Wall clock time and date at job start Mon Mar 30 2020 03:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.09001 * 109.46795 * 2 1 4 4 C 1.50699 * 109.46663 * 119.99654 * 2 1 3 5 5 H 1.08001 * 119.99560 * 120.00218 * 4 2 1 6 6 C 1.37875 * 120.00563 * 299.99975 * 4 2 1 7 7 N 1.31514 * 119.99599 * 359.72982 * 6 4 2 8 8 Si 1.86801 * 120.00106 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47056 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46840 * 120.00498 * 8 6 4 11 11 H 1.48500 * 109.47138 * 240.00029 * 8 6 4 12 12 N 1.46892 * 109.47214 * 239.99912 * 2 1 3 13 13 C 1.47445 * 111.00024 * 306.13817 * 12 2 1 14 14 C 1.54323 * 107.23353 * 123.25913 * 13 12 2 15 15 C 1.55141 * 103.01698 * 22.28348 * 14 13 12 16 16 C 1.47845 * 111.00225 * 66.98268 * 12 2 1 17 17 H 1.09003 * 110.36848 * 332.46246 * 16 12 2 18 18 C 1.52999 * 110.37571 * 94.80551 * 16 12 2 19 19 C 1.53003 * 109.46939 * 295.00025 * 18 16 12 20 20 N 1.46903 * 109.46896 * 180.02562 * 19 18 16 21 21 C 1.46901 * 110.99657 * 170.00170 * 20 19 18 22 22 C 1.46893 * 110.99854 * 293.95106 * 20 19 18 23 23 H 1.08998 * 109.47013 * 307.21882 * 1 2 3 24 24 H 1.09001 * 109.46573 * 67.21876 * 1 2 3 25 25 H 1.09003 * 109.46660 * 187.21568 * 1 2 3 26 26 H 0.97003 * 119.99708 * 179.97438 * 7 6 4 27 27 H 1.09003 * 109.88690 * 242.66173 * 13 12 2 28 28 H 1.08996 * 109.89100 * 3.68806 * 13 12 2 29 29 H 1.09000 * 110.70250 * 140.66509 * 14 13 12 30 30 H 1.08990 * 110.70496 * 263.89929 * 14 13 12 31 31 H 1.09002 * 110.98865 * 82.44170 * 15 14 13 32 32 H 1.09002 * 110.98664 * 206.21915 * 15 14 13 33 33 H 1.08995 * 109.47106 * 55.00272 * 18 16 12 34 34 H 1.09000 * 109.47064 * 175.00692 * 18 16 12 35 35 H 1.09006 * 109.46957 * 300.00224 * 19 18 16 36 36 H 1.08995 * 109.47237 * 59.99953 * 19 18 16 37 37 H 1.09003 * 109.47184 * 59.99945 * 21 20 19 38 38 H 1.08996 * 109.46769 * 180.02562 * 21 20 19 39 39 H 1.09001 * 109.47315 * 299.99522 * 21 20 19 40 40 H 1.09009 * 109.47405 * 60.00293 * 22 20 19 41 41 H 1.09003 * 109.47340 * 179.97438 * 22 20 19 42 42 H 1.08998 * 109.47506 * 300.00375 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9476 0.8331 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.1483 -2.2856 3.6038 10 1 3.1471 -0.1856 4.8162 11 1 1.1677 -1.5865 4.8165 12 7 2.0198 -0.6925 -1.1993 13 6 1.4306 -2.0396 -1.3093 14 6 0.7221 -2.1184 -2.6780 15 6 1.4316 -1.0126 -3.5030 16 6 1.6876 0.0679 -2.4230 17 1 0.7907 0.6671 -2.2656 18 6 2.8614 0.9607 -2.8305 19 6 3.0899 2.0249 -1.7552 20 7 4.2165 2.8825 -2.1467 21 6 4.3176 4.0537 -1.2657 22 6 5.4747 2.1246 -2.1613 23 1 -0.3633 0.6216 0.8184 24 1 -0.3632 0.3979 -0.9475 25 1 -0.3633 -1.0196 0.1291 26 1 0.7129 1.1643 3.4844 27 1 2.2160 -2.7934 -1.2544 28 1 0.7101 -2.1959 -0.5065 29 1 0.8732 -3.0967 -3.1344 30 1 -0.3408 -1.9002 -2.5748 31 1 2.3701 -1.3781 -3.9199 32 1 0.7791 -0.6328 -4.2892 33 1 3.7600 0.3532 -2.9372 34 1 2.6360 1.4462 -3.7800 35 1 2.1912 2.6325 -1.6484 36 1 3.3152 1.5395 -0.8056 37 1 4.4704 3.7233 -0.2382 38 1 5.1593 4.6717 -1.5780 39 1 3.3977 4.6353 -1.3274 40 1 5.3963 1.3037 -2.8741 41 1 6.2923 2.7832 -2.4548 42 1 5.6694 1.7244 -1.1663 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701463506.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:35 Heat of formation + Delta-G solvation = -10.538644 kcal Electronic energy + Delta-G solvation = -18776.610833 eV Core-core repulsion = 16176.765680 eV Total energy + Delta-G solvation = -2599.845154 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.48160 -38.20050 -35.63158 -33.05523 -32.89946 -29.08901 -28.55650 -28.34629 -27.24664 -25.02327 -23.34199 -21.83927 -21.45450 -20.13826 -18.03840 -17.59166 -16.73120 -16.34408 -16.05939 -15.69416 -15.43395 -14.93424 -14.72544 -14.35213 -13.64418 -13.59783 -13.45513 -13.15272 -13.02326 -12.87520 -12.77667 -12.59336 -12.48921 -12.34500 -12.28534 -12.09420 -11.80979 -11.62358 -11.52442 -11.32981 -11.22264 -10.76973 -10.46871 -9.27190 -8.76479 -8.11504 -6.19940 1.36287 1.38821 1.50035 2.40839 3.07401 3.18171 3.47531 3.88341 3.95787 4.18417 4.27203 4.31408 4.43769 4.49986 4.55458 4.61899 4.71049 4.78566 4.79581 4.84373 4.91198 4.93989 4.96623 5.01503 5.06784 5.07925 5.11713 5.23209 5.26039 5.31983 5.42377 5.50331 5.60195 5.74324 5.87586 6.08348 6.15046 6.25548 6.56037 6.82174 6.95970 7.49111 8.94924 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.016317 B = 0.009672 C = 0.006960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.568604 B = 2894.130603 C = 4021.946518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.208 3.792 3 H 0.023 0.977 4 C -0.509 4.509 5 H 0.048 0.952 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.951 3.049 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.281 1.281 12 N -0.528 5.528 13 C 0.046 3.954 14 C -0.133 4.133 15 C -0.110 4.110 16 C 0.060 3.940 17 H 0.037 0.963 18 C -0.079 4.079 19 C 0.059 3.941 20 N -0.550 5.550 21 C 0.024 3.976 22 C 0.025 3.975 23 H 0.052 0.948 24 H 0.026 0.974 25 H 0.028 0.972 26 H 0.259 0.741 27 H 0.056 0.944 28 H 0.040 0.960 29 H 0.088 0.912 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.050 0.950 36 H 0.023 0.977 37 H 0.007 0.993 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.378 0.248 -11.575 12.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.101 3.899 3 H 0.041 0.959 4 C -0.548 4.548 5 H 0.067 0.933 6 C -0.186 4.186 7 N -0.560 5.560 8 Si 0.778 3.222 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.207 1.207 12 N -0.252 5.252 13 C -0.082 4.082 14 C -0.171 4.171 15 C -0.148 4.148 16 C -0.049 4.049 17 H 0.055 0.945 18 C -0.118 4.118 19 C -0.069 4.069 20 N -0.274 5.274 21 C -0.124 4.124 22 C -0.123 4.123 23 H 0.071 0.929 24 H 0.045 0.955 25 H 0.047 0.953 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.107 0.893 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.069 0.931 36 H 0.041 0.959 37 H 0.026 0.974 38 H 0.107 0.893 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.103 0.897 42 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges 3.776 0.494 -11.850 12.447 hybrid contribution -0.696 -0.438 2.341 2.481 sum 3.080 0.056 -9.509 9.996 Atomic orbital electron populations 1.22217 1.00870 0.99414 0.98731 1.19303 0.89471 0.93875 0.87297 0.95882 1.21399 1.30108 1.12045 0.91226 0.93332 1.25622 0.95594 0.95852 1.01579 1.70035 1.38322 1.23981 1.23672 0.85605 0.78106 0.78702 0.79823 1.19454 1.20883 1.20661 1.63654 1.57273 1.02200 1.02056 1.22654 0.96912 0.91802 0.96880 1.22754 0.98995 1.00287 0.95107 1.22666 1.01127 0.94470 0.96551 1.22672 0.96190 0.95388 0.90663 0.94538 1.21366 0.97890 0.95043 0.97467 1.22171 0.93002 0.94196 0.97530 1.62161 1.04494 1.08992 1.51728 1.22404 1.03156 0.93195 0.93678 1.22430 0.91375 0.98742 0.99755 0.92900 0.95486 0.95263 0.93191 0.92533 0.94150 0.89313 0.92234 0.90060 0.89485 0.91634 0.90147 0.93111 0.95888 0.97391 0.89316 0.91518 0.90622 0.89745 0.97338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.51 8.22 71.99 0.59 -6.91 16 2 C 0.21 10.47 1.85 44.17 0.08 10.56 16 3 H 0.02 1.29 5.23 -2.39 -0.01 1.28 16 4 C -0.51 -28.41 7.94 25.60 0.20 -28.21 16 5 H 0.05 2.76 7.67 -2.91 -0.02 2.74 16 6 C 0.01 0.66 5.30 84.65 0.45 1.11 16 7 N -0.92 -53.45 11.42 21.45 0.24 -53.20 16 8 Si 0.95 44.68 29.54 68.60 2.03 46.71 16 9 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 10 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 12 N -0.53 -22.26 4.61 -839.98 -3.87 -26.13 16 13 C 0.05 1.75 5.73 86.65 0.50 2.25 16 14 C -0.13 -3.85 6.94 31.78 0.22 -3.63 16 15 C -0.11 -2.97 6.49 31.98 0.21 -2.77 16 16 C 0.06 2.07 2.35 45.38 0.11 2.18 16 17 H 0.04 1.38 5.95 -2.39 -0.01 1.37 16 18 C -0.08 -2.53 4.87 30.59 0.15 -2.38 16 19 C 0.06 2.15 3.82 86.30 0.33 2.48 16 20 N -0.55 -17.19 5.02 -948.83 -4.76 -21.95 16 21 C 0.02 0.69 9.57 127.69 1.22 1.91 16 22 C 0.03 0.70 9.32 127.69 1.19 1.89 16 23 H 0.05 2.88 6.31 -2.39 -0.02 2.87 16 24 H 0.03 1.18 6.19 -2.39 -0.01 1.16 16 25 H 0.03 1.40 6.26 -2.39 -0.01 1.39 16 26 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 27 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.04 1.75 5.32 -2.39 -0.01 1.74 16 29 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.08 2.03 8.06 -2.39 -0.02 2.01 16 32 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.07 2.08 6.55 -2.39 -0.02 2.06 16 34 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.05 1.95 8.06 -2.38 -0.02 1.93 16 36 H 0.02 1.04 5.91 -2.39 -0.01 1.03 16 37 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 38 H 0.09 2.04 8.12 -2.39 -0.02 2.02 16 39 H 0.07 1.86 8.12 -2.39 -0.02 1.84 16 40 H 0.08 1.99 6.47 -2.38 -0.02 1.98 16 41 H 0.08 1.89 8.12 -2.39 -0.02 1.88 16 42 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 Total: -1.00 -60.85 311.96 -0.15 -61.00 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: 0.97 Total: 15.11 kcal Atomic # 6 Polarization: -26.78 SS G_CDS: 5.25 Total: -21.54 kcal Atomic # 7 Polarization: -92.90 SS G_CDS: -8.39 Total: -101.29 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -60.85 -0.15 -61.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701463506.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.465 kcal (2) G-P(sol) polarization free energy of solvation -60.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds