12 16 16 C 1.47453 * 110.99957 * 280.81545 * 12 2 1 17 17 H 1.08995 * 109.88810 * 117.16959 * 16 12 2 18 18 C 1.53004 * 109.88392 * 356.14679 * 16 12 2 19 19 C 1.53008 * 109.46631 * 177.06549 * 18 16 12 20 20 N 1.46899 * 109.46984 * 177.44450 * 19 18 16 21 21 C 1.46895 * 110.99819 * 169.99910 * 20 19 18 22 22 C 1.46906 * 110.99968 * 293.95705 * 20 19 18 23 23 H 1.09005 * 109.46617 * 167.76612 * 1 2 3 24 24 H 1.09000 * 109.47046 * 287.76616 * 1 2 3 25 25 H 1.09003 * 109.47099 * 47.77094 * 1 2 3 26 26 H 0.97001 * 120.00335 * 179.97438 * 7 6 4 27 27 H 1.09004 * 110.37281 * 265.19516 * 13 12 2 28 28 H 1.09001 * 110.37106 * 27.42257 * 13 12 2 29 29 H 1.09004 * 110.99535 * 81.01895 * 14 13 12 30 30 H 1.09002 * 110.99450 * 204.80030 * 14 13 12 31 31 H 1.09000 * 110.71179 * 277.27016 * 15 14 13 32 32 H 1.09008 * 110.70798 * 154.03608 * 15 14 13 33 33 H 1.08996 * 109.47113 * 57.06891 * 18 16 12 34 34 H 1.08995 * 109.47006 * 297.06235 * 18 16 12 35 35 H 1.08998 * 109.47063 * 57.44645 * 19 18 16 36 36 H 1.08997 * 109.47222 * 297.44648 * 19 18 16 37 37 H 1.09002 * 109.47056 * 60.00697 * 21 20 19 38 38 H 1.09007 * 109.46746 * 179.97438 * 21 20 19 39 39 H 1.08994 * 109.47563 * 299.99916 * 21 20 19 40 40 H 1.09003 * 109.47277 * 59.99858 * 22 20 19 41 41 H 1.08998 * 109.46853 * 180.02562 * 22 20 19 42 42 H 1.08996 * 109.46906 * 299.99708 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3215 -1.1205 -4.0079 9 1 1.3430 -2.1618 -4.4118 10 1 2.4867 -0.1414 -5.1123 11 1 3.6294 -1.7583 -3.7121 12 7 2.0197 -0.6925 1.1994 13 6 3.4189 -1.1354 1.0214 14 6 4.0534 -1.0178 2.4296 15 6 3.3756 0.2679 2.9723 16 6 1.9523 0.1864 2.3815 17 1 1.2663 -0.2335 3.1171 18 6 1.4803 1.5814 1.9666 19 6 1.3436 2.4640 3.2090 20 7 0.9495 3.8203 2.8051 21 6 0.5790 4.6305 3.9731 22 6 2.0156 4.4696 2.0306 23 1 -0.3633 -1.0044 -0.2178 24 1 -0.3633 0.3136 0.9787 25 1 -0.3633 0.6907 -0.7610 26 1 0.7094 1.1616 -3.4844 27 1 3.4488 -2.1692 0.6769 28 1 3.9357 -0.4857 0.3150 29 1 3.8013 -1.8815 3.0449 30 1 5.1339 -0.8913 2.3618 31 1 3.8921 1.1575 2.6119 32 1 3.3419 0.2554 4.0618 33 1 0.5143 1.5046 1.4675 34 1 2.2073 2.0232 1.2852 35 1 2.2985 2.5039 3.7330 36 1 0.5838 2.0463 3.8695 37 1 1.4297 4.7010 4.6510 38 1 0.2920 5.6298 3.6457 39 1 -0.2590 4.1622 4.4892 40 1 2.2219 3.8842 1.1345 41 1 1.6979 5.4723 1.7448 42 1 2.9182 4.5343 2.6382 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701463505.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:34 Heat of formation + Delta-G solvation = -0.464935 kcal Electronic energy + Delta-G solvation = -18700.192730 eV Core-core repulsion = 16100.784405 eV Total energy + Delta-G solvation = -2599.408325 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.67106 -38.20938 -35.63291 -33.40336 -32.77446 -29.26717 -28.55147 -28.39434 -27.01946 -24.90909 -23.06327 -22.34488 -21.62081 -19.92393 -18.08637 -17.25295 -16.71887 -16.45018 -16.21424 -15.79919 -15.48941 -15.07205 -14.59798 -14.23724 -14.05651 -13.45172 -13.33015 -13.19053 -12.97570 -12.88898 -12.74360 -12.64840 -12.57730 -12.31938 -12.16696 -11.95446 -11.77579 -11.69141 -11.50292 -11.35310 -11.11705 -10.66887 -10.51210 -9.24108 -8.76296 -8.09110 -6.18458 1.39873 1.41057 1.50497 2.42765 3.04783 3.19934 3.47573 3.88635 3.95924 4.00811 4.24489 4.27356 4.36030 4.46574 4.55581 4.64252 4.68504 4.70822 4.75802 4.80876 4.91552 4.97740 5.00661 5.01543 5.01780 5.07061 5.12976 5.16275 5.31861 5.38141 5.47466 5.55386 5.58870 5.80446 5.91807 6.10319 6.19241 6.22892 6.46458 6.82639 6.99456 7.49608 8.97404 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022480 B = 0.007687 C = 0.006353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.228024 B = 3641.804494 C = 4406.499647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.207 3.793 3 H -0.006 1.006 4 C -0.529 4.529 5 H 0.057 0.943 6 C 0.013 3.987 7 N -0.917 5.917 8 Si 0.953 3.047 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.269 1.269 12 N -0.538 5.538 13 C 0.058 3.942 14 C -0.122 4.122 15 C -0.125 4.125 16 C 0.072 3.928 17 H 0.080 0.920 18 C -0.128 4.128 19 C 0.069 3.931 20 N -0.570 5.570 21 C 0.027 3.973 22 C 0.027 3.973 23 H 0.016 0.984 24 H 0.036 0.964 25 H 0.046 0.954 26 H 0.259 0.741 27 H 0.057 0.943 28 H 0.023 0.977 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.093 0.907 33 H 0.066 0.934 34 H 0.040 0.960 35 H 0.042 0.958 36 H 0.081 0.919 37 H 0.032 0.968 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.046 0.954 41 H 0.076 0.924 42 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.696 4.095 13.290 14.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.100 3.900 3 H 0.011 0.989 4 C -0.568 4.568 5 H 0.075 0.925 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.779 3.221 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.194 1.194 12 N -0.262 5.262 13 C -0.070 4.070 14 C -0.160 4.160 15 C -0.164 4.164 16 C -0.037 4.037 17 H 0.097 0.903 18 C -0.167 4.167 19 C -0.060 4.060 20 N -0.294 5.294 21 C -0.121 4.121 22 C -0.121 4.121 23 H 0.036 0.964 24 H 0.055 0.945 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.041 0.959 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.111 0.889 33 H 0.084 0.916 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.099 0.901 37 H 0.050 0.950 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.065 0.935 41 H 0.095 0.905 42 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 2.875 3.743 12.917 13.752 hybrid contribution 1.216 0.420 -1.111 1.700 sum 4.091 4.163 11.806 13.170 Atomic orbital electron populations 1.21646 0.97903 0.98819 0.98106 1.19283 0.92245 0.91927 0.86505 0.98900 1.21642 1.31169 1.12361 0.91588 0.92528 1.25674 0.95471 0.95766 1.01725 1.70064 1.37757 1.24022 1.23775 0.85625 0.78808 0.78316 0.79301 1.20344 1.20961 1.19381 1.63745 1.19966 1.38175 1.04361 1.22763 0.88527 0.99225 0.96506 1.22727 0.99835 0.98261 0.95202 1.22803 0.94623 0.97602 1.01322 1.22434 0.97157 0.90892 0.93189 0.90250 1.22220 1.01851 0.95114 0.97479 1.22058 0.99541 0.88170 0.96186 1.61894 1.40605 1.03224 1.23709 1.22407 1.00389 0.98113 0.91148 1.22346 0.92542 0.99543 0.97662 0.96445 0.94503 0.93461 0.93162 0.92504 0.95860 0.90010 0.89957 0.92574 0.88862 0.91566 0.94175 0.94000 0.90106 0.94974 0.90739 0.90765 0.93499 0.90535 0.94922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.49 8.18 71.98 0.59 -4.90 16 2 C 0.21 10.72 1.62 44.17 0.07 10.79 16 3 H -0.01 -0.36 5.33 -2.39 -0.01 -0.37 16 4 C -0.53 -29.81 7.51 25.60 0.19 -29.61 16 5 H 0.06 3.17 6.22 -2.91 -0.02 3.15 16 6 C 0.01 0.71 5.30 84.66 0.45 1.16 16 7 N -0.92 -54.03 11.49 21.45 0.25 -53.78 16 8 Si 0.95 44.76 29.54 68.60 2.03 46.79 16 9 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 10 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 12 N -0.54 -23.52 5.02 -839.86 -4.22 -27.73 16 13 C 0.06 2.32 5.18 86.77 0.45 2.77 16 14 C -0.12 -3.57 7.08 31.98 0.23 -3.34 16 15 C -0.13 -3.56 5.46 31.77 0.17 -3.39 16 16 C 0.07 2.54 3.19 45.26 0.14 2.68 16 17 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 18 C -0.13 -4.69 3.10 30.60 0.09 -4.60 16 19 C 0.07 1.95 4.82 86.31 0.42 2.36 16 20 N -0.57 -16.26 5.02 -948.84 -4.76 -21.02 16 21 C 0.03 0.57 9.57 127.69 1.22 1.79 16 22 C 0.03 0.76 9.33 127.69 1.19 1.95 16 23 H 0.02 0.88 8.08 -2.38 -0.02 0.86 16 24 H 0.04 1.69 5.83 -2.39 -0.01 1.68 16 25 H 0.05 2.64 6.50 -2.39 -0.02 2.63 16 26 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 27 H 0.06 2.33 7.65 -2.38 -0.02 2.31 16 28 H 0.02 1.04 7.22 -2.39 -0.02 1.03 16 29 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 30 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.06 1.66 7.79 -2.39 -0.02 1.64 16 32 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 33 H 0.07 2.83 4.43 -2.39 -0.01 2.81 16 34 H 0.04 1.68 4.96 -2.39 -0.01 1.67 16 35 H 0.04 1.08 7.30 -2.39 -0.02 1.06 16 36 H 0.08 2.09 8.06 -2.39 -0.02 2.08 16 37 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.07 1.40 8.12 -2.38 -0.02 1.39 16 39 H 0.07 1.43 8.12 -2.39 -0.02 1.41 16 40 H 0.05 1.58 6.42 -2.39 -0.02 1.56 16 41 H 0.08 1.88 8.12 -2.39 -0.02 1.86 16 42 H 0.03 0.80 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -62.76 310.03 -0.52 -63.28 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.97 Total: 14.80 kcal Atomic # 6 Polarization: -27.55 SS G_CDS: 5.22 Total: -22.33 kcal Atomic # 7 Polarization: -93.80 SS G_CDS: -8.73 Total: -102.53 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -62.76 -0.52 -63.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701463505.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.813 kcal (2) G-P(sol) polarization free energy of solvation -62.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds