Wall clock time and date at job start Mon Mar 30 2020 03:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47419 * 2 1 4 4 C 1.50694 * 109.46967 * 239.99688 * 2 1 3 5 5 H 1.08004 * 120.00154 * 239.99932 * 4 2 1 6 6 C 1.37874 * 120.00099 * 60.00337 * 4 2 1 7 7 N 1.31510 * 120.00340 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00076 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47093 * 59.99815 * 8 6 4 10 10 H 1.48507 * 109.47273 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.46926 * 299.99819 * 8 6 4 12 12 N 1.46904 * 109.46815 * 119.99741 * 2 1 3 13 13 C 1.47843 * 110.99640 * 179.15414 * 12 2 1 14 14 C 1.54916 * 104.79337 * 146.36598 * 13 12 2 15 15 C 1.55398 * 101.74107 * 323.02060 * 14 13 12 16 16 H 1.09005 * 110.67856 * 277.17709 * 15 14 13 17 17 C 1.52992 * 110.84620 * 153.86232 * 15 14 13 18 18 C 1.53001 * 109.47290 * 71.46252 * 17 15 14 19 19 N 1.46900 * 109.47483 * 179.97438 * 18 17 15 20 20 C 1.46897 * 111.00343 * 170.00212 * 19 18 17 21 21 C 1.46900 * 110.99915 * 293.95931 * 19 18 17 22 22 C 1.47439 * 111.00045 * 300.00122 * 12 2 1 23 23 H 1.08997 * 109.47419 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47308 * 300.00508 * 1 2 3 25 25 H 1.08998 * 109.47024 * 60.00107 * 1 2 3 26 26 H 0.96999 * 120.00883 * 179.97438 * 7 6 4 27 27 H 1.08996 * 110.37823 * 265.19398 * 13 12 2 28 28 H 1.09001 * 110.37314 * 27.42672 * 13 12 2 29 29 H 1.08995 * 110.98807 * 81.01940 * 14 13 12 30 30 H 1.08997 * 110.99076 * 204.80412 * 14 13 12 31 31 H 1.09000 * 109.47442 * 191.46215 * 17 15 14 32 32 H 1.09003 * 109.47234 * 311.46145 * 17 15 14 33 33 H 1.08998 * 109.47349 * 300.00195 * 18 17 15 34 34 H 1.08997 * 109.46889 * 60.00227 * 18 17 15 35 35 H 1.08997 * 109.47168 * 60.00113 * 20 19 18 36 36 H 1.08997 * 109.47504 * 180.02562 * 20 19 18 37 37 H 1.09006 * 109.46897 * 300.00371 * 20 19 18 38 38 H 1.09003 * 109.47733 * 59.99796 * 21 19 18 39 39 H 1.09004 * 109.47024 * 179.97438 * 21 19 18 40 40 H 1.08999 * 109.47193 * 299.99475 * 21 19 18 41 41 H 1.09002 * 109.88998 * 356.14887 * 22 12 2 42 42 H 1.09003 * 109.88733 * 117.17548 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8295 -2.6035 8 14 2.3225 -1.1197 -4.0079 9 1 1.8280 -2.5200 -4.0080 10 1 1.8279 -0.4194 -5.2205 11 1 3.8075 -1.1191 -4.0076 12 7 2.0196 -0.6925 1.1995 13 6 3.4974 -0.7299 1.2235 14 6 3.8711 -0.6369 2.7241 15 6 2.7924 0.3458 3.2583 16 1 3.0871 1.3788 3.0730 17 6 2.5351 0.1141 4.7486 18 6 3.7382 0.6050 5.5562 19 7 3.4910 0.3831 6.9872 20 6 4.7083 0.6194 7.7747 21 6 2.3833 1.2207 7.4661 22 6 1.5468 -0.0239 2.4256 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.7088 1.1612 -3.4844 27 1 3.8603 -1.6660 0.7994 28 1 3.9074 0.1184 0.6754 29 1 3.7847 -1.6093 3.2088 30 1 4.8726 -0.2266 2.8523 31 1 1.6444 0.6636 5.0533 32 1 2.3853 -0.9502 4.9303 33 1 4.6290 0.0556 5.2516 34 1 3.8880 1.6692 5.3746 35 1 5.0389 1.6483 7.6326 36 1 4.4973 0.4477 8.8302 37 1 5.4921 -0.0628 7.4455 38 1 1.4767 0.9757 6.9126 39 1 2.2212 1.0364 8.5281 40 1 2.6296 2.2714 7.3128 41 1 0.9931 0.8784 2.1660 42 1 0.9081 -0.7000 2.9939 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701503554.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:56 Heat of formation + Delta-G solvation = -0.198205 kcal Electronic energy + Delta-G solvation = -17818.719285 eV Core-core repulsion = 15219.322526 eV Total energy + Delta-G solvation = -2599.396758 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.78295 -37.41859 -34.20887 -32.15611 -30.18802 -28.05133 -27.76968 -27.03689 -25.11743 -23.71971 -21.25681 -21.15990 -19.88266 -18.97712 -16.43604 -15.67948 -15.62015 -15.20838 -14.97901 -14.26612 -14.06865 -13.66101 -13.02777 -12.64727 -12.59661 -12.54477 -12.39802 -11.89844 -11.79727 -11.56431 -11.40470 -11.16741 -10.97743 -10.79721 -10.64720 -10.40008 -10.27772 -10.08700 -9.99197 -9.85065 -9.67782 -8.86944 -8.50763 -8.38357 -7.07689 -5.97046 -4.01337 3.34702 3.38628 3.42010 3.82162 4.44617 4.82057 4.97577 5.03180 5.10659 5.17951 5.24661 5.27414 5.34531 5.43484 5.46373 5.62402 5.65897 5.71335 5.75065 5.91482 6.00601 6.05062 6.19970 6.26714 6.34785 6.50029 6.66127 6.75710 6.84870 6.88314 6.88624 6.91003 7.12486 7.15526 7.56489 7.75761 7.88597 8.24716 8.39718 8.65446 9.05719 9.63756 11.09804 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.052994 B = 0.004436 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.234030 B = 6310.815628 C = 6643.087381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.207 3.793 3 H -0.003 1.003 4 C -0.501 4.501 5 H 0.061 0.939 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.526 5.526 13 C 0.060 3.940 14 C -0.126 4.126 15 C -0.110 4.110 16 H 0.067 0.933 17 C -0.101 4.101 18 C 0.055 3.945 19 N -0.549 5.549 20 C 0.024 3.976 21 C 0.021 3.979 22 C 0.049 3.951 23 H 0.033 0.967 24 H 0.007 0.993 25 H 0.084 0.916 26 H 0.260 0.740 27 H 0.068 0.932 28 H 0.042 0.958 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.031 0.969 35 H 0.023 0.977 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.023 0.977 41 H 0.048 0.952 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.944 1.103 16.630 17.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.101 3.899 3 H 0.015 0.985 4 C -0.540 4.540 5 H 0.079 0.921 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.251 5.251 13 C -0.068 4.068 14 C -0.164 4.164 15 C -0.130 4.130 16 H 0.085 0.915 17 C -0.139 4.139 18 C -0.073 4.073 19 N -0.273 5.273 20 C -0.124 4.124 21 C -0.127 4.127 22 C -0.079 4.079 23 H 0.052 0.948 24 H 0.026 0.974 25 H 0.103 0.897 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.049 0.951 35 H 0.041 0.959 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.042 0.958 41 H 0.066 0.934 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.518 0.229 16.505 17.114 hybrid contribution 0.817 1.350 -0.996 1.866 sum 5.335 1.579 15.510 16.477 Atomic orbital electron populations 1.21843 0.97805 0.99609 0.99812 1.19417 0.92343 0.91783 0.86349 0.98536 1.21109 1.30850 1.12209 0.89829 0.92118 1.24933 0.95264 0.95096 0.98998 1.69881 1.37052 1.23120 1.23427 0.86589 0.79059 0.79795 0.82120 1.20218 1.21406 1.20379 1.63687 1.07302 1.51873 1.02200 1.22748 0.89532 1.00957 0.93550 1.22873 0.97346 0.98995 0.97165 1.22443 0.97175 0.99174 0.94160 0.91462 1.21543 0.96926 1.02128 0.93284 1.22214 0.99558 0.98854 0.86627 1.62001 1.06438 1.55242 1.03635 1.22370 0.92411 0.99338 0.98283 1.22439 0.95049 0.94465 1.00784 1.22803 0.95690 0.97398 0.92051 0.94759 0.97396 0.89745 0.93000 0.91348 0.93932 0.91247 0.92160 0.92174 0.90877 0.90652 0.95086 0.95874 0.91569 0.91378 0.90833 0.91691 0.95811 0.93382 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.34 8.84 37.16 0.33 -3.01 16 2 C 0.21 5.38 1.64 -68.87 -0.11 5.27 16 3 H 0.00 -0.08 8.10 -51.93 -0.42 -0.50 16 4 C -0.50 -14.04 8.07 -34.44 -0.28 -14.32 16 5 H 0.06 1.70 7.22 -52.48 -0.38 1.32 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -25.92 11.32 55.43 0.63 -25.29 16 8 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 N -0.53 -11.67 5.02 -224.68 -1.13 -12.80 16 13 C 0.06 1.20 5.69 -2.29 -0.01 1.19 16 14 C -0.13 -1.95 5.95 -24.45 -0.15 -2.09 16 15 C -0.11 -1.67 2.93 -88.66 -0.26 -1.93 16 16 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 17 C -0.10 -1.28 4.50 -26.73 -0.12 -1.40 16 18 C 0.06 0.63 4.85 -3.82 -0.02 0.61 16 19 N -0.55 -6.00 5.02 -251.26 -1.26 -7.26 16 20 C 0.02 0.22 9.57 60.06 0.57 0.79 16 21 C 0.02 0.20 9.32 60.06 0.56 0.76 16 22 C 0.05 0.91 5.73 -2.84 -0.02 0.90 16 23 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.01 0.16 6.50 -51.93 -0.34 -0.17 16 25 H 0.08 2.31 6.07 -51.93 -0.32 1.99 16 26 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.07 1.38 7.89 -51.93 -0.41 0.97 16 28 H 0.04 0.91 7.76 -51.93 -0.40 0.51 16 29 H 0.07 1.04 7.95 -51.93 -0.41 0.63 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.74 6.55 -51.93 -0.34 0.40 16 32 H 0.07 0.98 8.00 -51.93 -0.42 0.56 16 33 H 0.08 0.86 7.61 -51.93 -0.40 0.46 16 34 H 0.03 0.36 8.12 -51.93 -0.42 -0.06 16 35 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 36 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 37 H 0.07 0.58 8.12 -51.93 -0.42 0.15 16 38 H 0.07 0.71 6.47 -51.93 -0.34 0.38 16 39 H 0.06 0.54 8.12 -51.93 -0.42 0.12 16 40 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 41 H 0.05 0.94 6.35 -51.93 -0.33 0.61 16 42 H 0.06 1.11 7.82 -51.93 -0.41 0.71 16 LS Contribution 320.41 15.07 4.83 4.83 Total: -1.00 -29.11 320.41 -9.39 -38.50 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -7.84 Total: -2.90 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: 0.40 Total: -11.70 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: -1.76 Total: -45.35 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.11 -9.39 -38.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701503554.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.301 kcal (2) G-P(sol) polarization free energy of solvation -29.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds