Wall clock time and date at job start Mon Mar 30 2020 03:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 109.47598 * 2 1 4 4 C 1.50704 * 109.47127 * 120.00287 * 2 1 3 5 5 H 1.08000 * 120.00092 * 120.00295 * 4 2 1 6 6 C 1.37875 * 119.99598 * 299.99851 * 4 2 1 7 7 N 1.31510 * 120.00299 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99852 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47049 * 60.00072 * 8 6 4 10 10 H 1.48505 * 109.47037 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46943 * 300.00048 * 8 6 4 12 12 N 1.46907 * 109.47314 * 239.99803 * 2 1 3 13 13 C 1.47438 * 111.00227 * 292.10505 * 12 2 1 14 14 C 1.54318 * 107.37304 * 236.65956 * 13 12 2 15 15 C 1.55406 * 102.89608 * 337.89614 * 14 13 12 16 16 C 1.47849 * 111.00014 * 171.25698 * 12 2 1 17 17 H 1.08996 * 110.37075 * 27.53827 * 16 12 2 18 18 C 1.53003 * 110.37550 * 265.30837 * 16 12 2 19 19 C 1.52999 * 109.47004 * 65.41839 * 18 16 12 20 20 N 1.46904 * 109.46807 * 174.03717 * 19 18 16 21 21 C 1.46897 * 111.00087 * 66.04725 * 20 19 18 22 22 C 1.46899 * 110.99750 * 189.99936 * 20 19 18 23 23 H 1.08996 * 109.47286 * 185.44888 * 1 2 3 24 24 H 1.08996 * 109.47067 * 305.45234 * 1 2 3 25 25 H 1.09008 * 109.46757 * 65.45036 * 1 2 3 26 26 H 0.96999 * 120.00436 * 180.02562 * 7 6 4 27 27 H 1.09007 * 109.88617 * 356.14617 * 13 12 2 28 28 H 1.08999 * 109.89102 * 117.16912 * 13 12 2 29 29 H 1.09000 * 110.70467 * 96.17656 * 14 13 12 30 30 H 1.08999 * 110.70762 * 219.41805 * 14 13 12 31 31 H 1.08997 * 110.86781 * 277.39076 * 15 14 13 32 32 H 1.08992 * 111.05638 * 153.64955 * 15 14 13 33 33 H 1.08991 * 109.46756 * 185.41921 * 18 16 12 34 34 H 1.08993 * 109.46715 * 305.41791 * 18 16 12 35 35 H 1.08996 * 109.47208 * 294.03755 * 19 18 16 36 36 H 1.09002 * 109.47076 * 54.03871 * 19 18 16 37 37 H 1.09006 * 109.47174 * 59.99414 * 21 20 19 38 38 H 1.08993 * 109.47118 * 180.02562 * 21 20 19 39 39 H 1.09004 * 109.46922 * 300.00421 * 21 20 19 40 40 H 1.09003 * 109.47216 * 60.00540 * 22 20 19 41 41 H 1.09000 * 109.47033 * 179.97438 * 22 20 19 42 42 H 1.08995 * 109.47350 * 300.00183 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8295 2.6034 8 14 2.3212 -1.1205 4.0079 9 1 3.8062 -1.1211 4.0082 10 1 1.8258 -0.4207 5.2205 11 1 1.8256 -2.5203 4.0077 12 7 2.0197 -0.6926 -1.1994 13 6 1.7075 -2.1324 -1.1428 14 6 3.0395 -2.8986 -1.2843 15 6 3.9644 -1.8609 -1.9792 16 6 3.4825 -0.5332 -1.3431 17 1 3.9462 -0.3898 -0.3672 18 6 3.8021 0.6474 -2.2623 19 6 3.3361 1.9473 -1.6035 20 7 3.7691 3.0912 -2.4172 21 6 3.0908 3.0971 -3.7202 22 6 3.5508 4.3569 -1.7044 23 1 -0.3633 -1.0230 0.0976 24 1 -0.3633 0.5961 0.8371 25 1 -0.3633 0.4270 -0.9348 26 1 0.7087 1.1612 3.4843 27 1 1.2408 -2.3733 -0.1875 28 1 1.0376 -2.3991 -1.9602 29 1 3.4336 -3.1705 -0.3051 30 1 2.9110 -3.7829 -1.9084 31 1 3.8038 -1.8582 -3.0573 32 1 5.0116 -2.0496 -1.7429 33 1 4.8773 0.6927 -2.4350 34 1 3.2864 0.5170 -3.2136 35 1 2.2488 1.9465 -1.5272 36 1 3.7703 2.0254 -0.6067 37 1 2.0134 3.1637 -3.5687 38 1 3.4300 3.9538 -4.3025 39 1 3.3260 2.1777 -4.2564 40 1 4.1206 4.3536 -0.7751 41 1 3.8803 5.1872 -2.3290 42 1 2.4902 4.4693 -1.4798 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701463507.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:37 Heat of formation + Delta-G solvation = -15.902555 kcal Electronic energy + Delta-G solvation = -18811.840628 eV Core-core repulsion = 16211.762878 eV Total energy + Delta-G solvation = -2600.077750 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.33729 -38.19378 -35.59693 -33.07535 -32.87232 -29.12675 -28.52245 -28.29077 -27.20065 -24.98564 -23.24659 -21.55796 -21.30545 -20.51730 -18.34627 -17.42308 -16.65649 -16.26521 -16.02357 -15.67985 -15.38095 -14.77089 -14.68098 -14.07394 -14.01058 -13.61219 -13.27806 -13.15072 -12.89427 -12.85614 -12.75774 -12.62805 -12.52600 -12.46724 -12.10206 -11.87570 -11.78952 -11.70783 -11.42280 -11.34662 -11.19620 -10.97838 -10.45065 -9.26942 -8.89356 -8.03131 -6.21879 1.36451 1.37334 1.44047 2.39794 3.08114 3.17281 3.50896 3.92477 3.98933 4.22149 4.31547 4.33281 4.43735 4.54842 4.61657 4.70256 4.76439 4.79078 4.86144 4.87455 4.96100 4.98044 5.05398 5.08666 5.09895 5.14896 5.17325 5.21793 5.31124 5.36139 5.46666 5.56327 5.62584 5.73675 6.00649 6.10262 6.17966 6.24364 6.46211 6.68218 7.00437 7.47466 8.93590 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.018843 B = 0.009011 C = 0.007221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.605558 B = 3106.687916 C = 3876.899796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.204 3.796 3 H 0.022 0.978 4 C -0.541 4.541 5 H 0.052 0.948 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.941 3.059 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.526 5.526 13 C 0.045 3.955 14 C -0.132 4.132 15 C -0.111 4.111 16 C 0.070 3.930 17 H 0.030 0.970 18 C -0.078 4.078 19 C 0.068 3.932 20 N -0.555 5.555 21 C 0.025 3.975 22 C 0.025 3.975 23 H 0.023 0.977 24 H 0.053 0.947 25 H 0.023 0.977 26 H 0.259 0.741 27 H 0.041 0.959 28 H 0.064 0.936 29 H 0.048 0.952 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.021 0.979 36 H 0.043 0.957 37 H 0.014 0.986 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.089 0.911 42 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.356 -0.189 -10.531 11.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.096 3.904 3 H 0.039 0.961 4 C -0.580 4.580 5 H 0.071 0.929 6 C -0.180 4.180 7 N -0.554 5.554 8 Si 0.768 3.232 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.250 5.250 13 C -0.083 4.083 14 C -0.171 4.171 15 C -0.149 4.149 16 C -0.039 4.039 17 H 0.048 0.952 18 C -0.117 4.117 19 C -0.060 4.060 20 N -0.279 5.279 21 C -0.123 4.123 22 C -0.124 4.124 23 H 0.042 0.958 24 H 0.072 0.928 25 H 0.042 0.958 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.039 0.961 36 H 0.062 0.938 37 H 0.033 0.967 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.108 0.892 42 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 5.507 0.126 -10.901 12.214 hybrid contribution -0.620 -0.471 2.395 2.519 sum 4.887 -0.346 -8.506 9.816 Atomic orbital electron populations 1.21579 0.98314 0.98930 0.98515 1.19312 0.91876 0.93742 0.85455 0.96059 1.21972 1.31015 1.12454 0.92550 0.92939 1.25598 0.95359 0.95613 1.01457 1.70003 1.37607 1.23972 1.23784 0.85870 0.78691 0.78925 0.79716 1.20053 1.21113 1.19954 1.63811 1.12297 1.10125 1.38731 1.22664 0.97359 0.88335 0.99966 1.22751 0.95468 0.98730 1.00100 1.22699 0.99039 0.92834 1.00344 1.22496 0.88689 0.95671 0.97020 0.95152 1.21351 1.00732 0.91483 0.98092 1.22049 0.97192 0.91091 0.95641 1.62137 1.58019 1.02854 1.04856 1.22443 0.95617 1.03569 0.90678 1.22391 0.98808 0.91887 0.99287 0.95820 0.92790 0.95827 0.93139 0.94091 0.91730 0.93288 0.89295 0.89675 0.90370 0.90590 0.91233 0.96076 0.93803 0.96732 0.89807 0.90615 0.92162 0.89242 0.96829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.75 8.81 71.98 0.63 -5.12 16 2 C 0.20 10.17 1.86 44.17 0.08 10.25 16 3 H 0.02 1.18 5.27 -2.39 -0.01 1.17 16 4 C -0.54 -29.01 6.20 25.60 0.16 -28.85 16 5 H 0.05 2.81 6.27 -2.91 -0.02 2.79 16 6 C 0.02 1.05 5.30 84.65 0.45 1.50 16 7 N -0.91 -52.54 11.38 21.45 0.24 -52.29 16 8 Si 0.94 43.79 29.54 68.60 2.03 45.82 16 9 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 10 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 12 N -0.53 -21.98 4.64 -839.98 -3.90 -25.88 16 13 C 0.05 1.73 5.45 86.65 0.47 2.21 16 14 C -0.13 -4.19 6.75 31.87 0.21 -3.98 16 15 C -0.11 -3.29 6.50 32.07 0.21 -3.08 16 16 C 0.07 2.62 2.33 45.38 0.11 2.73 16 17 H 0.03 1.34 6.97 -2.39 -0.02 1.33 16 18 C -0.08 -2.56 4.72 30.59 0.14 -2.42 16 19 C 0.07 2.50 3.58 86.30 0.31 2.81 16 20 N -0.55 -17.02 5.02 -948.85 -4.76 -21.78 16 21 C 0.02 0.64 9.32 127.69 1.19 1.83 16 22 C 0.02 0.69 9.57 127.69 1.22 1.91 16 23 H 0.02 1.14 7.15 -2.39 -0.02 1.12 16 24 H 0.05 2.95 6.23 -2.39 -0.01 2.94 16 25 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 26 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 27 H 0.04 1.82 5.64 -2.38 -0.01 1.81 16 28 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.05 1.68 7.76 -2.39 -0.02 1.66 16 30 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.08 2.21 8.06 -2.39 -0.02 2.19 16 32 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.07 2.15 6.85 -2.39 -0.02 2.13 16 35 H 0.02 0.90 6.45 -2.39 -0.02 0.88 16 36 H 0.04 1.82 7.94 -2.39 -0.02 1.80 16 37 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 38 H 0.08 1.72 8.12 -2.39 -0.02 1.70 16 39 H 0.08 1.83 6.60 -2.38 -0.02 1.81 16 40 H 0.06 1.74 8.12 -2.39 -0.02 1.72 16 41 H 0.09 1.98 8.12 -2.39 -0.02 1.96 16 42 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 Total: -1.00 -58.96 313.13 -0.24 -59.20 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 0.96 Total: 15.15 kcal Atomic # 6 Polarization: -25.41 SS G_CDS: 5.19 Total: -20.22 kcal Atomic # 7 Polarization: -91.53 SS G_CDS: -8.42 Total: -99.95 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -58.96 -0.24 -59.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701463507.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.295 kcal (2) G-P(sol) polarization free energy of solvation -58.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds