Wall clock time and date at job start Mon Mar 30 2020 03:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 109.47598 * 2 1 4 4 C 1.50704 * 109.47127 * 120.00287 * 2 1 3 5 5 H 1.08000 * 120.00092 * 120.00295 * 4 2 1 6 6 C 1.37875 * 119.99598 * 299.99851 * 4 2 1 7 7 N 1.31510 * 120.00299 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99852 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47049 * 60.00072 * 8 6 4 10 10 H 1.48505 * 109.47037 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46943 * 300.00048 * 8 6 4 12 12 N 1.46907 * 109.47314 * 239.99803 * 2 1 3 13 13 C 1.47438 * 111.00227 * 292.10505 * 12 2 1 14 14 C 1.54318 * 107.37304 * 236.65956 * 13 12 2 15 15 C 1.55406 * 102.89608 * 337.89614 * 14 13 12 16 16 C 1.47849 * 111.00014 * 171.25698 * 12 2 1 17 17 H 1.08996 * 110.37075 * 27.53827 * 16 12 2 18 18 C 1.53003 * 110.37550 * 265.30837 * 16 12 2 19 19 C 1.52999 * 109.47004 * 65.41839 * 18 16 12 20 20 N 1.46904 * 109.46807 * 174.03717 * 19 18 16 21 21 C 1.46897 * 111.00087 * 66.04725 * 20 19 18 22 22 C 1.46899 * 110.99750 * 189.99936 * 20 19 18 23 23 H 1.08996 * 109.47286 * 185.44888 * 1 2 3 24 24 H 1.08996 * 109.47067 * 305.45234 * 1 2 3 25 25 H 1.09008 * 109.46757 * 65.45036 * 1 2 3 26 26 H 0.96999 * 120.00436 * 180.02562 * 7 6 4 27 27 H 1.09007 * 109.88617 * 356.14617 * 13 12 2 28 28 H 1.08999 * 109.89102 * 117.16912 * 13 12 2 29 29 H 1.09000 * 110.70467 * 96.17656 * 14 13 12 30 30 H 1.08999 * 110.70762 * 219.41805 * 14 13 12 31 31 H 1.08997 * 110.86781 * 277.39076 * 15 14 13 32 32 H 1.08992 * 111.05638 * 153.64955 * 15 14 13 33 33 H 1.08991 * 109.46756 * 185.41921 * 18 16 12 34 34 H 1.08993 * 109.46715 * 305.41791 * 18 16 12 35 35 H 1.08996 * 109.47208 * 294.03755 * 19 18 16 36 36 H 1.09002 * 109.47076 * 54.03871 * 19 18 16 37 37 H 1.09006 * 109.47174 * 59.99414 * 21 20 19 38 38 H 1.08993 * 109.47118 * 180.02562 * 21 20 19 39 39 H 1.09004 * 109.46922 * 300.00421 * 21 20 19 40 40 H 1.09003 * 109.47216 * 60.00540 * 22 20 19 41 41 H 1.09000 * 109.47033 * 179.97438 * 22 20 19 42 42 H 1.08995 * 109.47350 * 300.00183 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8295 2.6034 8 14 2.3212 -1.1205 4.0079 9 1 3.8062 -1.1211 4.0082 10 1 1.8258 -0.4207 5.2205 11 1 1.8256 -2.5203 4.0077 12 7 2.0197 -0.6926 -1.1994 13 6 1.7075 -2.1324 -1.1428 14 6 3.0395 -2.8986 -1.2843 15 6 3.9644 -1.8609 -1.9792 16 6 3.4825 -0.5332 -1.3431 17 1 3.9462 -0.3898 -0.3672 18 6 3.8021 0.6474 -2.2623 19 6 3.3361 1.9473 -1.6035 20 7 3.7691 3.0912 -2.4172 21 6 3.0908 3.0971 -3.7202 22 6 3.5508 4.3569 -1.7044 23 1 -0.3633 -1.0230 0.0976 24 1 -0.3633 0.5961 0.8371 25 1 -0.3633 0.4270 -0.9348 26 1 0.7087 1.1612 3.4843 27 1 1.2408 -2.3733 -0.1875 28 1 1.0376 -2.3991 -1.9602 29 1 3.4336 -3.1705 -0.3051 30 1 2.9110 -3.7829 -1.9084 31 1 3.8038 -1.8582 -3.0573 32 1 5.0116 -2.0496 -1.7429 33 1 4.8773 0.6927 -2.4350 34 1 3.2864 0.5170 -3.2136 35 1 2.2488 1.9465 -1.5272 36 1 3.7703 2.0254 -0.6067 37 1 2.0134 3.1637 -3.5687 38 1 3.4300 3.9538 -4.3025 39 1 3.3260 2.1777 -4.2564 40 1 4.1206 4.3536 -0.7751 41 1 3.8803 5.1872 -2.3290 42 1 2.4902 4.4693 -1.4798 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701463507.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:37 Heat of formation + Delta-G solvation = 1.468609 kcal Electronic energy + Delta-G solvation = -18811.087358 eV Core-core repulsion = 16211.762878 eV Total energy + Delta-G solvation = -2599.324480 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.76089 -36.87045 -33.70572 -31.55865 -31.09939 -27.39343 -27.30492 -26.90632 -25.11591 -23.59226 -21.67810 -20.15769 -19.69490 -18.83700 -16.43715 -15.74453 -15.00720 -14.89890 -14.49768 -14.30308 -13.89046 -13.34129 -12.80813 -12.48880 -12.35914 -12.17969 -11.93296 -11.57302 -11.54271 -11.33172 -11.07199 -10.99296 -10.91246 -10.73026 -10.36044 -10.27946 -10.05984 -10.05390 -9.88603 -9.81876 -9.59440 -9.03497 -8.38960 -7.94246 -7.11775 -5.98622 -4.09323 3.27452 3.32860 3.35350 4.34465 4.40030 5.07378 5.27360 5.32278 5.37648 5.45425 5.57628 5.70024 5.74340 5.78994 5.91121 6.03465 6.08140 6.13430 6.14268 6.19312 6.29521 6.38133 6.43578 6.50553 6.66438 6.69246 6.80697 6.95163 6.97196 7.04816 7.09796 7.26535 7.40253 7.43881 7.60987 7.73018 8.01732 8.20390 8.36427 8.47666 9.01319 9.57203 11.02139 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.018843 B = 0.009011 C = 0.007221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.605558 B = 3106.687916 C = 3876.899796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.196 3.804 3 H 0.046 0.954 4 C -0.539 4.539 5 H 0.057 0.943 6 C 0.068 3.932 7 N -0.887 5.887 8 Si 0.885 3.115 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.278 1.278 12 N -0.526 5.526 13 C 0.049 3.951 14 C -0.138 4.138 15 C -0.122 4.122 16 C 0.075 3.925 17 H 0.065 0.935 18 C -0.090 4.090 19 C 0.056 3.944 20 N -0.552 5.552 21 C 0.025 3.975 22 C 0.026 3.974 23 H 0.025 0.975 24 H 0.078 0.922 25 H 0.011 0.989 26 H 0.261 0.739 27 H 0.071 0.929 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.024 0.976 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.116 0.639 -8.852 9.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.090 3.910 3 H 0.063 0.937 4 C -0.578 4.578 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.713 3.287 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.204 1.204 12 N -0.250 5.250 13 C -0.079 4.079 14 C -0.176 4.176 15 C -0.160 4.160 16 C -0.034 4.034 17 H 0.083 0.917 18 C -0.129 4.129 19 C -0.071 4.071 20 N -0.276 5.276 21 C -0.124 4.124 22 C -0.123 4.123 23 H 0.044 0.956 24 H 0.097 0.903 25 H 0.030 0.970 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.042 0.958 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 4.260 0.961 -9.209 10.192 hybrid contribution -0.224 -0.762 1.916 2.074 sum 4.036 0.199 -7.293 8.337 Atomic orbital electron populations 1.21747 0.98063 0.99639 0.99046 1.19556 0.92156 0.94742 0.84575 0.93659 1.21743 1.31636 1.12817 0.91627 0.92524 1.24909 0.94911 0.94856 0.98785 1.69877 1.36461 1.22764 1.23439 0.86778 0.79218 0.79911 0.82823 1.20383 1.21301 1.20396 1.63824 1.10832 1.09398 1.40936 1.22622 0.95549 0.88740 1.01021 1.22790 0.97214 0.97682 0.99953 1.22715 0.98306 0.95458 0.99523 1.22424 0.90177 0.92981 0.97842 0.91676 1.21443 0.99755 0.93141 0.98515 1.22304 0.99443 0.89111 0.96261 1.62094 1.57999 1.03214 1.04320 1.22363 0.96313 1.01995 0.91681 1.22327 0.99547 0.91531 0.98877 0.95590 0.90312 0.96970 0.92952 0.91076 0.93250 0.91921 0.92453 0.91808 0.92200 0.92224 0.92320 0.93009 0.90957 0.95755 0.92355 0.91302 0.91518 0.92138 0.95648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 8.81 37.15 0.33 -2.76 16 2 C 0.20 4.76 1.86 -68.86 -0.13 4.64 16 3 H 0.05 1.19 5.27 -51.93 -0.27 0.91 16 4 C -0.54 -14.13 6.20 -34.44 -0.21 -14.34 16 5 H 0.06 1.49 6.27 -52.49 -0.33 1.16 16 6 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 7 N -0.89 -24.76 11.38 55.43 0.63 -24.12 16 8 Si 0.88 21.05 29.54 -169.99 -5.02 16.03 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 N -0.53 -11.03 4.64 -216.85 -1.01 -12.04 16 13 C 0.05 0.97 5.45 -2.84 -0.02 0.95 16 14 C -0.14 -2.35 6.75 -24.76 -0.17 -2.52 16 15 C -0.12 -1.98 6.50 -24.45 -0.16 -2.14 16 16 C 0.08 1.43 2.33 -66.18 -0.15 1.27 16 17 H 0.07 1.42 6.97 -51.93 -0.36 1.06 16 18 C -0.09 -1.53 4.72 -26.73 -0.13 -1.66 16 19 C 0.06 1.01 3.58 -3.82 -0.01 1.00 16 20 N -0.55 -8.74 5.02 -251.26 -1.26 -10.00 16 21 C 0.02 0.34 9.32 60.06 0.56 0.90 16 22 C 0.03 0.37 9.57 60.06 0.57 0.94 16 23 H 0.02 0.61 7.15 -51.93 -0.37 0.24 16 24 H 0.08 2.08 6.23 -51.93 -0.32 1.76 16 25 H 0.01 0.26 8.14 -51.92 -0.42 -0.16 16 26 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.07 1.58 5.64 -51.93 -0.29 1.29 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.06 1.12 7.76 -51.93 -0.40 0.72 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.97 8.06 -51.93 -0.42 0.55 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.98 6.85 -51.93 -0.36 0.62 16 35 H 0.05 1.06 6.45 -51.93 -0.34 0.73 16 36 H 0.07 1.44 7.94 -51.93 -0.41 1.02 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 39 H 0.07 0.92 6.60 -51.93 -0.34 0.58 16 40 H 0.07 0.96 8.12 -51.93 -0.42 0.53 16 41 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 313.13 15.07 4.72 4.72 Total: -1.00 -27.03 313.13 -9.13 -36.15 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -7.58 Total: 1.25 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: 0.39 Total: -11.99 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: -1.64 Total: -46.16 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.03 -9.13 -36.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701463507.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.621 kcal (2) G-P(sol) polarization free energy of solvation -27.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds